DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation
Dubin, Manu J, Zhang, Pei, Meng, Dazhe, Remigereau, Marie-Stanislas, Osborne, Edward J, Paolo Casale, Francesco, Drewe, Philipp, Kahles, André, Jean, Geraldine, Vilhjálmsson, Bjarni, Jagoda, Joanna, Irez, Selen, Voronin, Viktor, Song, Qiang, Long, Quan, Rätsch, Gunnar, Stegle, Oliver, Clark, Richard M, Nordborg, Magnus
Published in eLife (05.05.2015)
Published in eLife (05.05.2015)
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Journal Article
Sorting genomes by prefix double-cut-and-joins
Fertin, Guillaume, Jean, Géraldine, Labarre, Anthony
Published in Theoretical computer science (12.01.2025)
Published in Theoretical computer science (12.01.2025)
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Journal Article
Evaluation of open search methods based on theoretical mass spectra comparison
Lysiak, Albane, Fertin, Guillaume, Jean, Géraldine, Tessier, Dominique
Published in BMC bioinformatics (26.04.2021)
Published in BMC bioinformatics (26.04.2021)
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Journal Article
The Maximum Zero-Sum Partition problem
Fertin, Guillaume, Fontaine, Oscar, Jean, Géraldine, Vialette, Stéphane
Published in Theoretical computer science (01.12.2024)
Published in Theoretical computer science (01.12.2024)
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Journal Article
The Maximum Colorful Arborescence problem: How (computationally) hard can it be?
Fertin, Guillaume, Fradin, Julien, Jean, Géraldine
Published in Theoretical computer science (08.01.2021)
Published in Theoretical computer science (08.01.2021)
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Journal Article
Assignment of orthologous genes in unbalanced genomes using cycle packing of adjacency graphs
Siqueira, Gabriel, Oliveira, Andre Rodrigues, Alexandrino, Alexsandro Oliveira, Jean, Géraldine, Fertin, Guillaume, Dias, Zanoni
Published in Journal of heuristics (01.12.2024)
Published in Journal of heuristics (01.12.2024)
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Journal Article
Reversal and Transposition Distance on Unbalanced Genomes Using Intergenic Information
Alexandrino, Alexsandro Oliveira, Oliveira, Andre Rodrigues, Jean, Géraldine, Fertin, Guillaume, Dias, Ulisses, Dias, Zanoni
Published in Journal of computational biology (01.08.2023)
Published in Journal of computational biology (01.08.2023)
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Journal Article
Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilience
Mandakovic, Dinka, Rojas, Claudia, Maldonado, Jonathan, Latorre, Mauricio, Travisany, Dante, Delage, Erwan, Bihouée, Audrey, Jean, Géraldine, Díaz, Francisca P., Fernández-Gómez, Beatriz, Cabrera, Pablo, Gaete, Alexis, Latorre, Claudio, Gutiérrez, Rodrigo A., Maass, Alejandro, Cambiazo, Verónica, Navarrete, Sergio A., Eveillard, Damien, González, Mauricio
Published in Scientific reports (12.04.2018)
Published in Scientific reports (12.04.2018)
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Journal Article
Systematic evaluation of spliced alignment programs for RNA-seq data
Engström, Pär G, Steijger, Tamara, Sipos, Botond, Grant, Gregory R, Kahles, André, Rätsch, Gunnar, Goldman, Nick, Hubbard, Tim J, Harrow, Jennifer, Guigó, Roderic, Bertone, Paul
Published in Nature methods (01.12.2013)
Published in Nature methods (01.12.2013)
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Journal Article
Multiple reference genomes and transcriptomes for Arabidopsis thaliana
Gan, Xiangchao, Stegle, Oliver, Behr, Jonas, Steffen, Joshua G., Drewe, Philipp, Hildebrand, Katie L., Lyngsoe, Rune, Schultheiss, Sebastian J., Osborne, Edward J., Sreedharan, Vipin T., Kahles, André, Bohnert, Regina, Jean, Géraldine, Derwent, Paul, Kersey, Paul, Belfield, Eric J., Harberd, Nicholas P., Kemen, Eric, Toomajian, Christopher, Kover, Paula X., Clark, Richard M., Rätsch, Gunnar, Mott, Richard
Published in Nature (London) (22.09.2011)
Published in Nature (London) (22.09.2011)
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Journal Article
Algorithms for computing the double cut and join distance on both gene order and intergenic sizes
Fertin, Guillaume, Jean, Géraldine, Tannier, Eric
Published in Algorithms for molecular biology (05.06.2017)
Published in Algorithms for molecular biology (05.06.2017)
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Journal Article
Prefix and suffix reversals on strings
Fertin, Guillaume, Jankowiak, Loïc, Jean, Géraldine
Published in Discrete Applied Mathematics (10.09.2018)
Published in Discrete Applied Mathematics (10.09.2018)
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Journal Article
Sorting by Multi-Cut Rearrangements
Bulteau, Laurent, Fertin, Guillaume, Jean, Géraldine, Komusiewicz, Christian
Published in Algorithms (01.06.2021)
Published in Algorithms (01.06.2021)
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Journal Article
Sorting Signed Permutations by Intergenic Reversals
Oliveira, Andre Rodrigues, Jean, Geraldine, Fertin, Guillaume, Brito, Klairton Lima, Bulteau, Laurent, Dias, Ulisses, Dias, Zanoni
Published in IEEE/ACM transactions on computational biology and bioinformatics (01.11.2021)
Published in IEEE/ACM transactions on computational biology and bioinformatics (01.11.2021)
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Journal Article
Fast alignment of mass spectra in large proteomics datasets, capturing dissimilarities arising from multiple complex modifications of peptides
Prunier, Grégoire, Cherkaoui, Mehdi, Lysiak, Albane, Langella, Olivier, Blein-Nicolas, Mélisande, Lollier, Virginie, Benoist, Emile, Jean, Géraldine, Fertin, Guillaume, Rogniaux, Hélène, Tessier, Dominique
Published in BMC bioinformatics (08.11.2023)
Published in BMC bioinformatics (08.11.2023)
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Journal Article
Super short operations on both gene order and intergenic sizes
Oliveira, Andre R, Jean, Géraldine, Fertin, Guillaume, Dias, Ulisses, Dias, Zanoni
Published in Algorithms for molecular biology (05.11.2019)
Published in Algorithms for molecular biology (05.11.2019)
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Journal Article
Hybrid de novo tandem repeat detection using short and long reads
Fertin, Guillaume, Jean, Géraldine, Radulescu, Andreea, Rusu, Irena
Published in BMC medical genomics (23.09.2015)
Published in BMC medical genomics (23.09.2015)
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Journal Article