Splice2Deep: An ensemble of deep convolutional neural networks for improved splice site prediction in genomic DNA
Albaradei, Somayah, Magana-Mora, Arturo, Thafar, Maha, Uludag, Mahmut, Bajic, Vladimir B., Gojobori, Takashi, Essack, Magbubah, Jankovic, Boris R.
Published in Gene (01.12.2020)
Published in Gene (01.12.2020)
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Journal Article
A novel method for improved accuracy of transcription factor binding site prediction
Khamis, Abdullah M, Motwalli, Olaa, Oliva, Romina, Jankovic, Boris R, Medvedeva, Yulia A, Ashoor, Haitham, Essack, Magbubah, Gao, Xin, Bajic, Vladimir B
Published in Nucleic acids research (06.07.2018)
Published in Nucleic acids research (06.07.2018)
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Journal Article
Hybrid model for efficient prediction of poly(A) signals in human genomic DNA
Albalawi, Fahad, Chahid, Abderrazak, Guo, Xingang, Albaradei, Somayah, Magana-Mora, Arturo, Jankovic, Boris R., Uludag, Mahmut, Van Neste, Christophe, Essack, Magbubah, Laleg-Kirati, Taous-Meriem, Bajic, Vladimir B.
Published in Methods (San Diego, Calif.) (15.08.2019)
Published in Methods (San Diego, Calif.) (15.08.2019)
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Journal Article
Poly(A) motif prediction using spectral latent features from human DNA sequences
Xie, Bo, Jankovic, Boris R, Bajic, Vladimir B, Song, Le, Gao, Xin
Published in Bioinformatics (01.07.2013)
Published in Bioinformatics (01.07.2013)
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Journal Article
Insights into the Transcriptional Architecture of Behavioral Plasticity in the Honey Bee Apis mellifera
Khamis, Abdullah M., Hamilton, Adam R., Medvedeva, Yulia A., Alam, Tanvir, Alam, Intikhab, Essack, Magbubah, Umylny, Boris, Jankovic, Boris R., Naeger, Nicholas L., Suzuki, Makoto, Harbers, Matthias, Robinson, Gene E., Bajic, Vladimir B.
Published in Scientific reports (15.06.2015)
Published in Scientific reports (15.06.2015)
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Journal Article
Core microbial functional activities in ocean environments revealed by global metagenomic profiling analyses
Ferreira, Ari J S, Siam, Rania, Setubal, João C, Moustafa, Ahmed, Sayed, Ahmed, Chambergo, Felipe S, Dawe, Adam S, Ghazy, Mohamed A, Sharaf, Hazem, Ouf, Amged, Alam, Intikhab, Abdel-Haleem, Alyaa M, Lehvaslaiho, Heikki, Ramadan, Eman, Antunes, André, Stingl, Ulrich, Archer, John A C, Jankovic, Boris R, Sogin, Mitchell, Bajic, Vladimir B, El-Dorry, Hamza
Published in PloS one (12.06.2014)
Published in PloS one (12.06.2014)
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Journal Article
Dragon PolyA Spotter: predictor of poly(A) motifs within human genomic DNA sequences
Kalkatawi, Manal, Rangkuti, Farania, Schramm, Michael, Jankovic, Boris R., Kamau, Allan, Chowdhary, Rajesh, Archer, John A. C., Bajic, Vladimir B.
Published in Bioinformatics (01.01.2012)
Published in Bioinformatics (01.01.2012)
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Journal Article
In silico screening for candidate chassis strains of free fatty acid-producing cyanobacteria
Motwalli, Olaa, Essack, Magbubah, Jankovic, Boris R, Ji, Boyang, Liu, Xinyao, Ansari, Hifzur Rahman, Hoehndorf, Robert, Gao, Xin, Arold, Stefan T, Mineta, Katsuhiko, Archer, John A C, Gojobori, Takashi, Mijakovic, Ivan, Bajic, Vladimir B
Published in BMC genomics (05.01.2017)
Published in BMC genomics (05.01.2017)
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Journal Article
Dragon TIS Spotter: an Arabidopsis-derived predictor of translation initiation sites in plants
Magana-Mora, Arturo, Ashoor, Haitham, Jankovic, Boris R, Kamau, Allan, Awara, Karim, Chowdhary, Rajesh, Archer, John A C, Bajic, Vladimir B
Published in Bioinformatics (01.01.2013)
Published in Bioinformatics (01.01.2013)
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Journal Article
Simplified method for predicting a functional class of proteins in transcription factor complexes
Piatek, Marek J, Schramm, Michael C, Burra, Dharani D, Binshbreen, Abdulaziz, Jankovic, Boris R, Chowdhary, Rajesh, Archer, John A C, Bajic, Vladimir B
Published in PloS one (12.07.2013)
Published in PloS one (12.07.2013)
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Journal Article
Structural and functional characteristics of cGMP-dependent methionine oxidation in Arabidopsis thaliana proteins
Marondedze, Claudius, Turek, Ilona, Parrott, Brian, Thomas, Ludivine, Jankovic, Boris, Lilley, Kathryn S, Gehring, Chris
Published in Cell communication and signaling (05.01.2013)
Published in Cell communication and signaling (05.01.2013)
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Journal Article
Exploring the Arabidopsis proteome: influence of protein solubilization buffers on proteome coverage
Marondedze, Claudius, Wong, Aloysius, Groen, Arnoud, Serrano, Natalia, Jankovic, Boris, Lilley, Kathryn, Gehring, Christoph, Thomas, Ludivine
Published in International journal of molecular sciences (31.12.2014)
Published in International journal of molecular sciences (31.12.2014)
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Journal Article
DeepGSR: an optimized deep-learning structure for the recognition of genomic signals and regions
Kalkatawi, Manal, Magana-Mora, Arturo, Jankovic, Boris, Bajic, Vladimir B
Published in Bioinformatics (01.04.2019)
Published in Bioinformatics (01.04.2019)
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Journal Article
A promoter-level mammalian expression atlas
Forrest, Alistair R R, Kawaji, Hideya, Rehli, Michael, Baillie, J Kenneth, de Hoon, Michiel J L, Haberle, Vanja, Lassmann, Timo, Kulakovskiy, Ivan V, Lizio, Marina, Itoh, Masayoshi, Andersson, Robin, Mungall, Christopher J, Meehan, Terrence F, Schmeier, Sebastian, Bertin, Nicolas, Jørgensen, Mette, Dimont, Emmanuel, Arner, Erik, Schmidl, Christian, Schaefer, Ulf, Medvedeva, Yulia A, Plessy, Charles, Vitezic, Morana, Severin, Jessica, Semple, Colin A, Ishizu, Yuri, Young, Robert S, Francescatto, Margherita, Alam, Intikhab, Albanese, Davide, Altschuler, Gabriel M, Arakawa, Takahiro, Archer, John A C, Arner, Peter, Babina, Magda, Rennie, Sarah, Balwierz, Piotr J, Beckhouse, Anthony G, Pradhan-Bhatt, Swati, Blake, Judith A, Blumenthal, Antje, Bodega, Beatrice, Bonetti, Alessandro, Briggs, James, Brombacher, Frank, Burroughs, A Maxwell, Califano, Andrea, Cannistraci, Carlo V, Carbajo, Daniel, Chen, Yun, Chierici, Marco, Ciani, Yari, Clevers, Hans C, Dalla, Emiliano, Davis, Carrie A, Detmar, Michael, Diehl, Alexander D, Dohi, Taeko, Drabløs, Finn, Edge, Albert S B, Edinger, Matthias, Ekwall, Karl, Endoh, Mitsuhiro, Enomoto, Hideki, Fagiolini, Michela, Fairbairn, Lynsey, Fang, Hai, Farach-Carson, Mary C, Faulkner, Geoffrey J, Favorov, Alexander V, Fisher, Malcolm E, Frith, Martin C, Fujita, Rie, Fukuda, Shiro, Furlanello, Cesare, Furino, Masaaki, Furusawa, Jun-ichi, Geijtenbeek, Teunis B, Gibson, Andrew P, Gingeras, Thomas, Goldowitz, Daniel, Gough, Julian, Guhl, Sven, Guler, Reto, Gustincich, Stefano, Ha, Thomas J, Hamaguchi, Masahide, Hara, Mitsuko, Harbers, Matthias, Harshbarger, Jayson, Hasegawa, Akira, Hasegawa, Yuki, Hashimoto, Takehiro, Herlyn, Meenhard, Hitchens, Kelly J, Ho Sui, Shannan J, Hofmann, Oliver M, Hoof, Ilka, Hori, Furni, Huminiecki, Lukasz
Published in Nature (London) (27.03.2014)
Published in Nature (London) (27.03.2014)
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Abstract 3107: Runt-related transcription factor 1 (RUNX1) is involved in transcriptional repression by estrogen receptor and breast cancer cell proliferation
Liu, Ka, Smith, Richard L., Nguyen-Vu, Trang, Candelaria, Nicholes R., Rogerson, Colin M., Johnson, W. Evan, Cheung, Edwin, Jankovic, Boris R., alawi, Wail Ba, Zhang, Jinsong, Bajic, Vladimir B., Lin, Chin-Yo
Published in Cancer research (Chicago, Ill.) (15.04.2013)
Published in Cancer research (Chicago, Ill.) (15.04.2013)
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