Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex
Nowakowski, Tomasz J., Bhaduri, Aparna, Pollen, Alex A., Alvarado, Beatriz, Mostajo-Radji, Mohammed A., Di Lullo, Elizabeth, Haeussler, Maximilian, Sandoval-Espinosa, Carmen, Liu, Siyuan John, Velmeshev, Dmitry, Ounadjela, Johain Ryad, Shuga, Joe, Wang, Xiaohui, Lim, Daniel A., West, Jay A., Leyrat, Anne A., Kent, W. James, Kriegstein, Arnold R.
Published in Science (American Association for the Advancement of Science) (08.12.2017)
Published in Science (American Association for the Advancement of Science) (08.12.2017)
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Journal Article
The UCSC Genome Browser database: 2019 update
Haeussler, Maximilian, Zweig, Ann S, Tyner, Cath, Speir, Matthew L, Rosenbloom, Kate R, Raney, Brian J, Lee, Christopher M, Lee, Brian T, Hinrichs, Angie S, Gonzalez, Jairo Navarro, Gibson, David, Diekhans, Mark, Clawson, Hiram, Casper, Jonathan, Barber, Galt P, Haussler, David, Kuhn, Robert M, Kent, W James
Published in Nucleic acids research (08.01.2019)
Published in Nucleic acids research (08.01.2019)
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Journal Article
The UCSC Genome Browser database: 2018 update
Casper, Jonathan, Zweig, Ann S, Villarreal, Chris, Tyner, Cath, Speir, Matthew L, Rosenbloom, Kate R, Raney, Brian J, Lee, Christopher M, Lee, Brian T, Karolchik, Donna, Hinrichs, Angie S, Haeussler, Maximilian, Guruvadoo, Luvina, Navarro Gonzalez, Jairo, Gibson, David, Fiddes, Ian T, Eisenhart, Christopher, Diekhans, Mark, Clawson, Hiram, Barber, Galt P, Armstrong, Joel, Haussler, David, Kuhn, Robert M, Kent, W James
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
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Journal Article
The UCSC Genome Browser database: 2023 update
Nassar, Luis R, Barber, Galt P, Benet-Pagès, Anna, Casper, Jonathan, Clawson, Hiram, Diekhans, Mark, Fischer, Clay, Gonzalez, Jairo Navarro, Hinrichs, Angie S, Lee, Brian T, Lee, Christopher M, Muthuraman, Pranav, Nguy, Beagan, Pereira, Tiana, Nejad, Parisa, Perez, Gerardo, Raney, Brian J, Schmelter, Daniel, Speir, Matthew L, Wick, Brittney D, Zweig, Ann S, Haussler, David, Kuhn, Robert M, Haeussler, Maximilian, Kent, W James
Published in Nucleic acids research (06.01.2023)
Published in Nucleic acids research (06.01.2023)
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Journal Article
The UCSC genome browser and associated tools
Kuhn, Robert M, Haussler, David, Kent, W James
Published in Briefings in bioinformatics (01.03.2013)
Published in Briefings in bioinformatics (01.03.2013)
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Journal Article
UCSC Genome Browser enters 20th year
Lee, Christopher M, Barber, Galt P, Casper, Jonathan, Clawson, Hiram, Diekhans, Mark, Gonzalez, Jairo Navarro, Hinrichs, Angie S, Lee, Brian T, Nassar, Luis R, Powell, Conner C, Raney, Brian J, Rosenbloom, Kate R, Schmelter, Daniel, Speir, Matthew L, Zweig, Ann S, Haussler, David, Haeussler, Maximilian, Kuhn, Robert M, Kent, W James
Published in Nucleic acids research (08.01.2020)
Published in Nucleic acids research (08.01.2020)
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Journal Article
The UCSC Genome Browser database: 2021 update
Navarro Gonzalez, Jairo, Zweig, Ann S, Speir, Matthew L, Schmelter, Daniel, Rosenbloom, Kate R, Raney, Brian J, Powell, Conner C, Nassar, Luis R, Maulding, Nathan D, Lee, Christopher M, Lee, Brian T, Hinrichs, Angie S, Fyfe, Alastair C, Fernandes, Jason D, Diekhans, Mark, Clawson, Hiram, Casper, Jonathan, Benet-Pagès, Anna, Barber, Galt P, Haussler, David, Kuhn, Robert M, Haeussler, Maximilian, Kent, W James
Published in Nucleic Acids Research (08.01.2021)
Published in Nucleic Acids Research (08.01.2021)
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Journal Article
Web Resource
The UCSC Genome Browser database: 2017 update
Tyner, Cath, Barber, Galt P, Casper, Jonathan, Clawson, Hiram, Diekhans, Mark, Eisenhart, Christopher, Fischer, Clayton M, Gibson, David, Gonzalez, Jairo Navarro, Guruvadoo, Luvina, Haeussler, Maximilian, Heitner, Steve, Hinrichs, Angie S, Karolchik, Donna, Lee, Brian T, Lee, Christopher M, Nejad, Parisa, Raney, Brian J, Rosenbloom, Kate R, Speir, Matthew L, Villarreal, Chris, Vivian, John, Zweig, Ann S, Haussler, David, Kuhn, Robert M, Kent, W James
Published in Nucleic acids research (04.01.2017)
Published in Nucleic acids research (04.01.2017)
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Journal Article
The UCSC Genome Browser database: 2022 update
Lee, Brian T, Barber, Galt P, Benet-Pagès, Anna, Casper, Jonathan, Clawson, Hiram, Diekhans, Mark, Fischer, Clay, Gonzalez, Jairo Navarro, Hinrichs, Angie S, Lee, Christopher M, Muthuraman, Pranav, Nassar, Luis R, Nguy, Beagan, Pereira, Tiana, Perez, Gerardo, Raney, Brian J, Rosenbloom, Kate R, Schmelter, Daniel, Speir, Matthew L, Wick, Brittney D, Zweig, Ann S, Haussler, David, Kuhn, Robert M, Haeussler, Maximilian, Kent, W James
Published in Nucleic acids research (07.01.2022)
Published in Nucleic acids research (07.01.2022)
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Journal Article
Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC Genome Browser
Raney, Brian J, Dreszer, Timothy R, Barber, Galt P, Clawson, Hiram, Fujita, Pauline A, Wang, Ting, Nguyen, Ngan, Paten, Benedict, Zweig, Ann S, Karolchik, Donna, Kent, W James
Published in Bioinformatics (01.04.2014)
Published in Bioinformatics (01.04.2014)
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Journal Article
The UCSC Known Genes
Hsu, Fan, Kent, W. James, Clawson, Hiram, Kuhn, Robert M., Diekhans, Mark, Haussler, David
Published in Bioinformatics (01.05.2006)
Published in Bioinformatics (01.05.2006)
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Journal Article
Centromere reference models for human chromosomes X and Y satellite arrays
Miga, Karen H, Newton, Yulia, Jain, Miten, Altemose, Nicolas, Willard, Huntington F, Kent, W James
Published in Genome research (01.04.2014)
Published in Genome research (01.04.2014)
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Journal Article
The UCSC Genome Browser database: 2024 update
Raney, Brian J, Barber, Galt P, Benet-Pagès, Anna, Casper, Jonathan, Clawson, Hiram, Cline, Melissa S, Diekhans, Mark, Fischer, Clayton, Navarro Gonzalez, Jairo, Hickey, Glenn, Hinrichs, Angie S, Kuhn, Robert M, Lee, Brian T, Lee, Christopher M, Le Mercier, Phillipe, Miga, Karen H, Nassar, Luis R, Nejad, Parisa, Paten, Benedict, Perez, Gerardo, Schmelter, Daniel, Speir, Matthew L, Wick, Brittney D, Zweig, Ann S, Haussler, David, Kent, W James, Haeussler, Maximilian
Published in Nucleic acids research (05.01.2024)
Published in Nucleic acids research (05.01.2024)
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Journal Article
ENCODE data in the UCSC Genome Browser: year 5 update
Rosenbloom, Kate R, Sloan, Cricket A, Malladi, Venkat S, Dreszer, Timothy R, Learned, Katrina, Kirkup, Vanessa M, Wong, Matthew C, Maddren, Morgan, Fang, Ruihua, Heitner, Steven G, Lee, Brian T, Barber, Galt P, Harte, Rachel A, Diekhans, Mark, Long, Jeffrey C, Wilder, Steven P, Zweig, Ann S, Karolchik, Donna, Kuhn, Robert M, Haussler, David, Kent, W James
Published in Nucleic acids research (01.01.2013)
Published in Nucleic acids research (01.01.2013)
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Journal Article
The UCSC Genome Browser database: extensions and updates 2013
Meyer, Laurence R, Zweig, Ann S, Hinrichs, Angie S, Karolchik, Donna, Kuhn, Robert M, Wong, Matthew, Sloan, Cricket A, Rosenbloom, Kate R, Roe, Greg, Rhead, Brooke, Raney, Brian J, Pohl, Andy, Malladi, Venkat S, Li, Chin H, Lee, Brian T, Learned, Katrina, Kirkup, Vanessa, Hsu, Fan, Heitner, Steve, Harte, Rachel A, Haeussler, Maximilian, Guruvadoo, Luvina, Goldman, Mary, Giardine, Belinda M, Fujita, Pauline A, Dreszer, Timothy R, Diekhans, Mark, Cline, Melissa S, Clawson, Hiram, Barber, Galt P, Haussler, David, Kent, W James
Published in Nucleic acids research (01.01.2013)
Published in Nucleic acids research (01.01.2013)
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Journal Article
A distal enhancer and an ultraconserved exon are derived from a novel retroposon
Ahituv, Nadav, King, Bryan, Siepel, Adam, James Kent, W, Lowe, Craig B, Haussler, David, Bejerano, Gill, Rubin, Edward M, Salama, Sofie R
Published in Nature (04.05.2006)
Published in Nature (04.05.2006)
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Journal Article
The UCSC Genome Browser
Karolchik, Donna, Hinrichs, Angie S, Kent, W James
Published in Current protocols in bioinformatics (01.12.2012)
Published in Current protocols in bioinformatics (01.12.2012)
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Journal Article
The Human Epigenome Browser at Washington University
Zhou, Xin, Maricque, Brett, Xie, Mingchao, Li, Daofeng, Sundaram, Vasavi, Martin, Eric A, Koebbe, Brian C, Nielsen, Cydney, Hirst, Martin, Farnham, Peggy, Kuhn, Robert M, Zhu, Jingchun, Smirnov, Ivan, Kent, W James, Haussler, David, Madden, Pamela A F, Costello, Joseph F, Wang, Ting
Published in Nature methods (01.12.2011)
Published in Nature methods (01.12.2011)
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Journal Article
The human genome browser at UCSC
Kent, W James, Sugnet, Charles W, Furey, Terrence S, Roskin, Krishna M, Pringle, Tom H, Zahler, Alan M, Haussler, David
Published in Genome research (01.06.2002)
Published in Genome research (01.06.2002)
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