Insights on Evolution of Virulence and Resistance from the Complete Genome Analysis of an Early Methicillin-Resistant Staphylococcus aureus Strain and a Biofilm-Producing Methicillin-Resistant Staphylococcus epidermidis Strain
GILL, Steven R, FOUTS, Derrick E, DODSON, Robert J, DAUGHERTY, Sean C, MADUPU, Ramana, ANGIUOLI, Samuel V, DURKIN, A. Scott, HAFT, Daniel H, VAMATHEVAN, Jessica, KHOURI, Hoda, UTTERBACK, Terry, LEE, Chris, ARCHER, Gordon L, DIMITROV, George, LINGXIA JIANG, HAIYING QIN, JAN WEIDMAN, TRAN, Kevin, KANG, Kathy, HANCE, Ioana R, NELSON, Karen E, FRASER, Claire M, MONGODIN, Emmanuel F, DEBOY, Robert T, RAVEL, Jacques, PAULSEN, Ian T, KOLONAY, James F, BRINKAC, Lauren, BEANAN, Mauren
Published in Journal of Bacteriology (01.04.2005)
Published in Journal of Bacteriology (01.04.2005)
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Journal Article
The Psychrophilic Lifestyle as Revealed by the Genome Sequence of Colwellia psychrerythraea 34H through Genomic and Proteomic Analyses
Methé, Barbara A., Nelson, Karen E., Deming, Jody W., Momen, Bahram, Melamud, Eugene, Zhang, Xijun, Moult, John, Madupu, Ramana, Nelson, William C., Dodson, Robert J., Brinkac, Lauren M., Daugherty, Sean C., Durkin, Anthony S., DeBoy, Robert T., Kolonay, James F., Sullivan, Steven A., Zhou, Liwei, Davidsen, Tanja M., Wu, Martin, Huston, Adrienne L., Lewis, Matthew, Weaver, Bruce, Weidman, Janice F., Khouri, Hoda, Utterback, Terry R., Feldblyum, Tamara V., Fraser, Claire M.
Published in Proceedings of the National Academy of Sciences - PNAS (02.08.2005)
Published in Proceedings of the National Academy of Sciences - PNAS (02.08.2005)
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Complete Genome Sequence of the Oral Pathogenic Bacterium Porphyromonas gingivalis Strain W83
Nelson, Karen E, Fleischmann, Robert D, DeBoy, Robert T, Paulsen, Ian T, Fouts, Derrick E, Eisen, Jonathan A, Daugherty, Sean C, Dodson, Robert J, Durkin, A Scott, Gwinn, Michelle, Haft, Daniel H, Kolonay, James F, Nelson, William C, Mason, Tanya, Tallon, Luke, Gray, Jessica, Granger, David, Tettelin, Hervé, Dong, Hong, Galvin, Jamie L, Duncan, Margaret J, Dewhirst, Floyd E, Fraser, Claire M
Published in Journal of Bacteriology (01.09.2003)
Published in Journal of Bacteriology (01.09.2003)
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Genetic Analysis of a High-Level Vancomycin-Resistant Isolate of Staphylococcus aureus
Weigel, Linda M., Clewell, Don B., Gill, Steven R., Clark, Nancye C., McDougal, Linda K., Flannagan, Susan E., Kolonay, James F., Shetty, Jyoti, Killgore, George E., Tenover, Fred C.
Published in Science (American Association for the Advancement of Science) (28.11.2003)
Published in Science (American Association for the Advancement of Science) (28.11.2003)
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Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements
Wu, Martin, Sun, Ling V, Vamathevan, Jessica, Riegler, Markus, Deboy, Robert, Brownlie, Jeremy C, McGraw, Elizabeth A, Martin, William, Esser, Christian, Ahmadinejad, Nahal, Wiegand, Christian, Madupu, Ramana, Beanan, Maureen J, Brinkac, Lauren M, Daugherty, Sean C, Durkin, A Scott, Kolonay, James F, Nelson, William C, Mohamoud, Yasmin, Lee, Perris, Berry, Kristi, Young, M Brook, Utterback, Teresa, Weidman, Janice, Nierman, William C, Paulsen, Ian T, Nelson, Karen E, Tettelin, Hervé, O'Neill, Scott L, Eisen, Jonathan A
Published in PLoS biology (01.03.2004)
Published in PLoS biology (01.03.2004)
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Journal Article
complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000
Buell, C. Robin, Joardar, Vinita, Lindeberg, Magdalen, Selengut, Jeremy, Paulsen, Ian T, Gwinn, Michelle L, Dodson, Robert J, Deboy, Robert T, Durkin, A. Scott, Kolonay, James F, Madupu, Ramana, Daugherty, Sean, Brinkac, Lauren, Beanan, Maureen J, Haft, Daniel H, Nelson, William C, Davidsen, Tanja, Zafar, Nikhat, Zhou, Liwei, Liu, Jia, Yuan, Qiaoping, Khouri, Hoda, Fedorova, Nadia, Tran, Bao, Russell, Daniel, Berry, Kristi, Utterback, Teresa, Van Aken, Susan E, Feldblyum, Tamara V, D'Ascenzo, Mark, Deng, Wen-Ling, Ramos, Adela R, Alfano, James R, Cartinhour, Samuel, Chatterjee, Arun K, Delaney, Terrence P, Lazarowitz, Sondra G, Martin, Gregory B, Schneider, David J, Tang, Xiaoyan, Bender, Carol L, White, Owen, Fraser, Claire M, Collmer, Alan
Published in Proceedings of the National Academy of Sciences - PNAS (02.09.2003)
Published in Proceedings of the National Academy of Sciences - PNAS (02.09.2003)
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Journal Article
The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough
Heidelberg, John F, Seshadri, Rekha, Haveman, Shelley A, Hemme, Christopher L, Paulsen, Ian T, Kolonay, James F, Eisen, Jonathan A, Ward, Naomi, Methe, Barbara, Brinkac, Lauren M, Daugherty, Sean C, Deboy, Robert T, Dodson, Robert J, Durkin, A Scott, Madupu, Ramana, Nelson, William C, Sullivan, Steven A, Fouts, Derrick, Haft, Daniel H, Selengut, Jeremy, Peterson, Jeremy D, Davidsen, Tanja M, Zafar, Nikhat, Zhou, Liwei, Radune, Diana, Dimitrov, George, Hance, Mark, Tran, Kevin, Khouri, Hoda, Gill, John, Utterback, Terry R, Feldblyum, Tamara V, Wall, Judy D, Voordouw, Gerrit, Fraser, Claire M
Published in Nature biotechnology (01.05.2004)
Published in Nature biotechnology (01.05.2004)
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Journal Article
The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria
Read, Timothy D, Peterson, Scott N, Tourasse, Nicolas, Baillie, Les W, Paulsen, Ian T, Nelson, Karen E, Tettelin, Hervé, Fouts, Derrick E, Eisen, Jonathan A, Gill, Steven R, Holtzapple, Erik K, Økstad, Ole Andreas, Helgason, Erlendur, Rilstone, Jennifer, Wu, Martin, Kolonay, James F, Beanan, Maureen J, Dodson, Robert J, Brinkac, Lauren M, Gwinn, Michelle, DeBoy, Robert T, Madpu, Ramana, Daugherty, Sean C, Durkin, A. Scott, Haft, Daniel H, Nelson, William C, Peterson, Jeremy D, Pop, Mihai, Khouri, Hoda M, Radune, Diana, Benton, Jonathan L, Mahamoud, Yasmin, Jiang, Lingxia, Hance, Ioana R, Weidman, Janice F, Berry, Kristi J, Plaut, Roger D, Wolf, Alex M, Watkins, Kisha L, Nierman, William C, Hazen, Alyson, Cline, Robin, Redmond, Caroline, Thwaite, Joanne E, White, Owen, Salzberg, Steven L, Thomason, Brendan, Friedlander, Arthur M, Koehler, Theresa M, Hanna, Philip C, Kolstø, Anne-Brit, Fraser, Claire M
Published in Nature (London) (01.05.2003)
Published in Nature (London) (01.05.2003)
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Journal Article
Genome Sequence of the PCE-Dechlorinating Bacterium Dehalococcoides ethenogenes
Seshadri, Rekha, Adrian, Lorenz, Fouts, Derrick E, Eisen, Jonathan A, Phillippy, Adam M, Methe, Barbara A, Ward, Naomi L, Nelson, William C, Deboy, Robert T, Khouri, Hoda M, Kolonay, James F, Dodson, Robert J, Daugherty, Sean C, Brinkac, Lauren M, Sullivan, Steven A, Madupu, Ramana, Nelson, Karen E, Kang, Katherine H, Impraim, Marjorie, Tran, Kevin, Robinson, Jeffrey M, Forberger, Heather A, Fraser, Claire M, Zinder, Stephen H, Heidelberg, John F
Published in Science (American Association for the Advancement of Science) (07.01.2005)
Published in Science (American Association for the Advancement of Science) (07.01.2005)
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Journal Article
Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis
Fraser, Claire M, Heidelberg, John F, Paulsen, Ian T, Nelson, Karen E, Gaidos, Eric J, Nelson, William C, Read, Timothy D, Eisen, Jonathan A, Seshadri, Rekha, Ward, Naomi, Methe, Barbara, Clayton, Rebecca A, Meyer, Terry, Tsapin, Alexandre, Scott, James, Beanan, Maureen, Brinkac, Lauren, Daugherty, Sean, DeBoy, Robert T, Dodson, Robert J, Durkin, A. Scott, Haft, Daniel H, Kolonay, James F, Madupu, Ramana, Peterson, Jeremy D, Umayam, Lowell A, White, Owen, Wolf, Alex M, Vamathevan, Jessica, Weidman, Janice, Impraim, Marjorie, Lee, Kathy, Berry, Kristy, Lee, Chris, Mueller, Jacob, Khouri, Hoda, Gill, John, Utterback, Terry R, McDonald, Lisa A, Feldblyum, Tamara V, Smith, Hamilton O, Venter, J. Craig, Nealson, Kenneth H
Published in Nature biotechnology (01.11.2002)
Published in Nature biotechnology (01.11.2002)
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Journal Article
Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species
Nelson, K.E, Fouts, D.E, Mongodin, E.F, Ravel, J, DeBoy, R.T, Kolonay, J.F, Rasko, D.A, Angiuoli, S.V, Gill, S.R, Paulsen, I.T, Wonderling, L.D, Uhlich, G.A, Bayles, D.O, Luchansky, J.B
Published in Nucleic acids research (2004)
Published in Nucleic acids research (2004)
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Structural Flexibility in the Burkholderia mallei Genome
Nierman, William C., DeShazer, David, Kim, H. Stanley, Tettelin, Herve, Nelson, Karen E., Feldblyum, Tamara, Ulrich, Ricky L., Ronning, Catherine M., Brinkac, Lauren M., Daugherty, Sean C., Davidsen, Tanja D., Deboy, Robert T., Dimitrov, George, Dodson, Robert J., Durkin, A. Scott, Gwinn, Michelle L., Haft, Daniel H., Khouri, Hoda, Kolonay, James F., Madupu, Ramana, Mohammoud, Yasmin, Nelson, William C., Radune, Diana, Romero, Claudia M., Sarria, Saul, Selengut, Jeremy, Shamblin, Christine, Sullivan, Steven A., White, Owen, Yu, Yan, Zafar, Nikhat, Zhou, Liwei, Fraser, Claire M., Greenberg, E. Peter
Published in Proceedings of the National Academy of Sciences - PNAS (28.09.2004)
Published in Proceedings of the National Academy of Sciences - PNAS (28.09.2004)
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Journal Article
Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901
Wu, Martin, Ren, Qinghu, Durkin, A Scott, Daugherty, Sean C, Brinkac, Lauren M, Dodson, Robert J, Madupu, Ramana, Sullivan, Steven A, Kolonay, James F, Haft, Daniel H, Nelson, William C, Tallon, Luke J, Jones, Kristine M, Ulrich, Luke E, Gonzalez, Juan M, Zhulin, Igor B, Robb, Frank T, Eisen, Jonathan A
Published in PLoS genetics (01.11.2005)
Published in PLoS genetics (01.11.2005)
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Journal Article
Complete Genome Sequence and Comparative Genomic Analysis of an Emerging Human Pathogen, Serotype V Streptococcus agalactiae
Tettelin, Hervé, Masignani, Vega, Cieslewicz, Michael J., Eisen, Jonathan A., Peterson, Scott, Wessels, Michael R., Paulsen, Ian T., Nelson, Karen E., Margarit, Immaculada, Read, Timothy D., Madoff, Lawrence C., Wolf, Alex M., Beanan, Maureen J., Brinkac, Lauren M., Daugherty, Sean C., DeBoy, Robert T., Durkin, A. Scott, Kolonay, James F., Madupu, Ramana, Lewis, Matthew R., Radune, Diana, Fedorova, Nadezhda B., Scanlan, David, Khouri, Hoda, Mulligan, Stephanie, Carty, Heather A., Cline, Robin T., Van Aken, Susan E., Gill, John, Scarselli, Maria, Mora, Marirosa, Iacobini, Emilia T., Brettoni, Cecilia, Galli, Giuliano, Mariani, Massimo, Vegni, Filippo, Maione, Domenico, Rinaudo, Daniela, Rappuoli, Rino, Telford, John L., Kasper, Dennis L., Grandi, Guido, Fraser, Claire M.
Published in Proceedings of the National Academy of Sciences - PNAS (17.09.2002)
Published in Proceedings of the National Academy of Sciences - PNAS (17.09.2002)
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Journal Article
Correction: Life in Hot Carbon Monoxide: The Complete Genome Sequence of Carboxydothermus hydrogenoformans Z-2901
Wu, Martin, Ren, Qinghu, Durkin, A. Scott, Daugherty, Sean C, Brinkac, Lauren M, Dodson, Robert J, Madupu, Ramana, Sullivan, Steven A, Kolonay, James F, Haft, Daniel H, Nelson, William C, Tallon, Luke J, Jones, Kristine M, Ulrich, Luke E, Gonzalez, Juan M, Zhulin, Igor B, Robb, Frank T, Eisen, Jonathan A
Published in PLoS genetics (01.04.2006)
Published in PLoS genetics (01.04.2006)
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Journal Article
Complete Genome Sequence of a Virulent Isolate of Streptococcus pneumoniae
Tettelin, Hervé, Nelson, Karen E., Paulsen, Ian T., Eisen, Jonathan A., Read, Timothy D., Peterson, Scott, Heidelberg, John, DeBoy, Robert T., Haft, Daniel H., Dodson, Robert J., Durkin, A. Scott, Gwinn, Michelle, Kolonay, James F., Nelson, William C., Peterson, Jeremy D., Umayam, Lowell A., White, Owen, Salzberg, Steven L., Lewis, Matthew R., Radune, Diana, Holtzapple, Erik, Khouri, Hoda, Wolf, Alex M., Utterback, Terry R., Hansen, Cheryl L., McDonald, Lisa A., Feldblyum, Tamara V., Angiuoli, Samuel, Dickinson, Tanja, Hickey, Erin K., Holt, Ingeborg E., Loftus, Brendan J., Yang, Fan, Smith, Hamilton O., Venter, J. Craig, Dougherty, Brian A., Morrison, Donald A., Hollingshead, Susan K., Fraser, Claire M.
Published in Science (American Association for the Advancement of Science) (20.07.2001)
Published in Science (American Association for the Advancement of Science) (20.07.2001)
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Journal Article
The Brucella suis Genome Reveals Fundamental Similarities between Animal and Plant Pathogens and Symbionts
Paulsen, Ian T., Seshadri, Rekha, Nelson, Karen E., Eisen, Jonathan A., Heidelberg, John F., Read, Timothy D., Dodson, Robert J., Umayam, Lowell, Brinkac, Lauren M., Beanan, Maureen J., Daugherty, Sean C., Deboy, Robert T., Durkin, A. Scott, Kolonay, James F., Madupu, Ramana, Nelson, William C., Ayodeji, Bola, Kraul, Margaret, Shetty, Jyoti, Malek, Joel, van Aken, Susan E., Riedmuller, Steven, Tettelin, Herve, Gill, Steven R., White, Owen, Salzberg, Steven L., Hoover, David L., Lindler, Luther E., Halling, Shirley M., Boyle, Stephen M., Fraser, Claire M.
Published in Proceedings of the National Academy of Sciences - PNAS (01.10.2002)
Published in Proceedings of the National Academy of Sciences - PNAS (01.10.2002)
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Journal Article
Complete Genome Sequence of Caulobacter crescentus
Nierman, William C., Feldblyum, Tamara V., Laub, Michael T., Paulsen, Ian T., Nelson, Karen E., Eisen, Jonathan, Heidelberg, John F., Alley, M. R. K., Ohta, Noriko, Maddock, Janine R., Potocka, Isabel, Nelson, William C., Newton, Austin, Stephens, Craig, Phadke, Nikhil D., Ely, Bert, DeBoy, Robert T., Dodson, Robert J., Durkin, A. Scott, Gwinn, Michelle L., Haft, Daniel H., Kolonay, James F., Smit, John, Craven, M. B., Khouri, Hoda, Shetty, Jyoti, Berry, Kristi, Utterback, Teresa, Tran, Kevin, Wolf, Alex, Vamathevan, Jessica, Ermolaeva, Maria, White, Owen, Salzberg, Steven L., Venter, J. Craig, Shapiro, Lucy, Fraser, Claire M.
Published in Proceedings of the National Academy of Sciences - PNAS (27.03.2001)
Published in Proceedings of the National Academy of Sciences - PNAS (27.03.2001)
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Journal Article
Correction: Life in Hot Carbon Monoxide: The Complete Genome Sequence of Carboxydothermus hydrogenoformans Z-2901
Martin Wu, Qinghu Ren, A. Scott Durkin, Sean C Daugherty, Lauren M Brinkac, Robert J Dodson, Ramana Madupu, Steven A Sullivan, James F Kolonay, Daniel H Haft, William C Nelson, Luke J Tallon, Kristine M Jones, Luke E Ulrich, Juan M Gonzalez, Igor B Zhulin, Frank T Robb, Jonathan A Eisen
Published in PLoS genetics (01.04.2006)
Published in PLoS genetics (01.04.2006)
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