Smoking induces DNA methylation changes in Multiple Sclerosis patients with exposure-response relationship
Marabita, Francesco, Almgren, Malin, Sjöholm, Louise K, Kular, Lara, Liu, Yun, James, Tojo, Kiss, Nimrod B, Feinberg, Andrew P, Olsson, Tomas, Kockum, Ingrid, Alfredsson, Lars, Ekström, Tomas J, Jagodic, Maja
Published in Scientific reports (06.11.2017)
Published in Scientific reports (06.11.2017)
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Journal Article
Sex influences eQTL effects of SLE and Sjögren's syndrome-associated genetic polymorphisms
Lindén, Magdalena, Ramírez Sepúlveda, Jorge I, James, Tojo, Thorlacius, Gudny Ella, Brauner, Susanna, Gómez-Cabrero, David, Olsson, Tomas, Kockum, Ingrid, Wahren-Herlenius, Marie
Published in Biology of sex differences (25.10.2017)
Published in Biology of sex differences (25.10.2017)
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Journal Article
Circulating miR-150 in CSF is a novel candidate biomarker for multiple sclerosis
Bergman, Petra, Piket, Eliane, Khademi, Mohsen, James, Tojo, Brundin, Lou, Olsson, Tomas, Piehl, Fredrik, Jagodic, Maja
Published in Neurology : neuroimmunology & neuroinflammation (01.06.2016)
Published in Neurology : neuroimmunology & neuroinflammation (01.06.2016)
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Journal Article
Author Correction: Smoking induces DNA methylation changes in Multiple Sclerosis patients with exposure-response relationship
Marabita, Francesco, Almgren, Malin, Sjöholm, Louise K, Kular, Lara, Liu, Yun, James, Tojo, Kiss, Nimrod B, Feinberg, Andrew P, Olsson, Tomas, Kockum, Ingrid, Alfredsson, Lars, Ekström, Tomas J, Jagodic, Maja
Published in Scientific reports (07.03.2018)
Published in Scientific reports (07.03.2018)
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Journal Article
Delineating functional and molecular impact of ex vivo sample handling in precision medicine
Struyf, Nona, Österroos, Albin, Vesterlund, Mattias, Arnroth, Cornelia, James, Tojo, Sunandar, Stephanie, Mermelekas, Georgios, Bohlin, Anna, Hamberg Levedahl, Kerstin, Bengtzén, Sofia, Jafari, Rozbeh, Orre, Lukas M, Lehtiö, Janne, Lehmann, Sören, Östling, Päivi, Kallioniemi, Olli, Seashore-Ludlow, Brinton, Erkers, Tom
Published in NPJ precision oncology (19.02.2024)
Published in NPJ precision oncology (19.02.2024)
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Journal Article
DNA methylation as a mediator of HLA-DRB1 15:01 and a protective variant in multiple sclerosis
Kular, Lara, Liu, Yun, Ruhrmann, Sabrina, Zheleznyakova, Galina, Marabita, Francesco, Gomez-Cabrero, David, James, Tojo, Ewing, Ewoud, Lindén, Magdalena, Górnikiewicz, Bartosz, Aeinehband, Shahin, Stridh, Pernilla, Link, Jenny, Andlauer, Till F.M, Gasperi, Christiane, Wiendl, Heinz, Zipp, Frauke, Gold, Ralf, Tackenberg, Björn, Weber, Frank, Hemmer, Bernhard, Strauch, Konstantin, Heilmann-Heimbach, Stefanie, Rawal, Rajesh, Schminke, Ulf, Schmidt, Carsten O, Kacprowski, Tim, Franke, Andre, Laudes, Matthias, Dilthey, Alexander T, Celius, Elisabeth Gulowsen, Søndergaard, Helle Bach, Tegnér, Jesper, Harbo, Hanne Flinstad, Oturai, Annette B, Olafsson, Sigurgeir, Eggertsson, Hannes P, Halldorsson, Bjarni V, Hjaltason, Haukur, Olafsson, Elias, Jonsdottir, Ingileif, Stefansson, Kari, Olsson, Tomas, Piehl, Fredrik, Ekström, Tomas J, Kockum, Ingrid, Feinberg, Andrew P, Jagodic, Maja
Published in Nature communications (01.12.2018)
Published in Nature communications (01.12.2018)
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Journal Article
Impact of genetic risk loci for multiple sclerosis on expression of proximal genes in patients
James, Tojo, Lindén, Magdalena, Morikawa, Hiromasa, Fernandes, Sunjay Jude, Ruhrmann, Sabrina, Huss, Mikael, Brandi, Maya, Piehl, Fredrik, Jagodic, Maja, Tegnér, Jesper, Khademi, Mohsen, Olsson, Tomas, Gomez-Cabrero, David, Kockum, Ingrid
Published in Human molecular genetics (01.03.2018)
Published in Human molecular genetics (01.03.2018)
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Journal Article
Small noncoding RNA profiling across cellular and biofluid compartments and their implications for multiple sclerosis immunopathology
Zheleznyakova, Galina Yurevna, Piket, Eliane, Needhamsen, Maria, Hagemann-Jensen, Michael, Ekman, Diana, Han, Yanan, James, Tojo, Khademi, Mohsen, Al Nimer, Faiez, Scicluna, Patrick, Huang, Jesse, Kockum, Ingrid, Faridani, Omid R, Olsson, Tomas, Piehl, Fredrik, Jagodic, Maja
Published in Proceedings of the National Academy of Sciences - PNAS (27.04.2021)
Published in Proceedings of the National Academy of Sciences - PNAS (27.04.2021)
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Journal Article
Data-Driven Molecular Hallmarks of Acute Myeloid Leukemia: Biological, Prognostic and Therapeutic Implications
Erkers, Tom, Marabita, Francesco, Struyf, Nona, Vesterlund, Mattias, James, Tojo, Arnroth, Cornelia, Bohlin, Anna, Bengtzén, Sofia, Österroos, Albin, Stahl, Matthias, Jafari, Rozbeh, Orre, Lukas, Pawitan, Yudi, Seashore-Ludlow, Brinton, Lehtiö, Janne, Lehmann, Sören, Östling, Päivi, Kallioniemi, Olli
Published in BLOOD (15.11.2022)
Published in BLOOD (15.11.2022)
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Journal Article
Conference Proceeding
A genetic-epigenetic interplay at 1q21.1 locus underlies CHD1L-mediated vulnerability to primary progressive multiple sclerosis
Pahlevan Kakhki, Majid, Giordano, Antonino, Starvaggi Cucuzza, Chiara, Venkata S. Badam, Tejaswi, Samudyata, Samudyata, Lemée, Marianne Victoria, Stridh, Pernilla, Gkogka, Asimenia, Shchetynsky, Klementy, Harroud, Adil, Gyllenberg, Alexandra, Liu, Yun, Boddul, Sanjaykumar, James, Tojo, Sorosina, Melissa, Filippi, Massimo, Esposito, Federica, Wermeling, Fredrik, Gustafsson, Mika, Casaccia, Patrizia, Hillert, Jan, Olsson, Tomas, Kockum, Ingrid, Sellgren, Carl M., Golzio, Christelle, Kular, Lara, Jagodic, Maja
Published in Nature communications (30.07.2024)
Published in Nature communications (30.07.2024)
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Journal Article
Viral antigens elicit augmented immune responses in primary Sjögren’s syndrome
Björk, Albin, Thorlacius, Gudny Ella, Mofors, Johannes, Richardsdotter Andersson, Elina, Ivanchenko, Margarita, Tingström, Joanna, James, Tojo, Brokstad, Karl A, Cox, Rebecca J, Jonsson, Roland, Kvarnström, Marika, Wahren-Herlenius, Marie
Published in Rheumatology (Oxford, England) (01.07.2020)
Published in Rheumatology (Oxford, England) (01.07.2020)
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Journal Article
C-type lectin receptors Mcl and Mincle control development of multiple sclerosis-like neuroinflammation
N'diaye, Marie, Brauner, Susanna, Flytzani, Sevasti, Kular, Lara, Warnecke, Andreas, Adzemovic, Milena Z, Piket, Eliane, Min, Jin-Hong, Edwards, Will, Mela, Filia, Choi, Hoi Ying, Magg, Vera, James, Tojo, Linden, Magdalena, Reichardt, Holger M, Daws, Michael R, van Horssen, Jack, Kockum, Ingrid, Harris, Robert A, Olsson, Tomas, Guerreiro-Cacais, Andre O, Jagodic, Maja
Published in The Journal of clinical investigation (01.02.2020)
Published in The Journal of clinical investigation (01.02.2020)
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Journal Article
Next-generation sequencing identifies microRNAs that associate with pathogenic autoimmune neuroinflammation in rats
Bergman, Petra, James, Tojo, Kular, Lara, Ruhrmann, Sabrina, Kramarova, Tatiana, Kvist, Anders, Supic, Gordana, Gillett, Alan, Pivarcsi, Andor, Jagodic, Maja
Published in The Journal of immunology (1950) (15.04.2013)
Published in The Journal of immunology (1950) (15.04.2013)
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Journal Article
High-Throughput Functional Ex-Vivo Drug Testing and Multi-Omics Profiling in Patients with Acute Myeloid Leukemia
Erkers, Tom, Seashore-Ludlow, Brinton, Struyf, Nona, Marabita, Francesco, James, Tojo, Malani, Disha, Vesterlund, Mattias, Stalhl, Matthias, Pawitan, Yudi, Lehmann, Sören, Östling, Päivi, Lehtiö, Janne, Kallioniemi, Olli
Published in BLOOD (13.11.2019)
Published in BLOOD (13.11.2019)
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Journal Article
Conference Proceeding
TGFβ regulates persistent neuroinflammation by controlling Th1 polarization and ROS production via monocyte-derived dendritic cells
Parsa, Roham, Lund, Harald, Tosevski, Ivana, Zhang, Xing-Mei, Malipiero, Ursula, Beckervordersandforth, Jan, Merkler, Doron, Prinz, Marco, Gyllenberg, Alexandra, James, Tojo, Warnecke, Andreas, Hillert, Jan, Alfredsson, Lars, Kockum, Ingrid, Olsson, Tomas, Fontana, Adriano, Suter, Tobias, Harris, Robert A.
Published in Glia (01.11.2016)
Published in Glia (01.11.2016)
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Journal Article
Abstract 6612: Data-driven hallmarks of cancer as a new paradigm for precision medicine: multi-omics and functional profiling in acute myeloid leukemia
Erkers, Tom, Struyf, Nona, James, Tojo, Marabita, Francesco, Vesterlund, Mattias, Vu, Nghia, Arnroth, Cornelia, Österroos, Albin, Bohlin, Anna, Bengtzén, Sofia, Stahl, Matthias, Jafari, Rozbeh, Orre, Lukas, Pawitan, Yudi, Seashore-Ludlow, Brinton, Lehtiö, Janne, Lehmann, Sören, Östling, Päivi, Kallioniemi, Olli
Published in Cancer research (Chicago, Ill.) (04.04.2023)
Published in Cancer research (Chicago, Ill.) (04.04.2023)
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Journal Article
TGF[beta] regulates persistent neuroinflammation by controlling Th1 polarization and ROS production via monocyte-derived dendritic cells
Parsa, Roham, Lund, Harald, Tosevski, Ivana, Zhang, Xing-Mei, Malipiero, Ursula, Beckervordersandforth, Jan, Merkler, Doron, Prinz, Marco, Gyllenberg, Alexandra, James, Tojo, Warnecke, Andreas, Hillert, Jan, Alfredsson, Lars, Kockum, Ingrid, Olsson, Tomas, Fontana, Adriano, Suter, Tobias, Harris, Robert A
Published in Glia (01.11.2016)
Published in Glia (01.11.2016)
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Journal Article
Multiomics and digital monitoring during lifestyle changes reveal independent dimensions of human biology and health
Marabita, Francesco, James, Tojo, Karhu, Anu, Virtanen, Heidi, Kettunen, Kaisa, Stenlund, Hans, Boulund, Fredrik, Hellström, Cecilia, Neiman, Maja, Mills, Robert, Perheentupa, Teemu, Laivuori, Hannele, Helkkula, Pyry, Byrne, Myles, Jokinen, Ilkka, Honko, Harri, Kallonen, Antti, Ermes, Miikka, Similä, Heidi, Lindholm, Mikko, Widén, Elisabeth, Ripatti, Samuli, Perälä-Heape, Maritta, Engstrand, Lars, Nilsson, Peter, Moritz, Thomas, Miettinen, Timo, Sallinen, Riitta, Kallioniemi, Olli
Published in Cell systems (16.03.2022)
Published in Cell systems (16.03.2022)
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Journal Article
Assessing the consistency of public human tissue RNA-seq data sets
Danielsson, Frida, James, Tojo, Gomez-Cabrero, David, Huss, Mikael
Published in Briefings in bioinformatics (01.11.2015)
Published in Briefings in bioinformatics (01.11.2015)
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Journal Article
Article Multiomics and digital monitoring during lifestyle changes reveal independent dimensions of human biology and health
Marabita, Francesco, James, Tojo, Karhu, Anu, Virtanen, Heidi, Kettunen, Kaisa, Stenlund, Hans, Boulund, Fredrik, Hellström, Cecilia, Neiman, Maja, Mills, Robert, Perheentupa, Teemu, Laivuori, Hannele, Helkkula, Pyry, Byrne, Myles, Jokinen, Ilkka, Honko, Harri, Kallonen, Antti, Ermes, Miikka, Simila, Heidi, Lindholm, Mikko, Widen, Elisabeth, Ripatti, Samuli, Perala-Heape, Maritta, Engstrand, Lars, Nilsson, Peter, Moritz, Thomas, Miettinen, Timo, Sallinen, Riitta, Kallioniemi, Olli
Published in Cell systems (2022)
Published in Cell systems (2022)
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Journal Article