Transgenerational transmission of post-zygotic mutations suggests symmetric contribution of first two blastomeres to human germline
Jang, Yeongjun, Tomasini, Livia, Bae, Taejeong, Szekely, Anna, Vaccarino, Flora M., Abyzov, Alexej
Published in Nature communications (23.10.2024)
Published in Nature communications (23.10.2024)
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Dissecting transcriptome signals of anti-PD-1 response in lung adenocarcinoma
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Published in Scientific reports (10.09.2024)
Published in Scientific reports (10.09.2024)
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All2: A tool for selecting mosaic mutations from comprehensive multi-cell comparisons
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Published in PLoS computational biology (01.04.2022)
Published in PLoS computational biology (01.04.2022)
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Comprehensive identification of somatic nucleotide variants in human brain tissue
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Published in Genome Biology (29.03.2021)
Published in Genome Biology (29.03.2021)
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MONGKIE: an integrated tool for network analysis and visualization for multi-omics data
Jang, Yeongjun, Yu, Namhee, Seo, Jihae, Kim, Sun, Lee, Sanghyuk
Published in Biology direct (18.03.2016)
Published in Biology direct (18.03.2016)
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CDA: combinatorial drug discovery using transcriptional response modules
Lee, Ji-Hyun, Kim, Dae Gyu, Bae, Tae Jeong, Rho, Kyoohyoung, Kim, Ji-Tae, Lee, Jong-Jun, Jang, Yeongjun, Kim, Byung Cheol, Park, Kyoung Mii, Kim, Sunghoon
Published in PloS one (08.08.2012)
Published in PloS one (08.08.2012)
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An integrated clinical and genomic information system for cancer precision medicine
Jang, Yeongjun, Choi, Taekjin, Kim, Jongho, Park, Jisub, Seo, Jihae, Kim, Sangok, Kwon, Yeajee, Lee, Seungjae, Lee, Sanghyuk
Published in BMC medical genomics (20.04.2018)
Published in BMC medical genomics (20.04.2018)
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CaPSSA: visual evaluation of cancer biomarker genes for patient stratification and survival analysis using mutation and expression data
Jang, Yeongjun, Seo, Jihae, Jang, Insu, Lee, Byungwook, Kim, Sun, Lee, Sanghyuk
Published in Bioinformatics (Oxford, England) (15.12.2019)
Published in Bioinformatics (Oxford, England) (15.12.2019)
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Early developmental asymmetries in cell lineage trees in living individuals
Fasching, Liana, Jang, Yeongjun, Tomasi, Simone, Schreiner, Jeremy, Tomasini, Livia, Brady, Melanie V, Bae, Taejeong, Sarangi, Vivekananda, Vasmatzis, Nikolaos, Wang, Yifan, Szekely, Anna, Fernandez, Thomas V, Leckman, James F, Abyzov, Alexej, Vaccarino, Flora M
Published in Science (American Association for the Advancement of Science) (19.03.2021)
Published in Science (American Association for the Advancement of Science) (19.03.2021)
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Modeling idiopathic autism in forebrain organoids reveals an imbalance of excitatory cortical neuron subtypes during early neurogenesis
Jourdon, Alexandre, Wu, Feinan, Mariani, Jessica, Capauto, Davide, Norton, Scott, Tomasini, Livia, Amiri, Anahita, Suvakov, Milovan, Schreiner, Jeremy D., Jang, Yeongjun, Panda, Arijit, Nguyen, Cindy Khanh, Cummings, Elise M., Han, Gloria, Powell, Kelly, Szekely, Anna, McPartland, James C., Pelphrey, Kevin, Chawarska, Katarzyna, Ventola, Pamela, Abyzov, Alexej, Vaccarino, Flora M.
Published in Nature neuroscience (01.09.2023)
Published in Nature neuroscience (01.09.2023)
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Efficient reconstruction of cell lineage trees for cell ancestry and cancer
Jang, Yeongjun, Fasching, Liana, Bae, Taejeong, Tomasini, Livia, Schreiner, Jeremy, Szekely, Anna, Fernandez, Thomas V, Leckman, James F, Vaccarino, Flora M, Abyzov, Alexej
Published in Nucleic acids research (09.06.2023)
Published in Nucleic acids research (09.06.2023)
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Correction: All.sup.2: A tool for selecting mosaic mutations from comprehensive multi-cell comparisons
Sarangi, Vivekananda, Jang, Yeongjun, Suvakov, Milovan, Bae, Taejeong, Fasching, Liana, Sekar, Shobana, Tomasini, Livia, Mariani, Jessica, Vaccarino, Flora M, Abyzov, Alexej
Published in PLoS computational biology (15.11.2022)
Published in PLoS computational biology (15.11.2022)
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Correction: All2: A tool for selecting mosaic mutations from comprehensive multi-cell comparisons
Sarangi, Vivekananda, Jang, Yeongjun, Suvakov, Milovan, Bae, Taejeong, Fasching, Liana, Sekar, Shobana, Tomasini, Livia, Mariani, Jessica, Vaccarino, Flora M., Abyzov, Alexej
Published in PLoS computational biology (15.11.2022)
Published in PLoS computational biology (15.11.2022)
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Journal Article
All.sup.2: A tool for selecting mosaic mutations from comprehensive multi-cell comparisons
Sarangi, Vivekananda, Jang, Yeongjun, Suvakov, Milovan, Bae, Taejeong, Fasching, Liana, Sekar, Shobana, Tomasini, Livia, Mariani, Jessica, Vaccarino, Flora M, Abyzov, Alexej
Published in PLoS computational biology (20.04.2022)
Published in PLoS computational biology (20.04.2022)
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Complex mosaic structural variations in human fetal brains
Sekar, Shobana, Tomasini, Livia, Proukakis, Christos, Bae, Taejeong, Manlove, Logan, Jang, Yeongjun, Scuderi, Soraya, Zhou, Bo, Kalyva, Maria, Amiri, Anahita, Mariani, Jessica, Sedlazeck, Fritz J, Urban, Alexander E, Vaccarino, Flora M, Abyzov, Alexej
Published in Genome research (01.12.2020)
Published in Genome research (01.12.2020)
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Analysis of somatic mutations in 131 human brains reveals aging-associated hypermutability
Bae, Taejeong, Fasching, Liana, Wang, Yifan, Shin, Joo Heon, Suvakov, Milovan, Jang, Yeongjun, Norton, Scott, Dias, Caroline, Mariani, Jessica, Jourdon, Alexandre, Wu, Feinan, Panda, Arijit, Pattni, Reenal, Chahine, Yasmine, Yeh, Rebecca, Roberts, Rosalinda C, Huttner, Anita, Kleinman, Joel E, Hyde, Thomas M, Straub, Richard E, Walsh, Christopher A, Urban, Alexander E, Leckman, James F, Weinberger, Daniel R, Vaccarino, Flora M, Abyzov, Alexej
Published in Science (American Association for the Advancement of Science) (29.07.2022)
Published in Science (American Association for the Advancement of Science) (29.07.2022)
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Author Correction: Modeling idiopathic autism in forebrain organoids reveals an imbalance of excitatory cortical neuron subtypes during early neurogenesis
Jourdon, Alexandre, Wu, Feinan, Mariani, Jessica, Capauto, Davide, Norton, Scott, Tomasini, Livia, Amiri, Anahita, Suvakov, Milovan, Schreiner, Jeremy D., Jang, Yeongjun, Panda, Arijit, Nguyen, Cindy Khanh, Cummings, Elise M., Han, Gloria, Powell, Kelly, Szekely, Anna, McPartland, James C., Pelphrey, Kevin, Chawarska, Katarzyna, Ventola, Pamela, Abyzov, Alexej, Vaccarino, Flora M.
Published in Nature neuroscience (01.11.2023)
Published in Nature neuroscience (01.11.2023)
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Somatic mosaicism reveals clonal distributions of neocortical development
Breuss, Martin W., Yang, Xiaoxu, Schlachetzki, Johannes C. M., Antaki, Danny, Lana, Addison J., Xu, Xin, Chung, Changuk, Chai, Guoliang, Stanley, Valentina, Song, Qiong, Newmeyer, Traci F., Nguyen, An, O’Brien, Sydney, Hoeksema, Marten A., Cao, Beibei, Nott, Alexi, McEvoy-Venneri, Jennifer, Pasillas, Martina P., Barton, Scott T., Copeland, Brett R., Nahas, Shareef, Van Der Kraan, Lucitia, Ding, Yan, Glass, Christopher K., Gleeson, Joseph G.
Published in Nature (London) (28.04.2022)
Published in Nature (London) (28.04.2022)
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Control-independent mosaic single nucleotide variant detection with DeepMosaic
Yang, Xiaoxu, Xu, Xin, Breuss, Martin W., Antaki, Danny, Ball, Laurel L., Chung, Changuk, Shen, Jiawei, Li, Chen, George, Renee D., Wang, Yifan, Bae, Taejeong, Cheng, Yuhe, Abyzov, Alexej, Wei, Liping, Alexandrov, Ludmil B., Sebat, Jonathan L., Gleeson, Joseph G.
Published in Nature biotechnology (01.06.2023)
Published in Nature biotechnology (01.06.2023)
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