A computational framework for modelling infectious disease policy based on age and household structure with applications to the COVID-19 pandemic
Hilton, Joe, Riley, Heather, Pellis, Lorenzo, Aziza, Rabia, Brand, Samuel P. C, K. Kombe, Ivy, Ojal, John, Parisi, Andrea, Keeling, Matt J, Nokes, D. James, Manson-Sawko, Robert, House, Thomas
Published in PLoS computational biology (06.09.2022)
Published in PLoS computational biology (06.09.2022)
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Local evolutionary patterns of human respiratory syncytial virus derived from whole-genome sequencing
Agoti, Charles N, Otieno, James R, Munywoki, Patrick K, Mwihuri, Alexander G, Cane, Patricia A, Nokes, D James, Kellam, Paul, Cotten, Matthew
Published in Journal of virology (01.04.2015)
Published in Journal of virology (01.04.2015)
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Human Coronavirus NL63 Molecular Epidemiology and Evolutionary Patterns in Rural Coastal Kenya
Kiyuka, Patience K, Agoti, Charles N, Munywoki, Patrick K, Njeru, Regina, Bett, Anne, Otieno, James R, Otieno, Grieven P, Kamau, Everlyn, Clark, Taane G, van der Hoek, Lia, Kellam, Paul, Nokes, D James, Cotten, Matthew
Published in The Journal of Infectious Diseases (05.05.2018)
Published in The Journal of Infectious Diseases (05.05.2018)
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COVID-19 transmission dynamics underlying epidemic waves in Kenya
Brand, Samuel P C, Ojal, John, Aziza, Rabia, Were, Vincent, Okiro, Emelda A, Kombe, Ivy K, Mburu, Caroline, Ogero, Morris, Agweyu, Ambrose, Warimwe, George M, Nyagwange, James, Karanja, Henry, Gitonga, John N, Mugo, Daisy, Uyoga, Sophie, Adetifa, Ifedayo M O, Scott, J Anthony G, Otieno, Edward, Murunga, Nickson, Otiende, Mark, Ochola-Oyier, Lynette I, Agoti, Charles N, Githinji, George, Kasera, Kadondi, Amoth, Patrick, Mwangangi, Mercy, Aman, Rashid, Ng'ang'a, Wangari, Tsofa, Benjamin, Bejon, Philip, Keeling, Matt J, Nokes, D James, Barasa, Edwine
Published in Science (American Association for the Advancement of Science) (19.11.2021)
Published in Science (American Association for the Advancement of Science) (19.11.2021)
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The role of vaccination and public awareness in forecasts of Mpox incidence in the United Kingdom
Brand, Samuel P C, Cavallaro, Massimo, Cumming, Fergus, Turner, Charlie, Florence, Isaac, Blomquist, Paula, Hilton, Joe, Guzman-Rincon, Laura M, House, Thomas, Nokes, D James, Keeling, Matt J
Published in Nature communications (11.07.2023)
Published in Nature communications (11.07.2023)
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Rapid spread and diversification of respiratory syncytial virus genotype ON1, Kenya
Agoti, Charles N, Otieno, James R, Gitahi, Caroline W, Cane, Patricia A, Nokes, D James
Published in Emerging infectious diseases (01.06.2014)
Published in Emerging infectious diseases (01.06.2014)
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Evolution of respiratory syncytial virus genotype BA in Kilifi, Kenya, 15 years on
Kamau, Everlyn, Otieno, James R, Lewa, Clement S, Mwema, Anthony, Murunga, Nickson, Nokes, D James, Agoti, Charles N
Published in Scientific reports (03.12.2020)
Published in Scientific reports (03.12.2020)
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Airway response to respiratory syncytial virus has incidental antibacterial effects
Sande, Charles J, Njunge, James M, Mwongeli Ngoi, Joyce, Mutunga, Martin N, Chege, Timothy, Gicheru, Elijah T, Gardiner, Elizabeth M, Gwela, Agnes, Green, Christopher A, Drysdale, Simon B, Berkley, James A, Nokes, D James, Pollard, Andrew J
Published in Nature communications (17.05.2019)
Published in Nature communications (17.05.2019)
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Individual's daily behaviour and intergenerational mixing in different social contexts of Kenya
Del Fava, Emanuele, Adema, Irene, Kiti, Moses C, Poletti, Piero, Merler, Stefano, Nokes, D James, Manfredi, Piero, Melegaro, Alessia
Published in Scientific reports (03.11.2021)
Published in Scientific reports (03.11.2021)
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Spread and Evolution of Respiratory Syncytial Virus A Genotype ON1, Coastal Kenya, 2010-2015
Otieno, James R, Kamau, Everlyn M, Agoti, Charles N, Lewa, Clement, Otieno, Grieven, Bett, Ann, Ngama, Mwanajuma, Cane, Patricia A, Nokes, D James
Published in Emerging infectious diseases (01.02.2017)
Published in Emerging infectious diseases (01.02.2017)
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Integrating epidemiological and genetic data with different sampling intensities into a dynamic model of respiratory syncytial virus transmission
Kombe, Ivy K, Agoti, Charles N, Munywoki, Patrick K, Baguelin, Marc, Nokes, D James, Medley, Graham F
Published in Scientific reports (14.01.2021)
Published in Scientific reports (14.01.2021)
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Identification of missed viruses by metagenomic sequencing of clinical respiratory samples from Kenya
Phan, My V T, Agoti, Charles N, Munywoki, Patrick K, Otieno, Grieven P, Ngama, Mwanajuma, Kellam, Paul, Cotten, Matthew, Nokes, D James
Published in Scientific reports (07.01.2022)
Published in Scientific reports (07.01.2022)
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Estimating the cost-effectiveness of maternal vaccination and monoclonal antibodies for respiratory syncytial virus in Kenya and South Africa
Koltai, Mihaly, Moyes, Jocelyn, Nyawanda, Bryan, Nyiro, Joyce, Munywoki, Patrick K, Tempia, Stefano, Li, Xiao, Antillon, Marina, Bilcke, Joke, Flasche, Stefan, Beutels, Philippe, Nokes, D James, Cohen, Cheryl, Jit, Mark
Published in BMC medicine (31.03.2023)
Published in BMC medicine (31.03.2023)
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Defining the vaccination window for respiratory syncytial virus (RSV) using age-seroprevalence data for children in Kilifi, Kenya
Nyiro, Joyce U, Kombe, Ivy K, Sande, Charles J, Kipkoech, James, Kiyuka, Patience K, Onyango, Clayton O, Munywoki, Patrick K, Kinyanjui, Timothy M, Nokes, D James
Published in PloS one (22.05.2017)
Published in PloS one (22.05.2017)
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Effectiveness of Monovalent Rotavirus Vaccine Against Hospitalization With Acute Rotavirus Gastroenteritis in Kenyan Children
Khagayi, Sammy, Omore, Richard, Otieno, Grieven P, Ogwel, Billy, Ochieng, John B, Juma, Jane, Apondi, Evans, Bigogo, Godfrey, Onyango, Clayton, Ngama, Mwanajuma, Njeru, Regina, Owor, Betty E, Mwanga, Mike J, Addo, Yaw, Tabu, Collins, Amwayi, Anyangu, Mwenda, Jason M, Tate, Jacqueline E, Parashar, Umesh D, Breiman, Robert F, Nokes, D James, Verani, Jennifer R
Published in Clinical infectious diseases (23.05.2020)
Published in Clinical infectious diseases (23.05.2020)
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The level and duration of RSV-specific maternal IgG in infants in Kilifi Kenya
Ochola, Rachel, Sande, Charles, Fegan, Gregory, Scott, Paul D, Medley, Graham F, Cane, Patricia A, Nokes, D James
Published in PloS one (02.12.2009)
Published in PloS one (02.12.2009)
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Phylogeography and reassortment patterns of human influenza A viruses in sub-Saharan Africa
Owuor, D. Collins, de Laurent, Zaydah R, Oketch, John W, Murunga, Nickson, Otieno, James R, Nabakooza, Grace, Chaves, Sandra S, Nokes, D. James, Agoti, Charles N
Published in Scientific reports (16.08.2024)
Published in Scientific reports (16.08.2024)
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Frequent Asymptomatic Respiratory Syncytial Virus Infections During an Epidemic in a Rural Kenyan Household Cohort
Munywoki, Patrick K., Koech, Dorothy C., Agoti, Charles N., Bett, Ann, Cane, Patricia A., Medley, Graham F., Nokes, D. James
Published in The Journal of infectious diseases (01.12.2015)
Published in The Journal of infectious diseases (01.12.2015)
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