An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations
Clavijo, Bernardo J, Venturini, Luca, Schudoma, Christian, Accinelli, Gonzalo Garcia, Kaithakottil, Gemy, Wright, Jonathan, Borrill, Philippa, Kettleborough, George, Heavens, Darren, Chapman, Helen, Lipscombe, James, Barker, Tom, Lu, Fu-Hao, McKenzie, Neil, Raats, Dina, Ramirez-Gonzalez, Ricardo H, Coince, Aurore, Peel, Ned, Percival-Alwyn, Lawrence, Duncan, Owen, Trösch, Josua, Yu, Guotai, Bolser, Dan M, Namaati, Guy, Kerhornou, Arnaud, Spannagl, Manuel, Gundlach, Heidrun, Haberer, Georg, Davey, Robert P, Fosker, Christine, Palma, Federica Di, Phillips, Andrew L, Millar, A Harvey, Kersey, Paul J, Uauy, Cristobal, Krasileva, Ksenia V, Swarbreck, David, Bevan, Michael W, Clark, Matthew D
Published in Genome research (01.05.2017)
Published in Genome research (01.05.2017)
Get full text
Journal Article
Identification of a non-canonical ciliate nuclear genetic code where UAA and UAG code for different amino acids
McGowan, Jamie, Kilias, Estelle S, Alacid, Elisabet, Lipscombe, James, Jenkins, Benjamin H, Gharbi, Karim, Kaithakottil, Gemy G, Macaulay, Iain C, McTaggart, Seanna, Warring, Sally D, Richards, Thomas A, Hall, Neil, Swarbreck, David
Published in PLoS genetics (05.10.2023)
Published in PLoS genetics (05.10.2023)
Get full text
Journal Article
Computational prediction and experimental validation of Salmonella Typhimurium SopE-mediated fine-tuning of autophagy in intestinal epithelial cells
Demeter, Amanda, Jacomin, Anne-Claire, Gul, Lejla, Lister, Ashleigh, Lipscombe, James, Invernizzi, Rachele, Branchu, Priscilla, Macaulay, Iain, Nezis, Ioannis P., Kingsley, Robert A., Korcsmaros, Tamas, Hautefort, Isabelle
Published in Frontiers in cellular and infection microbiology (17.08.2022)
Published in Frontiers in cellular and infection microbiology (17.08.2022)
Get full text
Journal Article
High-throughput retrotransposon-based fluorescent markers: improved information content and allele discrimination
Knox, Maggie, Moreau, Carol, Lipscombe, James, Baker, David, Ellis, Noel
Published in Plant methods (28.07.2009)
Published in Plant methods (28.07.2009)
Get full text
Journal Article
Defining Cell Identity with Single‐Cell Omics
Mincarelli, Laura, Lister, Ashleigh, Lipscombe, James, Macaulay, Iain C.
Published in Proteomics (Weinheim) (01.09.2018)
Published in Proteomics (Weinheim) (01.09.2018)
Get full text
Journal Article
Identification of a non-canonical ciliate nuclear genetic code where UAA and UAG code for different amino acids
Jamie McGowan, Estelle S. Kilias, Elisabet Alacid, James Lipscombe, Benjamin H. Jenkins, Karim Gharbi, Gemy G. Kaithakottil, Iain C. Macaulay, Seanna McTaggart, Sally D. Warring, Thomas A. Richards, Neil Hall, David Swarbreck
Published in PLoS genetics (01.10.2023)
Get full text
Published in PLoS genetics (01.10.2023)
Journal Article
An accessible, efficient and global approach for the large-scale sequencing of bacterial genomes
Perez-Sepulveda, Blanca M, Heavens, Darren, Pulford, Caisey V, Predeus, Alexander V, Low, Ross, Webster, Hermione, Dykes, Gregory F, Schudoma, Christian, Rowe, Will, Lipscombe, James, Watkins, Chris, Kumwenda, Benjamin, Shearer, Neil, Costigan, Karl, Baker, Kate S, Feasey, Nicholas A, Hinton, Jay C D, Hall, Neil
Published in Genome Biology (21.12.2021)
Published in Genome Biology (21.12.2021)
Get full text
Journal Article
How to sequence 10,000 bacterial genomes and retain your sanity: an accessible, efficient and global approach
Perez-Sepulveda, Blanca, Heavens, Darren, Pulford, Caisey, Predeus, Alexander, Low, Ross, Webster, Hermione, Dykes, Gregory, Schudoma, Christian, Rowe, Will, Lipscombe, James, Watkins, Chris, Kumwenda, Benjamin, Shearer, Neil, Costigan, Karl, Baker, Kate, Feasey, Nicholas, Hinton, Jay, Hall, Neil
Published in Access microbiology (18.05.2022)
Published in Access microbiology (18.05.2022)
Get full text
Journal Article
Chromosome-level genome sequence of the Genetically Improved Farmed Tilapia (GIFT, Oreochromis niloticus) highlights regions of introgression with O. mossambicus
Graham John Etherington, Nash, Will, Ciezarek, Adam, Mehta, Tarang K, Augustin Barria Gonzalez, Penaloza, Carolina, Khan, Mohd Gq, Durrant, Alex, rester, Nicole, Fraser, Fiona, Irish, Naomi, Kaithakottil, Gemy, Lipscombe, James, Trinh Trong, Watkins, Chris, Swarbreck, David, Angiolini, Emily, Cnaani, Avner, Gharbi, Karim, Houston, Ross D, Benzie, John, Haerty, Wilfried
Published in bioRxiv (10.05.2022)
Published in bioRxiv (10.05.2022)
Get full text
Paper
Genomic and phylogenetic analysis of Salmonella Typhimurium and its monophasic variants responsible for invasive endemic infections in Colombia
Li, Yan, Pulford, Caisey V, Díaz, Paula, Perez-Sepulveda, Blanca M, Duarte, Carolina, Predeus, Alexander V, Wiesner, Magdalena, Heavens, Darren, Low, Ross, Schudoma, Christian, Lipscombe, James, Montaño, Angeline, Hall, Neil, Moreno, Jaime, Hinton, Jay C D
Published in bioRxiv (25.03.2019)
Published in bioRxiv (25.03.2019)
Get full text
Paper
An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations
Clavijo, Bernardo J, Venturini, Luca, Schudoma, Christian, Gonzalo Garcia Accinelli, Kaithakottil, Gemy, Wright, Jonathan, Borrill, Philippa, Kettleborough, George, Heavens, Darren, Chapman, Helen, Lipscombe, James, Barker, Tom, Fu-Hao, Lu, Mckenzie, Neil, Raats, Dina, Ramirez-Gonzalez, Ricardo H, Coince, Aurore, Peel, Ned, Percival-Alwyn, Lawrence, Duncan, Owen, Josua Tr sch, Yu, Goutai, Bolser, Dan, Naamati, Guy, Kerhornou, Arnaud, Spannagl, Manuel, Gundlach, Heidrun, Haberer, Georg, Davey, Robert P, Fosker, Christine, Federica Di Palma, Phillips, Andrew, A Harvey Millar, Kersey, Paul J, Uauy, Cristobal, Krasileva, Ksenia V, Swarbreck, David, Bevan, Michael W, Clark, Matthew D
Published in bioRxiv (04.11.2016)
Published in bioRxiv (04.11.2016)
Get full text
Paper