Durable coexistence of donor and recipient strains after fecal microbiota transplantation
Li, Simone S., Zhu, Ana, Benes, Vladimir, Costea, Paul I., Hercog, Rajna, Hildebrand, Falk, Huerta-Cepas, Jaime, Nieuwdorp, Max, Salojärvi, Jarkko, Voigt, Anita Y., Zeller, Georg, Sunagawa, Shinichi, de Vos, Willem M., Bork, Peer
Published in Science (American Association for the Advancement of Science) (29.04.2016)
Published in Science (American Association for the Advancement of Science) (29.04.2016)
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Journal Article
Arabidopsis RCD1 coordinates chloroplast and mitochondrial functions through interaction with ANAC transcription factors
Shapiguzov, Alexey, Vainonen, Julia P, Hunter, Kerri, Tossavainen, Helena, Tiwari, Arjun, Järvi, Sari, Hellman, Maarit, Aarabi, Fayezeh, Alseekh, Saleh, Wybouw, Brecht, Van Der Kelen, Katrien, Nikkanen, Lauri, Krasensky-Wrzaczek, Julia, Sipari, Nina, Keinänen, Markku, Tyystjärvi, Esa, Rintamäki, Eevi, De Rybel, Bert, Salojärvi, Jarkko, Van Breusegem, Frank, Fernie, Alisdair R, Brosché, Mikael, Permi, Perttu, Aro, Eva-Mari, Wrzaczek, Michael, Kangasjärvi, Jaakko
Published in eLife (15.02.2019)
Published in eLife (15.02.2019)
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Journal Article
Large-Scale Phenomics Identifies Primary and Fine-Tuning Roles for CRKs in Responses Related to Oxidative Stress
Bourdais, Gildas, Burdiak, Paweł, Gauthier, Adrien, Nitsch, Lisette, Salojärvi, Jarkko, Rayapuram, Channabasavangowda, Idänheimo, Niina, Hunter, Kerri, Kimura, Sachie, Merilo, Ebe, Vaattovaara, Aleksia, Oracz, Krystyna, Kaufholdt, David, Pallon, Andres, Anggoro, Damar Tri, Glów, Dawid, Lowe, Jennifer, Zhou, Ji, Mohammadi, Omid, Puukko, Tuomas, Albert, Andreas, Lang, Hans, Ernst, Dieter, Kollist, Hannes, Brosché, Mikael, Durner, Jörg, Borst, Jan Willem, Collinge, David B, Karpiński, Stanisław, Lyngkjær, Michael F, Robatzek, Silke, Wrzaczek, Michael, Kangasjärvi, Jaakko
Published in PLoS genetics (01.07.2015)
Published in PLoS genetics (01.07.2015)
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Journal Article
Transfer of Intestinal Microbiota From Lean Donors Increases Insulin Sensitivity in Individuals With Metabolic Syndrome
Vrieze, Anne, Van Nood, Els, Holleman, Frits, Salojärvi, Jarkko, Kootte, Ruud S, Bartelsman, Joep F.W.M, Dallinga–Thie, Geesje M, Ackermans, Mariette T, Serlie, Mireille J, Oozeer, Raish, Derrien, Muriel, Druesne, Anne, Van Hylckama Vlieg, Johan E.T, Bloks, Vincent W, Groen, Albert K, Heilig, Hans G.H.J, Zoetendal, Erwin G, Stroes, Erik S, de Vos, Willem M, Hoekstra, Joost B.L, Nieuwdorp, Max
Published in Gastroenterology (New York, N.Y. 1943) (01.10.2012)
Published in Gastroenterology (New York, N.Y. 1943) (01.10.2012)
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Journal Article
The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera
Ahola, Virpi, Lehtonen, Rainer, Somervuo, Panu, Salmela, Leena, Koskinen, Patrik, Rastas, Pasi, Välimäki, Niko, Paulin, Lars, Kvist, Jouni, Wahlberg, Niklas, Tanskanen, Jaakko, Hornett, Emily A., Ferguson, Laura C., Luo, Shiqi, Cao, Zijuan, de Jong, Maaike A., Duplouy, Anne, Smolander, Olli-Pekka, Vogel, Heiko, McCoy, Rajiv C., Qian, Kui, Chong, Wong Swee, Zhang, Qin, Ahmad, Freed, Haukka, Jani K., Joshi, Aruj, Salojärvi, Jarkko, Wheat, Christopher W., Grosse-Wilde, Ewald, Hughes, Daniel, Katainen, Riku, Pitkänen, Esa, Ylinen, Johannes, Waterhouse, Robert M., Turunen, Mikko, Vähärautio, Anna, Ojanen, Sami P., Schulman, Alan H., Taipale, Minna, Lawson, Daniel, Ukkonen, Esko, Mäkinen, Veli, Goldsmith, Marian R., Holm, Liisa, Auvinen, Petri, Frilander, Mikko J., Hanski, Ilkka
Published in Nature communications (05.09.2014)
Published in Nature communications (05.09.2014)
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Journal Article
Tissue-specific study across the stem reveals the chemistry and transcriptome dynamics of birch bark
Alonso-Serra, Juan, Safronov, Omid, Lim, Kean-Jin, Fraser-Miller, Sara J., Blokhina, Olga B., Campilho, Ana, Chong, Sun-Li, Fagerstedt, Kurt, Haavikko, Raisa, Helariutta, Ykä, Immanen, Juha, Kangasjärvi, Jaakko, Kauppila, Tiina J., Lehtonen, Mari, Ragni, Laura, Rajaraman, Sitaram, Räsänen, Riikka-Marjaana, Safdari, Pezhman, Tenkanen, Maija, Yli-Kauhaluoma, Jari T., Teeri, Teemu H., Strachan, Clare J., Nieminen, Kaisa, Salojärvi, Jarkko
Published in The New phytologist (01.06.2019)
Published in The New phytologist (01.06.2019)
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Journal Article
Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch
Salojärvi, Jarkko, Smolander, Olli-Pekka, Nieminen, Kaisa, Rajaraman, Sitaram, Safronov, Omid, Safdari, Pezhman, Lamminmäki, Airi, Immanen, Juha, Lan, Tianying, Tanskanen, Jaakko, Rastas, Pasi, Amiryousefi, Ali, Jayaprakash, Balamuralikrishna, Kammonen, Juhana I, Hagqvist, Risto, Eswaran, Gugan, Ahonen, Viivi Helena, Serra, Juan Alonso, Asiegbu, Fred O, de Dios Barajas-Lopez, Juan, Blande, Daniel, Blokhina, Olga, Blomster, Tiina, Broholm, Suvi, Brosché, Mikael, Cui, Fuqiang, Dardick, Chris, Ehonen, Sanna E, Elomaa, Paula, Escamez, Sacha, Fagerstedt, Kurt V, Fujii, Hiroaki, Gauthier, Adrien, Gollan, Peter J, Halimaa, Pauliina, Heino, Pekka I, Himanen, Kristiina, Hollender, Courtney, Kangasjärvi, Saijaliisa, Kauppinen, Leila, Kelleher, Colin T, Kontunen-Soppela, Sari, Koskinen, J Patrik, Kovalchuk, Andriy, Kärenlampi, Sirpa O, Kärkönen, Anna K, Lim, Kean-Jin, Leppälä, Johanna, Macpherson, Lee, Mikola, Juha, Mouhu, Katriina, Mähönen, Ari Pekka, Niinemets, Ülo, Oksanen, Elina, Overmyer, Kirk, Palva, E Tapio, Pazouki, Leila, Pennanen, Ville, Puhakainen, Tuula, Poczai, Péter, Possen, Boy J H M, Punkkinen, Matleena, Rahikainen, Moona M, Rousi, Matti, Ruonala, Raili, van der Schoot, Christiaan, Shapiguzov, Alexey, Sierla, Maija, Sipilä, Timo P, Sutela, Suvi, Teeri, Teemu H, Tervahauta, Arja I, Vaattovaara, Aleksia, Vahala, Jorma, Vetchinnikova, Lidia, Welling, Annikki, Wrzaczek, Michael, Xu, Enjun, Paulin, Lars G, Schulman, Alan H, Lascoux, Martin, Albert, Victor A, Auvinen, Petri, Helariutta, Ykä, Kangasjärvi, Jaakko
Published in Nature genetics (01.06.2017)
Published in Nature genetics (01.06.2017)
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Journal Article
Genomic insights into rapid speciation within the world’s largest tree genus Syzygium
Low, Yee Wen, Rajaraman, Sitaram, Tomlin, Crystal M., Ahmad, Joffre Ali, Ardi, Wisnu H., Armstrong, Kate, Athen, Parusuraman, Berhaman, Ahmad, Bone, Ruth E., Cheek, Martin, Cho, Nicholas R. W., Choo, Le Min, Cowie, Ian D., Crayn, Darren, Fleck, Steven J., Ford, Andrew J., Forster, Paul I., Girmansyah, Deden, Goyder, David J., Gray, Bruce, Heatubun, Charlie D., Ibrahim, Ali, Ibrahim, Bazilah, Jayasinghe, Himesh D., Kalat, Muhammad Ariffin, Kathriarachchi, Hashendra S., Kintamani, Endang, Koh, Sin Lan, Lai, Joseph T. K., Lee, Serena M. L., Leong, Paul K. F., Lim, Wei Hao, Lum, Shawn K. Y., Mahyuni, Ridha, McDonald, William J. F., Metali, Faizah, Mustaqim, Wendy A., Naiki, Akiyo, Ngo, Kang Min, Niissalo, Matti, Ranasinghe, Subhani, Repin, Rimi, Rustiami, Himmah, Simbiak, Victor I., Sukri, Rahayu S., Sunarti, Siti, Trethowan, Liam A., Trias-Blasi, Anna, Vasconcelos, Thais N. C., Wanma, Jimmy F., Widodo, Pudji, Wijesundara, Douglas Siril A., Worboys, Stuart, Yap, Jing Wei, Yong, Kien Thai, Khew, Gillian S. W., Salojärvi, Jarkko, Michael, Todd P., Middleton, David J., Burslem, David F. R. P., Lindqvist, Charlotte, Lucas, Eve J., Albert, Victor A.
Published in Nature communications (12.09.2022)
Published in Nature communications (12.09.2022)
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Journal Article
Improvement of Insulin Sensitivity after Lean Donor Feces in Metabolic Syndrome Is Driven by Baseline Intestinal Microbiota Composition
Kootte, Ruud S., Levin, Evgeni, Salojärvi, Jarkko, Smits, Loek P., Hartstra, Annick V., Udayappan, Shanti D., Hermes, Gerben, Bouter, Kristien E., Koopen, Annefleur M., Holst, Jens J., Knop, Filip K., Blaak, Ellen E., Zhao, Jing, Smidt, Hauke, Harms, Amy C., Hankemeijer, Thomas, Bergman, Jacques J.G.H.M., Romijn, Hans A., Schaap, Frank G., Olde Damink, Steven W.M., Ackermans, Mariette T., Dallinga-Thie, Geesje M., Zoetendal, Erwin, de Vos, Willem M., Serlie, Mireille J., Stroes, Erik S.G., Groen, Albert K., Nieuwdorp, Max
Published in Cell metabolism (03.10.2017)
Published in Cell metabolism (03.10.2017)
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Journal Article
Genome-wide analysis tracks the emergence of intraspecific polyploids in Phragmites australis
Wang, Cui, Liu, Lele, Yin, Meiqi, Eller, Franziska, Brix, Hans, Wang, Tong, Salojärvi, Jarkko, Guo, Weihua
Published in Npj Biodiversity (01.10.2024)
Published in Npj Biodiversity (01.10.2024)
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Journal Article
Chromosome-level genome assemblies reveal genome evolution of an invasive plant Phragmites australis
Wang, Cui, Liu, Lele, Yin, Meiqi, Liu, Bingbing, Wu, Yiming, Eller, Franziska, Gao, Yingqi, Brix, Hans, Wang, Tong, Guo, Weihua, Salojärvi, Jarkko
Published in Communications biology (17.08.2024)
Published in Communications biology (17.08.2024)
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Journal Article
Author Correction: Assembly and Analysis of Unmapped Genome Sequence Reads Reveal Novel Sequence and Variation in Dogs
Holden, Lindsay A., Arumilli, Meharji, Hytönen, Marjo K., Hundi, Sruthi, Salojärvi, Jarkko, Brown, Kim H., Lohi, Hannes
Published in Scientific reports (02.08.2018)
Published in Scientific reports (02.08.2018)
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Journal Article
Tipping elements in the human intestinal ecosystem
Lahti, Leo, Salojärvi, Jarkko, Salonen, Anne, Scheffer, Marten, de Vos, Willem M.
Published in Nature communications (08.07.2014)
Published in Nature communications (08.07.2014)
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Journal Article
PLETHORA gradient formation mechanism separates auxin responses
Mähönen, Ari Pekka, Tusscher, Kirsten ten, Siligato, Riccardo, Smetana, Ondřej, Díaz-Triviño, Sara, Salojärvi, Jarkko, Wachsman, Guy, Prasad, Kalika, Heidstra, Renze, Scheres, Ben
Published in Nature (London) (06.11.2014)
Published in Nature (London) (06.11.2014)
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Journal Article
Impact of diet and individual variation on intestinal microbiota composition and fermentation products in obese men
Salonen, Anne, Lahti, Leo, Salojärvi, Jarkko, Holtrop, Grietje, Korpela, Katri, Duncan, Sylvia H, Date, Priya, Farquharson, Freda, Johnstone, Alexandra M, Lobley, Gerald E, Louis, Petra, Flint, Harry J, de Vos, Willem M
Published in The ISME Journal (01.11.2014)
Published in The ISME Journal (01.11.2014)
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Journal Article
Effects of bowel cleansing on the intestinal microbiota
Jalanka, Jonna, Salonen, Anne, Salojärvi, Jarkko, Ritari, Jarmo, Immonen, Outi, Marciani, Luca, Gowland, Penny, Hoad, Caroline, Garsed, Klara, Lam, Ching, Palva, Airi, Spiller, Robin C, de Vos, Willem M
Published in Gut (01.10.2015)
Published in Gut (01.10.2015)
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Journal Article
Apoplastic Reactive Oxygen Species Transiently Decrease Auxin Signaling and Cause Stress-Induced Morphogenic Response in Arabidopsis
Blomster, Tiina, Salojärvi, Jarkko, Sipari, Nina, Brosché, Mikael, Ahlfors, Reetta, Keinänen, Markku, Overmyer, Kirk, Kangasjärvi, Jaakko
Published in Plant physiology (Bethesda) (01.12.2011)
Published in Plant physiology (Bethesda) (01.12.2011)
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Journal Article
Discordant temporal development of bacterial phyla and the emergence of core in the fecal microbiota of young children
Cheng, Jing, Ringel-Kulka, Tamar, Heikamp-de Jong, Ineke, Ringel, Yehuda, Carroll, Ian, de Vos, Willem M, Salojärvi, Jarkko, Satokari, Reetta
Published in The ISME Journal (01.04.2016)
Published in The ISME Journal (01.04.2016)
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Journal Article
Two divergent haplotypes from a highly heterozygous lychee genome suggest independent domestication events for early and late-maturing cultivars
Hu, Guibing, Feng, Junting, Xiang, Xu, Wang, Jiabao, Salojärvi, Jarkko, Liu, Chengming, Wu, Zhenxian, Zhang, Jisen, Liang, Xinming, Jiang, Zide, Liu, Wei, Ou, Liangxi, Li, Jiawei, Fan, Guangyi, Mai, Yingxiao, Chen, Chengjie, Zhang, Xingtan, Zheng, Jiakun, Zhang, Yanqing, Peng, Hongxiang, Yao, Lixian, Wai, Ching Man, Luo, Xinping, Fu, Jiaxin, Tang, Haibao, Lan, Tianying, Lai, Biao, Sun, Jinhua, Wei, Yongzan, Li, Huanling, Chen, Jiezhen, Huang, Xuming, Yan, Qian, Liu, Xin, McHale, Leah K., Rolling, William, Guyot, Romain, Sankoff, David, Zheng, Chunfang, Albert, Victor A., Ming, Ray, Chen, Houbin, Xia, Rui, Li, Jianguo
Published in Nature genetics (01.01.2022)
Published in Nature genetics (01.01.2022)
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Journal Article
Improved taxonomic assignment of human intestinal 16S rRNA sequences by a dedicated reference database
Ritari, Jarmo, Salojärvi, Jarkko, Lahti, Leo, de Vos, Willem M
Published in BMC genomics (12.12.2015)
Published in BMC genomics (12.12.2015)
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