Machine learning techniques to characterize functional traits of plankton from image data
Orenstein, Eric C., Ayata, Sakina‐Dorothée, Maps, Frédéric, Becker, Érica C., Benedetti, Fabio, Biard, Tristan, Garidel‐Thoron, Thibault, Ellen, Jeffrey S., Ferrario, Filippo, Giering, Sarah L. C., Guy‐Haim, Tamar, Hoebeke, Laura, Iversen, Morten Hvitfeldt, Kiørboe, Thomas, Lalonde, Jean‐François, Lana, Arancha, Laviale, Martin, Lombard, Fabien, Lorimer, Tom, Martini, Séverine, Meyer, Albin, Möller, Klas Ove, Niehoff, Barbara, Ohman, Mark D., Pradalier, Cédric, Romagnan, Jean‐Baptiste, Schröder, Simon‐Martin, Sonnet, Virginie, Sosik, Heidi M., Stemmann, Lars S., Stock, Michiel, Terbiyik‐Kurt, Tuba, Valcárcel‐Pérez, Nerea, Vilgrain, Laure, Wacquet, Guillaume, Waite, Anya M., Irisson, Jean‐Olivier
Published in Limnology and oceanography (01.08.2022)
Published in Limnology and oceanography (01.08.2022)
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Journal Article
Comprehensive model of annual plankton succession based on the whole-plankton time series approach
Romagnan, Jean-Baptiste, Legendre, Louis, Guidi, Lionel, Jamet, Jean-Louis, Jamet, Dominique, Mousseau, Laure, Pedrotti, Maria-Luiza, Picheral, Marc, Gorsky, Gabriel, Sardet, Christian, Stemmann, Lars
Published in PloS one (17.03.2015)
Published in PloS one (17.03.2015)
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Journal Article
Analysing Temporal Variability in Spatial Distributions Using Min–Max Autocorrelation Factors: Sardine Eggs in the Bay of Biscay
Petitgas, Pierre, Renard, Didier, Desassis, Nicolas, Huret, Martin, Romagnan, Jean-Baptiste, Doray, Mathieu, Woillez, Mathieu, Rivoirard, Jacques
Published in Mathematical geosciences (01.04.2020)
Published in Mathematical geosciences (01.04.2020)
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Journal Article
Author Correction: Macroscale patterns of oceanic zooplankton composition and size structure
Brandão, Manoela C., Benedetti, Fabio, Martini, Séverine, Soviadan, Yawouvi Dodji, Irisson, Jean-Olivier, Romagnan, Jean-Baptiste, Elineau, Amanda, Desnos, Corinne, Jalabert, Laëtitia, Freire, Andrea S., Picheral, Marc, Guidi, Lionel, Gorsky, Gabriel, Bowler, Chris, Karp-Boss, Lee, Henry, Nicolas, de Vargas, Colomban, Sullivan, Matthew B., Stemmann, Lars, Lombard, Fabien
Published in Scientific reports (06.10.2021)
Published in Scientific reports (06.10.2021)
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Journal Article
Metazoan zooplankton in the Bay of Biscay: a 16-year record of individual sizes and abundances obtained using the ZooScan and ZooCAM imaging systems
Grandremy, Nina, Bourriau, Paul, Daché, Edwin, Danielou, Marie-Madeleine, Doray, Mathieu, Dupuy, Christine, Forest, Bertrand, Jalabert, Laetitia, Huret, Martin, Le Mestre, Sophie, Nowaczyk, Antoine, Petitgas, Pierre, Pineau, Philippe, Rouxel, Justin, Tardivel, Morgan, Romagnan, Jean-Baptiste
Published in Earth system science data (13.03.2024)
Published in Earth system science data (13.03.2024)
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Journal Article
Hydrology and small pelagic fish drive the spatio–temporal dynamics of springtime zooplankton assemblages over the Bay of Biscay continental shelf
Grandremy, Nina, Romagnan, Jean-Baptiste, Dupuy, Christine, Doray, Mathieu, Huret, Martin, Petitgas, Pierre
Published in Progress in oceanography (01.01.2023)
Published in Progress in oceanography (01.01.2023)
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Journal Article
The PELGAS survey: Ship-based integrated monitoring of the Bay of Biscay pelagic ecosystem
Doray, Mathieu, Petitgas, Pierre, Romagnan, Jean Baptiste, Huret, Martin, Duhamel, Erwan, Dupuy, Christine, Spitz, Jérome, Authier, Matthieu, Sanchez, Florence, Berger, Laurent, Dorémus, Ghislain, Bourriau, Paul, Grellier, Patrick, Massé, Jacques
Published in Progress in oceanography (01.09.2018)
Published in Progress in oceanography (01.09.2018)
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Journal Article
Digital zooplankton image analysis using the ZooScan integrated system
Gorsky, Gaby, Ohman, Mark D., Picheral, Marc, Gasparini, Stéphane, Stemmann, Lars, Romagnan, Jean-Baptiste, Cawood, Alison, Pesant, Stéphane, García-Comas, Carmen, Prejger, Franck
Published in Journal of plankton research (01.03.2010)
Published in Journal of plankton research (01.03.2010)
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Journal Article
Machine learning in marine ecology: an overview of techniques and applications
Rubbens, Peter, Brodie, Stephanie, Cordier, Tristan, Destro Barcellos, Diogo, Devos, Paul, Fernandes-Salvador, Jose A, Fincham, Jennifer I, Gomes, Alessandra, Handegard, Nils Olav, Howell, Kerry, Jamet, Cédric, Kartveit, Kyrre Heldal, Moustahfid, Hassan, Parcerisas, Clea, Politikos, Dimitris, Sauzède, Raphaëlle, Sokolova, Maria, Uusitalo, Laura, Van den Bulcke, Laure, van Helmond, Aloysius T M, Watson, Jordan T, Welch, Heather, Beltran-Perez, Oscar, Chaffron, Samuel, Greenberg, David S, Kühn, Bernhard, Kiko, Rainer, Lo, Madiop, Lopes, Rubens M, Möller, Klas Ove, Michaels, William, Pala, Ahmet, Romagnan, Jean-Baptiste, Schuchert, Pia, Seydi, Vahid, Villasante, Sebastian, Malde, Ketil, Irisson, Jean-Olivier
Published in ICES journal of marine science (26.09.2023)
Published in ICES journal of marine science (26.09.2023)
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Journal Article
Macroscale patterns of oceanic zooplankton composition and size structure
Brandão, Manoela C., Benedetti, Fabio, Martini, Séverine, Soviadan, Yawouvi Dodji, Irisson, Jean-Olivier, Romagnan, Jean-Baptiste, Elineau, Amanda, Desnos, Corinne, Jalabert, Laëtitia, Freire, Andrea S., Picheral, Marc, Guidi, Lionel, Gorsky, Gabriel, Bowler, Chris, Karp-Boss, Lee, Henry, Nicolas, de Vargas, Colomban, Sullivan, Matthew B., Stemmann, Lars, Lombard, Fabien
Published in Scientific reports (03.08.2021)
Published in Scientific reports (03.08.2021)
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Journal Article
Cross-shelf variability in the Iberian Peninsula Upwelling System: Impact of a mesoscale filament
Rossi, Vincent, Garçon, Véronique, Tassel, Joëlle, Romagnan, Jean-Baptiste, Stemmann, Lars, Jourdin, Frédéric, Morin, Pascal, Morel, Yves
Published in Continental shelf research (15.05.2013)
Published in Continental shelf research (15.05.2013)
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Journal Article
Combining in situ and ex situ plankton image data to reconstruct zooplankton (>1 mm) volume and mass distribution in the global ocean
Soviadan, Yawouvi Dodji, Dugenne, Mathilde, Drago, Laetitia, Biard, Tristan, Trudnowska, Emilia, Lombard, Fabien, Romagnan, Jean-Baptiste, Jamet, Jean-Louis, Kiko, Rainer, Gorsky, Gabriel, Stemmann, Lars
Published in Journal of plankton research (01.10.2024)
Published in Journal of plankton research (01.10.2024)
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Journal Article
Monitoring small pelagic fish in the Bay of Biscay ecosystem, using indicators from an integrated survey
Doray, Mathieu, Petitgas, Pierre, Huret, Martin, Duhamel, Erwan, Romagnan, Jean Baptiste, Authier, Matthieu, Dupuy, Christine, Spitz, Jérome
Published in Progress in oceanography (01.09.2018)
Published in Progress in oceanography (01.09.2018)
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Journal Article
Ecosystem spatial structure revealed by integrated survey data
Petitgas, Pierre, Huret, Martin, Dupuy, Christine, Spitz, Jérôme, Authier, Matthieu, Romagnan, Jean Baptiste, Doray, Mathieu
Published in Progress in oceanography (01.09.2018)
Published in Progress in oceanography (01.09.2018)
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Journal Article
Community‐Level Responses to Iron Availability in Open Ocean Plankton Ecosystems
Caputi, Luigi, Carradec, Quentin, Eveillard, Damien, Kirilovsky, Amos, Pelletier, Eric, Pierella Karlusich, Juan J., Rocha Jimenez Vieira, Fabio, Villar, Emilie, Chaffron, Samuel, Scalco, Eleonora, Acinas, Silvia G., Alberti, Adriana, Bertrand, Alexis, Biard, Tristan, Bittner, Lucie, Boccara, Martine, Brum, Jennifer R., Busseni, Greta, Carratalà, Anna, Claustre, Hervé, Coelho, Luis Pedro, Colin, Sébastien, D'Aniello, Salvatore, Da Silva, Corinne, Del Core, Marianna, Doré, Hugo, Kokoszka, Florian, Lejeusne, Christophe, Lepoivre, Cyrille, Lima‐Mendez, Gipsi, Lombard, Fabien, Lukeš, Julius, Maillet, Nicolas, Madoui, Mohammed‐Amin, Martinez, Elodie, Mazzocchi, Maria Grazia, Néou, Mario B., Paz‐Yepes, Javier, Poulain, Julie, Ramondenc, Simon, Romagnan, Jean‐Baptiste, Salvagio Manta, Daniela, Sanges, Remo, Speich, Sabrina, Sprovieri, Mario, Sunagawa, Shinichi, Tanaka, Atsuko, Tirichine, Leila, Trottier, Camille, Uitz, Julia, Veluchamy, Alaguraj, Veselá, Jana, Vincent, Flora, Yau, Sheree, Kandels‐Lewis, Stefanie, Dimier, Céline, Picheral, Marc, Bork, Peer, Boss, Emmanuel, Vargas, Colomban, Follows, Michael J., Grimsley, Nigel, Hingamp, Pascal, Karsenti, Eric, Stemmann, Lars, Sullivan, Matthew B., Tagliabue, Alessandro, Garczarek, Laurence, d'Ortenzio, Fabrizio, Testor, Pierre, d'Alcalà, Maurizio Ribera, Wincker, Patrick, Bowler, Chris, Iudicone, Daniele, Acinas, Silvia G., Bork, Peer, Boss, Emmanuel, Bowler, Chris, Vargas, Colomban, Follows, Michael J., Gorsky, Gabriel, Grimsley, Nigel, Hingamp, Pascal, Iudicone, Daniele, Jaillon, Olivier, Kandels‐Lewis, Stefanie, Krzic, Uros, Not, Fabrice, Ogata, Hiroyuki, Pesant, Stéphane, Raes, Jeroen, Reynaud, Emmanuel G., Sardet, Christian, Sieracki, Mike, Stemmann, Lars, Sullivan, Matthew B., Sunagawa, Shinichi, Velayoudon, Didier, Weissenbach, Jean, Wincker, Patrick
Published in Global biogeochemical cycles (01.03.2019)
Published in Global biogeochemical cycles (01.03.2019)
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Journal Article
Ubiquity of inverted 'gelatinous' ecosystem pyramids in the global ocean
Lombard, Fabien, Guidi, Lionel, Brandão, Manoela C, Luis Pedro Coelho, Colin, Sébastien, Dolan, John Richard, Elineau, Amanda, Gasol, Josep M, Grondin, Pierre Luc, Henry, Nicolas, Ibarbalz, Federico M, Jalabert, Laetitia, Loreau, Michel, Martini, Séverinne, Mériguet, Zoé, Picheral, Marc, Juan José Pierella Karlusich, Pepperkok Rainer, Jean-Baptiste Romagnan, Zinger, Lucie, Tara Oceans Coordinators, Stemmann, Lars, Acinas, Silvia, Karp-Boss, Lee, Boss, Emmanuel, Sullivan, Matthew B, De Vargas, Colomban, Bowler, Chris, Karsenti, Eric, Gorsky, Gabriel
Published in bioRxiv (12.02.2024)
Published in bioRxiv (12.02.2024)
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Paper
High frequency mesozooplankton monitoring: Can imaging systems and automated sample analysis help us describe and interpret changes in zooplankton community composition and size structure — An example from a coastal site
Romagnan, Jean Baptiste, Aldamman, Lama, Gasparini, Stéphane, Nival, Paul, Aubert, Anaïs, Jamet, Jean Louis, Stemmann, Lars
Published in Journal of marine systems (01.10.2016)
Published in Journal of marine systems (01.10.2016)
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Journal Article
Metazoan zooplankton in the Bay of Biscay: 16 years of individual sizes and abundances from the ZooScan and ZooCAM imaging systems
Grandremy, Nina, Bourriau, Paul, Daché, Edwin, Danielou, Marie-Madeleine, Doray, Mathieu, Dupuy, Christine, Forest, Bertrand, Jalabert, Laetitia, Huret, Martin, Le Mestre, Sophie, Nowaczyk, Antoine, Petitgas, Pierre, Pineau, Philippe, Rouxel, Justin, Tardivel, Morgan, Romagnan, Jean-Baptiste
Published in Earth system science data (01.06.2023)
Published in Earth system science data (01.06.2023)
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Journal Article