A metagenomic investigation of the faecal RNA virome structure of asymptomatic chickens obtained from a commercial farm in Durban, KwaZulu-Natal province, South Africa
Nwokorogu, Vivian C, Pillai, Santhosh, San, James E, Pillay, Charlene, Nyaga, Martin M, Sabiu, Saheed
Published in BMC genomics (24.06.2024)
Published in BMC genomics (24.06.2024)
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Vaginal microbial shifts are unaffected by oral pre-exposure prophylaxis in South African women
Mazibuko-Motau, Noluthando, Sobia, Parveen, Xu, Jiawu, Elsherbini, Joseph Ahmed, San, James E., Lewis, Lara, Mtshali, Andile, Mzobe, Gugulethu, Ntuli, Lungelo, Abdool Karim, Salim S., Mansoor, Leila E., Abdool Karim, Quarraisha, Kwon, Douglas S., Archary, Derseree, Ngcapu, Sinaye
Published in Scientific reports (28.09.2022)
Published in Scientific reports (28.09.2022)
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Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa
Viana, Raquel, Moyo, Sikhulile, Amoako, Daniel G., Tegally, Houriiyah, Scheepers, Cathrine, Althaus, Christian L., Anyaneji, Ugochukwu J., Bester, Phillip A., Boni, Maciej F., Chand, Mohammed, Choga, Wonderful T., Colquhoun, Rachel, Davids, Michaela, Deforche, Koen, Doolabh, Deelan, du Plessis, Louis, Engelbrecht, Susan, Everatt, Josie, Giandhari, Jennifer, Giovanetti, Marta, Hardie, Diana, Hill, Verity, Hsiao, Nei-Yuan, Iranzadeh, Arash, Ismail, Arshad, Joseph, Charity, Joseph, Rageema, Koopile, Legodile, Kosakovsky Pond, Sergei L., Kraemer, Moritz U. G., Kuate-Lere, Lesego, Laguda-Akingba, Oluwakemi, Lesetedi-Mafoko, Onalethatha, Lessells, Richard J., Lockman, Shahin, Lucaci, Alexander G., Maharaj, Arisha, Mahlangu, Boitshoko, Maponga, Tongai, Mahlakwane, Kamela, Makatini, Zinhle, Marais, Gert, Maruapula, Dorcas, Masupu, Kereng, Matshaba, Mogomotsi, Mayaphi, Simnikiwe, Mbhele, Nokuzola, Mbulawa, Mpaphi B., Mendes, Adriano, Mlisana, Koleka, Mnguni, Anele, Mohale, Thabo, Moir, Monika, Moruisi, Kgomotso, Mosepele, Mosepele, Motsatsi, Gerald, Motswaledi, Modisa S., Mphoyakgosi, Thongbotho, Msomi, Nokukhanya, Mwangi, Peter N., Naidoo, Yeshnee, Ntuli, Noxolo, Nyaga, Martin, Olubayo, Lucier, Pillay, Sureshnee, Radibe, Botshelo, Ramphal, Yajna, Ramphal, Upasana, San, James E., Scott, Lesley, Shapiro, Roger, Singh, Lavanya, Smith-Lawrence, Pamela, Stevens, Wendy, Strydom, Amy, Subramoney, Kathleen, Tebeila, Naume, Tshiabuila, Derek, Tsui, Joseph, van Wyk, Stephanie, Weaver, Steven, Wibmer, Constantinos K., Wilkinson, Eduan, Wolter, Nicole, Zarebski, Alexander E., Zuze, Boitumelo, Goedhals, Dominique, Preiser, Wolfgang, Treurnicht, Florette, Venter, Marietje, Williamson, Carolyn, Pybus, Oliver G., Bhiman, Jinal, Glass, Allison, Martin, Darren P., Rambaut, Andrew, Gaseitsiwe, Simani, von Gottberg, Anne, de Oliveira, Tulio
Published in Nature (London) (24.03.2022)
Published in Nature (London) (24.03.2022)
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Emergence of SARS-CoV-2 Omicron lineages BA.4 and BA.5 in South Africa
Tegally, Houriiyah, Moir, Monika, Everatt, Josie, Giovanetti, Marta, Scheepers, Cathrine, Wilkinson, Eduan, Subramoney, Kathleen, Makatini, Zinhle, Moyo, Sikhulile, Amoako, Daniel G., Baxter, Cheryl, Althaus, Christian L., Anyaneji, Ugochukwu J., Kekana, Dikeledi, Viana, Raquel, Giandhari, Jennifer, Lessells, Richard J., Maponga, Tongai, Maruapula, Dorcas, Choga, Wonderful, Matshaba, Mogomotsi, Mbulawa, Mpaphi B., Msomi, Nokukhanya, Naidoo, Yeshnee, Pillay, Sureshnee, Sanko, Tomasz Janusz, San, James E., Scott, Lesley, Singh, Lavanya, Magini, Nonkululeko A., Smith-Lawrence, Pamela, Stevens, Wendy, Dor, Graeme, Tshiabuila, Derek, Wolter, Nicole, Preiser, Wolfgang, Treurnicht, Florette K., Venter, Marietjie, Chiloane, Georginah, McIntyre, Caitlyn, O’Toole, Aine, Ruis, Christopher, Peacock, Thomas P., Roemer, Cornelius, Kosakovsky Pond, Sergei L., Williamson, Carolyn, Pybus, Oliver G., Bhiman, Jinal N., Glass, Allison, Martin, Darren P., Jackson, Ben, Rambaut, Andrew, Laguda-Akingba, Oluwakemi, Gaseitsiwe, Simani, von Gottberg, Anne, de Oliveira, Tulio
Published in Nature medicine (01.09.2022)
Published in Nature medicine (01.09.2022)
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Global disparities in SARS-CoV-2 genomic surveillance
Brito, Anderson F., Semenova, Elizaveta, Dudas, Gytis, Hassler, Gabriel W., Kalinich, Chaney C., Kraemer, Moritz U. G., Ho, Joses, Tegally, Houriiyah, Githinji, George, Agoti, Charles N., Matkin, Lucy E., Whittaker, Charles, Howden, Benjamin P., Sintchenko, Vitali, Zuckerman, Neta S., Mor, Orna, Blankenship, Heather M., de Oliveira, Tulio, Lin, Raymond T. P., Siqueira, Marilda Mendonça, Resende, Paola Cristina, Vasconcelos, Ana Tereza R., Spilki, Fernando R., Aguiar, Renato Santana, Alexiev, Ivailo, Ivanov, Ivan N., Philipova, Ivva, Carrington, Christine V. F., Sahadeo, Nikita S. D., Branda, Ben, Gurry, Céline, Maurer-Stroh, Sebastian, Naidoo, Dhamari, von Eije, Karin J., Perkins, Mark D., van Kerkhove, Maria, Hill, Sarah C., Sabino, Ester C., Pybus, Oliver G., Dye, Christopher, Bhatt, Samir, Flaxman, Seth, Suchard, Marc A., Grubaugh, Nathan D., Baele, Guy, Faria, Nuno R.
Published in Nature communications (16.11.2022)
Published in Nature communications (16.11.2022)
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Subregional origins of emerging SARS-CoV-2 variants during the second pandemic wave in Côte d’Ivoire
Anoh, Etilé A., Wayoro, Oby, Monemo, Pacôme, Belarbi, Essia, Sachse, Andreas, Wilkinson, Eduan, San, James E., Leendertz, Fabian H., Diané, Bamourou, Calvignac-Spencer, Sébastien, Akoua-Koffi, Chantal, Schubert, Grit
Published in Virus genes (01.06.2023)
Published in Virus genes (01.06.2023)
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Transmission dynamics of SARS-CoV-2 within-host diversity in two major hospital outbreaks in South Africa
San, James E, Ngcapu, Sinaye, Kanzi, Aquillah M, Tegally, Houriiyah, Fonseca, Vagner, Giandhari, Jennifer, Wilkinson, Eduan, Nelson, Chase W, Smidt, Werner, Kiran, Anmol M, Chimukangara, Benjamin, Pillay, Sureshnee, Singh, Lavanya, Fish, Maryam, Gazy, Inbal, Martin, Darren P, Khanyile, Khulekani, Lessells, Richard, de Oliveira, Tulio
Published in Virus evolution (01.01.2021)
Published in Virus evolution (01.01.2021)
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Molecular Epidemiology and Diversity of SARS-CoV-2 in Ethiopia, 2020-2022
Sisay, Abay, Tshiabuila, Derek, van Wyk, Stephanie, Tesfaye, Abraham, Mboowa, Gerald, Oyola, Samuel O, Tesema, Sofonias Kifle, Baxter, Cheryl, Martin, Darren, Lessells, Richard, Tegally, Houriiyah, Moir, Monika, Giandhari, Jennifer, Pillay, Sureshnee, Singh, Lavanya, Ramphal, Yajna, Maharaj, Arisha, Pillay, Yusasha, Maharaj, Akhil, Naidoo, Yeshnee, Ramphal, Upasana, Chabuka, Lucious, Wilkinson, Eduan, de Oliveira, Tulio, Desta, Adey Feleke, San, James E
Published in Genes (13.03.2023)
Published in Genes (13.03.2023)
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Leveraging implementation science to improve implementation outcomes in precision medicine
Mogaka, John J O, James, San E, Chimbari, Moses J
Published in American journal of translational research (01.01.2020)
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Published in American journal of translational research (01.01.2020)
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Phylogenetic evidence of extensive spatial mixing of diverse HIV-1 group M lineages within Cameroon but not between its neighbours
Godwe, Célestin, Goni, Oumarou H, San, James E, Sonela, Nelson, Tchakoute, Mérimé, Nanfack, Aubin, Koro, Francioli K, Butel, Christelle, Vidal, Nicole, Duerr, Ralf, Martin, Darren P, de Oliveira, Tulio, Peeters, Martine, Altfeld, Marcus, Ayouba, Ahidjo, Ndung'u, Thumbi, Tongo, Marcel
Published in Virus evolution (09.10.2024)
Published in Virus evolution (09.10.2024)
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SARS-CoV-2 Africa dashboard for real-time COVID-19 information
Xavier, Joicymara S., Moir, Monika, Tegally, Houriiyah, Sitharam, Nikita, Abdool Karim, Wasim, San, James E., Linhares, Joana, Wilkinson, Eduan, Ascher, David B., Baxter, Cheryl, Pires, Douglas E. V., de Oliveira, Tulio
Published in Nature microbiology (01.01.2023)
Published in Nature microbiology (01.01.2023)
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Targeted Sanger sequencing to recover key mutations in SARS-CoV-2 variant genome assemblies produced by next-generation sequencing
Singh, Lavanya, San, James E, Tegally, Houriiyah, Brzoska, Pius M, Anyaneji, Ugochukwu J, Wilkinson, Eduan, Clark, Lindsay, Giandhari, Jennifer, Pillay, Sureshnee, Lessells, Richard J, Martin, Darren Patrick, Furtado, Manohar, Kiran, Anmol M, de Oliveira, Tulio
Published in Microbial genomics (01.03.2022)
Published in Microbial genomics (01.03.2022)
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An Oxford Nanopore Technology-Based Hepatitis B Virus Sequencing Protocol Suitable For Genomic Surveillance Within Clinical Diagnostic Settings
Tshiabuila, Derek, Choga, Wonderful, James, San E, Maponga, Tongai, Preiser, Wolfgang, van Zyl, Gert, Moir, Monika, van Wyk, Stephanie, Giandhari, Jennifer, Pillay, Sureshnee, Anyaneji, Ugochukwu J, Lessells, Richard J, Naidoo, Yeshnee, Sanko, Tomasz Janusz, Wilkinson, Eduan, Tegally, Houriiyah, Baxter, Cheryl, Martin, Darren P, de Oliveira, Tulio
Published in medRxiv : the preprint server for health sciences (25.01.2024)
Published in medRxiv : the preprint server for health sciences (25.01.2024)
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Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa
Viana, Raquel, Moyo, Sikhulile, Amoako, Daniel G., Tegally, Houriiyah, Scheepers, Cathrine, Althaus, Christian L., Anyaneji, Ugochukwu J., Bester, Phillip A., Boni, Maciej F., Chand, Mohammed, Choga, Wonderful T., Colquhoun, Rachel, Davids, Michaela, Deforche, Koen, Doolabh, Deelan, du Plessis, Louis, Engelbrecht, Susan, Everatt, Josie, Giandhari, Jennifer, Giovanetti, Marta, Hardie, Diana, Hill, Verity, Hsiao, Nei-Yuan, Iranzadeh, Arash, Ismail, Arshad, Joseph, Charity, Joseph, Rageema, Koopile, Legodile, Kosakovsky Pond, Sergei L., Kraemer, Moritz U. G., Kuate-Lere, Lesego, Laguda-Akingba, Oluwakemi, Lesetedi-Mafoko, Onalethatha, Lessells, Richard J., Lockman, Shahin, Lucaci, Alexander G., Maharaj, Arisha, Mahlangu, Boitshoko, Maponga, Tongai, Mahlakwane, Kamela, Makatini, Zinhle, Marais, Gert, Maruapula, Dorcas, Masupu, Kereng, Matshaba, Mogomotsi, Mayaphi, Simnikiwe, Mbhele, Nokuzola, Mbulawa, Mpaphi B., Mendes, Adriano, Mlisana, Koleka, Mnguni, Anele, Mohale, Thabo, Moir, Monika, Moruisi, Kgomotso, Mosepele, Mosepele, Motsatsi, Gerald, Motswaledi, Modisa S., Mphoyakgosi, Thongbotho, Msomi, Nokukhanya, Mwangi, Peter N., Naidoo, Yeshnee, Ntuli, Noxolo, Nyaga, Martin, Olubayo, Lucier, Pillay, Sureshnee, Radibe, Botshelo, Ramphal, Yajna, Ramphal, Upasana, San, James E., Scott, Lesley, Shapiro, Roger, Singh, Lavanya, Smith-Lawrence, Pamela, Stevens, Wendy, Strydom, Amy, Subramoney, Kathleen, Tebeila, Naume, Tshiabuila, Derek, Tsui, Joseph, van Wyk, Stephanie, Weaver, Steven, Wibmer, Constantinos K., Wilkinson, Eduan, Wolter, Nicole, Zarebski, Alexander E., Zuze, Boitumelo, Goedhals, Dominique, Preiser, Wolfgang, Treurnicht, Florette, Venter, Marietje, Williamson, Carolyn, Pybus, Oliver G., Bhiman, Jinal, Glass, Allison, Martin, Darren P., Rambaut, Andrew, Gaseitsiwe, Simani, von Gottberg, Anne, de Oliveira, Tulio
Published in Nature (London) (07.01.2022)
Published in Nature (London) (07.01.2022)
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An emerging clade of Chikungunya West African genotype discovered in real-time during 2023 outbreak in Senegal
Padane, Abdou, Tegally, Houriiyah, Ramphal, Yajna, Seyni, Ndiaye, Sarr, Mariéma, Diop, Mame Matar, Diedhiou, Cyrille Kouligueul, Mboup, Aminata, Diouf, Ndèye Dieyna, Souaré, Abdoulaye, Diagne, Ndéye Diabou, Aza-Gnandji, Marilyne, Dabo, Ndèye Astou, Dia, Yacine Amet, Diaw, Ndeye Aminata, Leye, Nafissatou, Diaw, Papa Alassane, Ahouidi, Ambroise, Cissé, Badara, Diallo, Abdoulaye Samba, Diop, Ousmane, Diallo, Abdou Aziz, Ndoye, Souadou, Sanko, Tomasz J, Baxter, Cheryl, Wilkinson, Eduan, San, James E, Tshabuila, Derek, Naidoo, Yeshnee, Pillay, Sureshnee, Lessells, Richard, Cissé, Khady, Leye, Abdoulaye, Mbaye, Khalifa Ababacar, Kania, Dramane, Tinto, Bachirou, Traoré, Isidore, Kagone, Sampawendé Thérèse, Ouedraogo, Abdoul Salam, Gifford, Robert J, Lourenço, José, Giovanetti, Marta, Giandhari, Jennifer, de Oliveira, Tulio, Mboup, Souleymane
Published in medRxiv : the preprint server for health sciences (15.11.2023)
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Published in medRxiv : the preprint server for health sciences (15.11.2023)
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