Multiplexed analysis of chromosome conformation at vastly improved sensitivity
Davies, James O J, Telenius, Jelena M, McGowan, Simon J, Roberts, Nigel A, Taylor, Stephen, Higgs, Douglas R, Hughes, Jim R
Published in Nature methods (01.01.2016)
Published in Nature methods (01.01.2016)
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Journal Article
Genetic dissection of the α-globin super-enhancer in vivo
Hay, Deborah, Hughes, Jim R, Babbs, Christian, Davies, James O J, Graham, Bryony J, Hanssen, Lars L P, Kassouf, Mira T, Oudelaar, A Marieke, Sharpe, Jacqueline A, Suciu, Maria C, Telenius, Jelena, Williams, Ruth, Rode, Christina, Li, Pik-Shan, Pennacchio, Len A, Sloane-Stanley, Jacqueline A, Ayyub, Helena, Butler, Sue, Sauka-Spengler, Tatjana, Gibbons, Richard J, Smith, Andrew J H, Wood, William G, Higgs, Douglas R
Published in Nature genetics (01.08.2016)
Published in Nature genetics (01.08.2016)
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Journal Article
Unlinking an lncRNA from Its Associated cis Element
Paralkar, Vikram R., Taborda, Cristian C., Huang, Peng, Yao, Yu, Kossenkov, Andrew V., Prasad, Rishi, Luan, Jing, Davies, James O.J., Hughes, Jim R., Hardison, Ross C., Blobel, Gerd A., Weiss, Mitchell J.
Published in Molecular cell (07.04.2016)
Published in Molecular cell (07.04.2016)
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Journal Article
Loss of Extreme Long-Range Enhancers in Human Neural Crest Drives a Craniofacial Disorder
Long, Hannah K., Osterwalder, Marco, Welsh, Ian C., Hansen, Karissa, Davies, James O.J., Liu, Yiran E., Koska, Mervenaz, Adams, Alexander T., Aho, Robert, Arora, Neha, Ikeda, Kazuya, Williams, Ruth M., Sauka-Spengler, Tatjana, Porteus, Matthew H., Mohun, Tim, Dickel, Diane E., Swigut, Tomek, Hughes, Jim R., Higgs, Douglas R., Visel, Axel, Selleri, Licia, Wysocka, Joanna
Published in Cell stem cell (05.11.2020)
Published in Cell stem cell (05.11.2020)
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Journal Article
Comparative analysis of three-dimensional chromosomal architecture identifies a novel fetal hemoglobin regulatory element
Huang, Peng, Keller, Cheryl A, Giardine, Belinda, Grevet, Jeremy D, Davies, James O J, Hughes, Jim R, Kurita, Ryo, Nakamura, Yukio, Hardison, Ross C, Blobel, Gerd A
Published in Genes & development (15.08.2017)
Published in Genes & development (15.08.2017)
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Journal Article
MLL-AF4 binds directly to a BCL-2 specific enhancer and modulates H3K27 acetylation
Godfrey, Laura, Kerry, Jon, Thorne, Ross, Repapi, Emmanouela, Davies, James O.J, Tapia, Marta, Ballabio, Erica, Hughes, Jim R, Geng, Huimin, Konopleva, Marina, Milne, Thomas A
Published in Experimental hematology (01.03.2017)
Published in Experimental hematology (01.03.2017)
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Journal Article
Defining genome architecture at base-pair resolution
Hua, Peng, Badat, Mohsin, Hanssen, Lars L. P., Hentges, Lance D., Crump, Nicholas, Downes, Damien J., Jeziorska, Danuta M., Oudelaar, A. Marieke, Schwessinger, Ron, Taylor, Stephen, Milne, Thomas A., Hughes, Jim R., Higgs, Doug R., Davies, James O. J.
Published in Nature (London) (01.07.2021)
Published in Nature (London) (01.07.2021)
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Journal Article
How best to identify chromosomal interactions: a comparison of approaches
Davies, James O J, Oudelaar, A Marieke, Higgs, Douglas R, Hughes, Jim R
Published in Nature methods (01.02.2017)
Published in Nature methods (01.02.2017)
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Journal Article
Determining chromatin architecture with Micro Capture-C
Hamley, Joseph C., Li, Hangpeng, Denny, Nicholas, Downes, Damien, Davies, James O. J.
Published in Nature protocols (01.06.2023)
Published in Nature protocols (01.06.2023)
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Journal Article
Analysis of sub-kilobase chromatin topology reveals nano-scale regulatory interactions with variable dependence on cohesin and CTCF
Aljahani, Abrar, Hua, Peng, Karpinska, Magdalena A., Quililan, Kimberly, Davies, James O. J., Oudelaar, A. Marieke
Published in Nature communications (19.04.2022)
Published in Nature communications (19.04.2022)
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Journal Article
Identification of LZTFL1 as a candidate effector gene at a COVID-19 risk locus
Downes, Damien J., Cross, Amy R., Hua, Peng, Roberts, Nigel, Schwessinger, Ron, Cutler, Antony J., Munis, Altar M., Brown, Jill, Mielczarek, Olga, de Andrea, Carlos E., Melero, Ignacio, Gill, Deborah R., Hyde, Stephen C., Knight, Julian C., Todd, John A., Sansom, Stephen N., Issa, Fadi, Davies, James O. J., Hughes, Jim R.
Published in Nature genetics (01.11.2021)
Published in Nature genetics (01.11.2021)
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Journal Article
Single-allele chromatin interactions identify regulatory hubs in dynamic compartmentalized domains
Oudelaar, A. Marieke, Davies, James O. J., Hanssen, Lars L. P., Telenius, Jelena M., Schwessinger, Ron, Liu, Yu, Brown, Jill M., Downes, Damien J., Chiariello, Andrea M., Bianco, Simona, Nicodemi, Mario, Buckle, Veronica J., Dekker, Job, Higgs, Douglas R., Hughes, Jim R.
Published in Nature genetics (01.12.2018)
Published in Nature genetics (01.12.2018)
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Journal Article
Respiratory complications of organophosphorus nerve agent and insecticide poisoning. Implications for respiratory and critical care
Hulse, Elspeth J, Davies, James O J, Simpson, A John, Sciuto, Alfred M, Eddleston, Michael
Published in American journal of respiratory and critical care medicine (15.12.2014)
Published in American journal of respiratory and critical care medicine (15.12.2014)
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Journal Article
BET inhibition disrupts transcription but retains enhancer-promoter contact
Crump, Nicholas T., Ballabio, Erica, Godfrey, Laura, Thorne, Ross, Repapi, Emmanouela, Kerry, Jon, Tapia, Marta, Hua, Peng, Lagerholm, Christoffer, Filippakopoulos, Panagis, Davies, James O. J., Milne, Thomas A.
Published in Nature communications (11.01.2021)
Published in Nature communications (11.01.2021)
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Journal Article
Capture-C: a modular and flexible approach for high-resolution chromosome conformation capture
Downes, Damien J., Smith, Alastair L., Karpinska, Magdalena A., Velychko, Taras, Rue-Albrecht, Kevin, Sims, David, Milne, Thomas A., Davies, James O. J., Oudelaar, A. Marieke, Hughes, Jim R.
Published in Nature protocols (01.02.2022)
Published in Nature protocols (01.02.2022)
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Journal Article
Genotyping of Multiple Genomic Loci with Chromatin Accessibility Profiling in Single Cells Links Clonal Hierarchy with Epigenetic Variation in Acute Myeloid Leukemia
Turkalj, Sven, Jakobsen, Niels Asger, Groom, Angus, Metzner, Marlen, Usukhbayar, Batchimeg, Angulo Salazar, Mirian, Clark, Kevin, Gür, E. Ravza, Hentges, Lance D., Sopp, Paul, Davies, James O.J., Hughes, Jim R., Vyas, Paresh
Published in Blood (15.11.2022)
Published in Blood (15.11.2022)
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Journal Article
An Ancient Transcriptional Hub Couples Developmentally Regulated Gene Expression with Metabolism during Erythropoiesis
Preston, Alexandra E., Frost, Joe N., Badat, Mohsin, Armitage, Andrew E., Wideman, Sarah, Teh, Megan, Norfo, Ruggiero, Roy, Noémi, Davies, James O.J., Beagrie, Robert, Higgs, Douglas R., Drakesmith, Hal
Published in Blood (15.11.2022)
Published in Blood (15.11.2022)
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Journal Article
GTAC enables parallel genotyping of multiple genomic loci with chromatin accessibility profiling in single cells
Turkalj, Sven, Jakobsen, Niels Asger, Groom, Angus, Metzner, Marlen, Riva, Simone G., Gür, E. Ravza, Usukhbayar, Batchimeg, Salazar, Mirian Angulo, Hentges, Lance D., Mickute, Gerda, Clark, Kevin, Sopp, Paul, Davies, James O.J., Hughes, Jim R., Vyas, Paresh
Published in Cell stem cell (04.05.2023)
Published in Cell stem cell (04.05.2023)
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