The GEA pipeline for characterizing Escherichia coli and Salmonella genomes
Dickey, Aaron M., Schmidt, John W., Bono, James L., Guragain, Manita
Published in Scientific reports (10.06.2024)
Published in Scientific reports (10.06.2024)
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Shiga toxin sub-type 2a increases the efficiency of Escherichia coli O157 transmission between animals and restricts epithelial regeneration in bovine enteroids
Fitzgerald, Stephen F, Beckett, Amy E, Palarea-Albaladejo, Javier, McAteer, Sean, Shaaban, Sharif, Morgan, Jason, Ahmad, Nur Indah, Young, Rachel, Mabbott, Neil A, Morrison, Liam, Bono, James L, Gally, David L, McNeilly, Tom N
Published in PLoS pathogens (03.10.2019)
Published in PLoS pathogens (03.10.2019)
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Whole genome sequencing of Moraxella bovis strains from North America reveals two genotypes with different genetic determinants
Wynn, Emily L, Hille, Matthew M, Loy, John Dustin, Schuller, Gennie, Kuhn, Kristen L, Dickey, Aaron M, Bono, James L, Clawson, Michael L
Published in BMC microbiology (21.10.2022)
Published in BMC microbiology (21.10.2022)
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Effect of proximity to a cattle feedlot on Escherichia coli O157:H7 contamination of leafy greens and evaluation of the potential for airborne transmission
Berry, Elaine D, Wells, James E, Bono, James L, Woodbury, Bryan L, Kalchayanand, Norasak, Norman, Keri N, Suslow, Trevor V, López-Velasco, Gabriela, Millner, Patricia D
Published in Applied and Environmental Microbiology (01.02.2015)
Published in Applied and Environmental Microbiology (01.02.2015)
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Rates of evolutionary change of resident Escherichia coli O157:H7 differ within the same ecological niche
Weinroth, Margaret D, Clawson, Michael L, Arthur, Terrance M, Wells, James E, Brichta-Harhay, Dayna M, Strachan, Norval, Bono, James L
Published in BMC genomics (07.04.2022)
Published in BMC genomics (07.04.2022)
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Genomic analysis of shiga toxin-containing Escherichia coli O157:H7 isolated from Argentinean cattle
Amadio, Ariel, Bono, James L, Irazoqui, Matías, Larzábal, Mariano, Marques da Silva, Wanderson, Eberhardt, María Florencia, Riviere, Nahuel A, Gally, David, Manning, Shannon D, Cataldi, Angel
Published in PloS one (28.10.2021)
Published in PloS one (28.10.2021)
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Escherichia coli O157:H7 tir 255 T > A allele strains differ in chromosomal and plasmid composition
Weinroth, Margaret D, Clawson, Michael L, Harhay, Gregory P, Eppinger, Mark, Harhay, Dayna M, Smith, Timothy P L, Bono, James L
Published in Frontiers in microbiology (15.12.2023)
Published in Frontiers in microbiology (15.12.2023)
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Animal-to-Animal Variation in Fecal Microbial Diversity among Beef Cattle
Durso, Lisa M, Harhay, Gregory P, Smith, Timothy P.L, Bono, James L, DeSantis, Todd Z, Harhay, Dayna M, Andersen, Gary L, Keen, James E, Laegreid, William W, Clawson, Michael L
Published in Applied and Environmental Microbiology (01.07.2010)
Published in Applied and Environmental Microbiology (01.07.2010)
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Association of Nucleotide Polymorphisms within the O-Antigen Gene Cluster of Escherichia coli O26, O45, O103, O111, O121, and O145 with Serogroups and Genetic Subtypes
Norman, Keri N, Strockbine, Nancy A, Bono, James L
Published in Applied and Environmental Microbiology (01.09.2012)
Published in Applied and Environmental Microbiology (01.09.2012)
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Genomic-based identification of environmental and clinical Listeria monocytogenes strains associated with an abortion outbreak in beef heifers
Whitman, Katherine J, Bono, James L, Clawson, Michael L, Loy, John D, Bosilevac, Joseph M, Arthur, Terrance M, Ondrak, Jeff D
Published in BMC veterinary research (22.02.2020)
Published in BMC veterinary research (22.02.2020)
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Pathogenomes of Atypical Non-shigatoxigenic Escherichia coli NSF/SF O157:H7/NM: Comprehensive Phylogenomic Analysis Using Closed Genomes
Nyong, Emmanuel C, Zaia, Sam R, Allué-Guardia, Anna, Rodriguez, Armando L, Irion-Byrd, Zaina, Koenig, Sara S K, Feng, Peter, Bono, James L, Eppinger, Mark
Published in Frontiers in microbiology (15.04.2020)
Published in Frontiers in microbiology (15.04.2020)
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Differences between predicted outer membrane proteins of genotype 1 and 2 Mannheimia haemolytica
Clawson, Michael L, Schuller, Gennie, Dickey, Aaron M, Bono, James L, Murray, Robert W, Sweeney, Michael T, Apley, Michael D, DeDonder, Keith D, Capik, Sarah F, Larson, Robert L, Lubbers, Brian V, White, Brad J, Blom, Jochen, Chitko-McKown, Carol G, Brichta-Harhay, Dayna M, Smith, Timothy P L
Published in BMC microbiology (12.08.2020)
Published in BMC microbiology (12.08.2020)
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Genome sequencing and comparative genomics provides insights on the evolutionary dynamics and pathogenic potential of different H-serotypes of Shiga toxin-producing Escherichia coli O104
Yan, Xianghe, Fratamico, Pina M, Bono, James L, Baranzoni, Gian Marco, Chen, Chin-Yi
Published in BMC microbiology (03.04.2015)
Published in BMC microbiology (03.04.2015)
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Pathogenomes of Shiga Toxin Positive and Negative Escherichia coli O157:H7 Strains TT12A and TT12B: Comprehensive Phylogenomic Analysis Using Closed Genomes
Kalalah, Anwar A, Koenig, Sara S K, Feng, Peter, Bosilevac, Joseph M, Bono, James L, Eppinger, Mark
Published in Microorganisms (Basel) (29.03.2024)
Published in Microorganisms (Basel) (29.03.2024)
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Comparative genomics of the Campylobacter lari group
Miller, William G, Yee, Emma, Chapman, Mary H, Smith, Timothy P L, Bono, James L, Huynh, Steven, Parker, Craig T, Vandamme, Peter, Luong, Khai, Korlach, Jonas
Published in Genome biology and evolution (01.12.2014)
Published in Genome biology and evolution (01.12.2014)
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Genomic and Phenotypic Characterization of Shiga Toxin-Producing Escherichia albertii Strains Isolated from Wild Birds in a Major Agricultural Region in California
Carter, Michelle Qiu, Quiñones, Beatriz, He, Xiaohua, Pham, Antares, Carychao, Diana, Cooley, Michael B., Lo, Chien-Chi, Chain, Patrick S. G., Lindsey, Rebecca L., Bono, James L.
Published in Microorganisms (Basel) (01.11.2023)
Published in Microorganisms (Basel) (01.11.2023)
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