Scaffolding pre-assembled contigs using SSPACE
BOETZER, Marten, HENKEL, Christiaan V, JANSEN, Hans J, BUTLER, Derek, PIROVANO, Walter
Published in Bioinformatics (Oxford, England) (15.02.2011)
Published in Bioinformatics (Oxford, England) (15.02.2011)
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RNAseq Profiling of Leukocyte Populations in Zebrafish Larvae Reveals a cxcl11 Chemokine Gene as a Marker of Macrophage Polarization During Mycobacterial Infection
Rougeot, Julien, Torraca, Vincenzo, Zakrzewska, Ania, Kanwal, Zakia, Jansen, Hans J, Sommer, Frida, Spaink, Herman P, Meijer, Annemarie H
Published in Frontiers in immunology (17.04.2019)
Published in Frontiers in immunology (17.04.2019)
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Primitive duplicate Hox clusters in the European eel's genome
Henkel, Christiaan V, Burgerhout, Erik, de Wijze, Daniëlle L, Dirks, Ron P, Minegishi, Yuki, Jansen, Hans J, Spaink, Herman P, Dufour, Sylvie, Weltzien, Finn-Arne, Tsukamoto, Katsumi, van den Thillart, Guido E E J M
Published in PloS one (24.02.2012)
Published in PloS one (24.02.2012)
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MinION Analysis and Reference Consortium: Phase 1 data release and analysis
Ip, Camilla L C, Loose, Matthew, Tyson, John R, de Cesare, Mariateresa, Brown, Bonnie L, Jain, Miten, Leggett, Richard M, Eccles, David A, Zalunin, Vadim, Urban, John M, Piazza, Paolo, Bowden, Rory J, Paten, Benedict, Mwaigwisya, Solomon, Batty, Elizabeth M, Simpson, Jared T, Snutch, Terrance P, Birney, Ewan, Buck, David, Goodwin, Sara, Jansen, Hans J, O'Grady, Justin, Olsen, Hugh E
Published in F1000 research (2015)
Published in F1000 research (2015)
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Testing tuberculosis drug efficacy in a zebrafish high-throughput translational medicine screen
Ordas, Anita, Raterink, Robert-Jan, Cunningham, Fraser, Jansen, Hans J, Wiweger, Malgorzata I, Jong-Raadsen, Susanne, Bos, Sabine, Bates, Robert H, Barros, David, Meijer, Annemarie H, Vreeken, Rob J, Ballell-Pages, Lluís, Dirks, Ron P, Hankemeier, Thomas, Spaink, Herman P
Published in Antimicrobial agents and chemotherapy (01.02.2015)
Published in Antimicrobial agents and chemotherapy (01.02.2015)
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MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9.0 chemistry [version 1; peer review: 1 approved, 2 approved with reservations]
Jain, Miten, Tyson, John R, Loose, Matthew, Ip, Camilla L.C, Eccles, David A, O'Grady, Justin, Malla, Sunir, Leggett, Richard M, Wallerman, Ola, Jansen, Hans J, Zalunin, Vadim, Birney, Ewan, Brown, Bonnie L, Snutch, Terrance P, Olsen, Hugh E
Published in F1000 research (2017)
Published in F1000 research (2017)
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Deep RNA sequencing of the skeletal muscle transcriptome in swimming fish
Palstra, Arjan P, Beltran, Sergi, Burgerhout, Erik, Brittijn, Sebastiaan A, Magnoni, Leonardo J, Henkel, Christiaan V, Jansen, Hans J, van den Thillart, Guido E E J M, Spaink, Herman P, Planas, Josep V
Published in PloS one (08.01.2013)
Published in PloS one (08.01.2013)
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The Rauvolfia tetraphylla genome suggests multiple distinct biosynthetic routes for yohimbane monoterpene indole alkaloids
Stander, Emily Amor, Lehka, Beata, Carqueijeiro, Inês, Cuello, Clément, Hansson, Frederik G, Jansen, Hans J, Dugé De Bernonville, Thomas, Birer Williams, Caroline, Vergès, Valentin, Lezin, Enzo, Lorensen, Marcus Daniel Brandbjerg Bohn, Dang, Thu-Thuy, Oudin, Audrey, Lanoue, Arnaud, Durand, Mickael, Giglioli-Guivarc'h, Nathalie, Janfelt, Christian, Papon, Nicolas, Dirks, Ron P, O'connor, Sarah Ellen, Jensen, Michael Krogh, Besseau, Sébastien, Courdavault, Vincent
Published in Communications biology (24.11.2023)
Published in Communications biology (24.11.2023)
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Corrigendum: RNAseq Profiling of Leukocyte Populations in Zebrafish Larvae Reveals a cxcl11 Chemokine Gene as a Marker of Macrophage Polarization During Mycobacterial Infection
Rougeot, Julien, Torraca, Vincenzo, Zakrzewska, Ania, Kanwal, Zakia, Jansen, Hans J, Sommer, Frida, Spaink, Herman P, Meijer, Annemarie H
Published in Frontiers in immunology (02.12.2019)
Published in Frontiers in immunology (02.12.2019)
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Journal Article
The Madagascar palm genome provides new insights on the evolution of Apocynaceae specialized metabolism
Cuello, Clément, Jansen, Hans J., Abdallah, Cécile, Zamar Mbadinga, Duchesse-Lacours, Birer Williams, Caroline, Durand, Mickael, Oudin, Audrey, Papon, Nicolas, Giglioli-Guivarc'h, Nathalie, Dirks, Ron P., Jensen, Michael Krogh, O'Connor, Sarah Ellen, Besseau, Sébastien, Courdavault, Vincent
Published in Heliyon (30.03.2024)
Published in Heliyon (30.03.2024)
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Changes in ovarian gene expression profiles and plasma hormone levels in maturing European eel ( Anguilla anguilla ); Biomarkers for broodstock selection
Burgerhout, Erik, Minegishi, Yuki, Brittijn, Sebastiaan A, de Wijze, Danielle L, Henkel, Christiaan V, Jansen, Hans J, Spaink, Herman P, Dirks, Ron P, van den Thillart, Guido E.E.J.M
Published in General and comparative endocrinology (01.01.2016)
Published in General and comparative endocrinology (01.01.2016)
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An updated version of the Madagascar periwinkle genome [version 1; peer review: 2 approved]
Cuello, Clément, Stander, Emily Amor, Jansen, Hans J., Dugé De Bernonville, Thomas, Oudin, Audrey, Birer Williams, Caroline, Lanoue, Arnaud, Giglioli Guivarc'h, Nathalie, Papon, Nicolas, Dirks, Ron P., Jensen, Michael Krogh, O'Connor, Sarah Ellen, Besseau, Sébastien, Courdavault, Vincent
Published in F1000 research (2022)
Published in F1000 research (2022)
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Journal Article
Comparison of the exomes of common carp (Cyprinus carpio) and zebrafish (Danio rerio)
Henkel, Christiaan V, Dirks, Ron P, Jansen, Hans J, Forlenza, Maria, Wiegertjes, Geert F, Howe, Kerstin, van den Thillart, Guido E E J M, Spaink, Herman P
Published in Zebrafish (01.06.2012)
Published in Zebrafish (01.06.2012)
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Journal Article
De novo whole-genome assembly of a wild type yeast isolate using nanopore sequencing
Liem, Michael, Jansen, Hans J., Dirks, Ron P., Henkel, Christiaan V., van Heusden, G. Paul H., Lemmers, Richard J.L.F., Omer, Trifa, Shao, Shuai, Punt, Peter J., Spaink, Herman P.
Published in F1000 research (01.01.2017)
Published in F1000 research (01.01.2017)
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Analyzing the function of a hox gene: An evolutionary approach
Michaut, Lydia, Jansen, Hans J., Bardine, Nabila, Durston, Antony J., Gehring, Walter J.
Published in Development, growth & differentiation (01.12.2011)
Published in Development, growth & differentiation (01.12.2011)
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king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
Vonk, Freek J., Casewell, Nicholas R., Henkel, Christiaan V., Heimberg, Alysha M., Jansen, Hans J., McCleary, Ryan J. R., Kerkkamp, Harald M. E., Vos, Rutger A., Guerreiro, Isabel, Calvete, Juan J., Wüster, Wolfgang, Woods, Anthony E., Logan, Jessica M., Harrison, Robert A., Castoe, Todd A., de Koning, A. P. Jason, Pollock, David D., Yandell, Mark, Calderon, Diego, Renjifo, Camila, Currier, Rachel B., Salgado, David, Pla, Davinia, Sanz, Libia, Hyder, Asad S., Ribeiro, José M. C., Arntzen, Jan W., van den Thillart, Guido E. E. J. M., Boetzer, Marten, Pirovano, Walter, Dirks, Ron P., Spaink, Herman P., Duboule, Denis, McGlinn, Edwina, Kini, Manjunatha, Richardson, Michael K.
Published in Proceedings of the National Academy of Sciences - PNAS (17.12.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (17.12.2013)
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Journal Article
Rapid de novo assembly of the European eel genome from nanopore sequencing reads
Jansen, Hans J, Liem, Michael, Jong-Raadsen, Susanne A, Dufour, Sylvie, Weltzien, Finn-Arne, Swinkels, William, Koelewijn, Alex, Palstra, Arjan P, Pelster, Bernd, Spaink, Herman P, Thillart, Guido E van den, Dirks, Ron P, Henkel, Christiaan V
Published in Scientific reports (03.08.2017)
Published in Scientific reports (03.08.2017)
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Journal Article
Deep transcriptome analysis of the heat shock response in an Atlantic sturgeon (Acipenser oxyrinchus) cell line
Yebra-Pimentel, Elena Santidrián, Gebert, Marina, Jansen, Hans J., Jong-Raadsen, Susanne A., Dirks, Ron P.H.
Published in Fish & shellfish immunology (01.05.2019)
Published in Fish & shellfish immunology (01.05.2019)
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