Tara Oceans: towards global ocean ecosystems biology
Sunagawa, Shinichi, Acinas, Silvia G., Bork, Peer, Bowler, Chris, Eveillard, Damien, Gorsky, Gabriel, Guidi, Lionel, Iudicone, Daniele, Karsenti, Eric, Lombard, Fabien, Ogata, Hiroyuki, Pesant, Stephane, Sullivan, Matthew B., Wincker, Patrick, de Vargas, Colomban
Published in Nature reviews. Microbiology (01.08.2020)
Published in Nature reviews. Microbiology (01.08.2020)
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Giant Viruses Encode Actin-Related Proteins
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Published in Molecular biology and evolution (01.02.2022)
Published in Molecular biology and evolution (01.02.2022)
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Comparative genomics reveals new functional insights in uncultured MAST species
Labarre, Aurelie, López-Escardó, David, Latorre, Francisco, Leonard, Guy, Bucchini, François, Obiol, Aleix, Cruaud, Corinne, Sieracki, Michael E., Jaillon, Olivier, Wincker, Patrick, Vandepoele, Klaas, Logares, Ramiro, Massana, Ramon
Published in The ISME Journal (01.06.2021)
Published in The ISME Journal (01.06.2021)
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Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities
Logares, Ramiro, Sunagawa, Shinichi, Salazar, Guillem, Cornejo‐Castillo, Francisco M, Ferrera, Isabel, Sarmento, Hugo, Hingamp, Pascal, Ogata, Hiroyuki, Vargas, Colomban, Lima‐Mendez, Gipsi, Raes, Jeroen, Poulain, Julie, Jaillon, Olivier, Wincker, Patrick, Kandels‐Lewis, Stefanie, Karsenti, Eric, Bork, Peer, Acinas, Silvia G
Published in Environmental microbiology (01.09.2014)
Published in Environmental microbiology (01.09.2014)
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Accessing the genomic information of unculturable oceanic picoeukaryotes by combining multiple single cells
Mangot, Jean-François, Logares, Ramiro, Sánchez, Pablo, Latorre, Fran, Seeleuthner, Yoann, Mondy, Samuel, Sieracki, Michael E., Jaillon, Olivier, Wincker, Patrick, Vargas, Colomban de, Massana, Ramon
Published in Scientific reports (27.01.2017)
Published in Scientific reports (27.01.2017)
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Genome-enabled phylogenetic and functional reconstruction of an araphid pennate diatom Plagiostriata sp. CCMP470, previously assigned as a radial centric diatom, and its bacterial commensal
Sato, Shinya, Nanjappa, Deepak, Dorrell, Richard G., Vieira, Fabio Rocha Jimenez, Kazamia, Elena, Tirichine, Leila, Veluchamy, Alaguraj, Heilig, Roland, Aury, Jean-Marc, Jaillon, Olivier, Wincker, Patrick, Fussy, Zoltan, Obornik, Miroslav, Muñoz-Gómez, Sergio A., Mann, David G., Bowler, Chris, Zingone, Adriana
Published in Scientific reports (10.06.2020)
Published in Scientific reports (10.06.2020)
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Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes
Hingamp, Pascal, Grimsley, Nigel, Acinas, Silvia G, Clerissi, Camille, Subirana, Lucie, Poulain, Julie, Ferrera, Isabel, Sarmento, Hugo, Villar, Emilie, Lima-Mendez, Gipsi, Faust, Karoline, Sunagawa, Shinichi, Claverie, Jean-Michel, Moreau, Hervé, Desdevises, Yves, Bork, Peer, Raes, Jeroen, de Vargas, Colomban, Karsenti, Eric, Kandels-Lewis, Stefanie, Jaillon, Olivier, Not, Fabrice, Pesant, Stéphane, Wincker, Patrick, Ogata, Hiroyuki
Published in The ISME Journal (01.09.2013)
Published in The ISME Journal (01.09.2013)
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Survey of the green picoalga Bathycoccus genomes in the global ocean
Vannier, Thomas, Leconte, Jade, Seeleuthner, Yoann, Mondy, Samuel, Pelletier, Eric, Aury, Jean-Marc, de Vargas, Colomban, Sieracki, Michael, Iudicone, Daniele, Vaulot, Daniel, Wincker, Patrick, Jaillon, Olivier
Published in Scientific reports (30.11.2016)
Published in Scientific reports (30.11.2016)
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Assessing the viral content of uncultured picoeukaryotes in the global‐ocean by single cell genomics
Castillo, Yaiza M., Mangot, Jean‐François, Benites, Luiz Felipe, Logares, Ramiro, Kuronishi, Megumi, Ogata, Hiroyuki, Jaillon, Olivier, Massana, Ramon, Sebastián, Marta, Vaqué, Dolors
Published in Molecular ecology (01.09.2019)
Published in Molecular ecology (01.09.2019)
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Gene loss and evolutionary rates following whole-genome duplication in teleost fishes
Brunet, Frédéric G, Roest Crollius, Hugues, Paris, Mathilde, Aury, Jean-Marc, Gibert, Patricia, Jaillon, Olivier, Laudet, Vincent, Robinson-Rechavi, Marc
Published in Molecular biology and evolution (01.09.2006)
Published in Molecular biology and evolution (01.09.2006)
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Genome Resolved Biogeography of Mamiellales
Leconte, Jade, Benites, L Felipe, Vannier, Thomas, Wincker, Patrick, Piganeau, Gwenael, Jaillon, Olivier
Published in Genes (07.01.2020)
Published in Genes (07.01.2020)
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Environmental vulnerability of the global ocean epipelagic plankton community interactome
Chaffron, Samuel, Delage, Erwan, Budinich, Marko, Vintache, Damien, Henry, Nicolas, Nef, Charlotte, Ardyna, Mathieu, Zayed, Ahmed A, Junger, Pedro C, Galand, Pierre E, Lovejoy, Connie, Murray, Alison E, Sarmento, Hugo, Acinas, Silvia G, Babin, Marcel, Iudicone, Daniele, Jaillon, Olivier, Karsenti, Eric, Wincker, Patrick, Karp-Boss, Lee, Sullivan, Matthew B, Bowler, Chris, de Vargas, Colomban, Eveillard, Damien
Published in Science advances (01.08.2021)
Published in Science advances (01.08.2021)
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Eukaryotic virus composition can predict the efficiency of carbon export in the global ocean
Kaneko, Hiroto, Blanc-Mathieu, Romain, Endo, Hisashi, Chaffron, Samuel, Delmont, Tom O., Gaia, Morgan, Henry, Nicolas, Hernández-Velázquez, Rodrigo, Nguyen, Canh Hao, Mamitsuka, Hiroshi, Forterre, Patrick, Jaillon, Olivier, de Vargas, Colomban, Sullivan, Matthew B., Suttle, Curtis A., Guidi, Lionel, Ogata, Hiroyuki
Published in iScience (22.01.2021)
Published in iScience (22.01.2021)
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Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages
Lescot, Magali, Hingamp, Pascal, Kojima, Kenji K, Villar, Emilie, Romac, Sarah, Veluchamy, Alaguraj, Boccara, Martine, Jaillon, Olivier, Iudicone, Daniele, Bowler, Chris, Wincker, Patrick, Claverie, Jean-Michel, Ogata, Hiroyuki
Published in The ISME Journal (01.05.2016)
Published in The ISME Journal (01.05.2016)
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Genomic adaptation of the picoeukaryote Pelagomonas calceolata to iron-poor oceans revealed by a chromosome-scale genome sequence
Guérin, Nina, Ciccarella, Marta, Flamant, Elisa, Frémont, Paul, Mangenot, Sophie, Istace, Benjamin, Noel, Benjamin, Belser, Caroline, Bertrand, Laurie, Labadie, Karine, Cruaud, Corinne, Romac, Sarah, Bachy, Charles, Gachenot, Martin, Pelletier, Eric, Alberti, Adriana, Jaillon, Olivier, Wincker, Patrick, Aury, Jean-Marc, Carradec, Quentin
Published in Communications biology (16.09.2022)
Published in Communications biology (16.09.2022)
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“Changing by doubling”, the impact of Whole Genome Duplications in the evolution of eukaryotes
Jaillon, Olivier, Aury, Jean-Marc, Wincker, Patrick
Published in Comptes rendus. Biologies (01.02.2009)
Published in Comptes rendus. Biologies (01.02.2009)
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Comparative genomic analysis reveals independent expansion of a lineage-specific gene family in vertebrates: the class II cytokine receptors and their ligands in mammals and fish
Lutfalla, Georges, Roest Crollius, Hugues, Stange-Thomann, Nicole, Jaillon, Olivier, Mogensen, Knud, Monneron, Danièle
Published in BMC genomics (17.07.2003)
Published in BMC genomics (17.07.2003)
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Human-ovine comparative sequencing of a 250-kb imprinted domain encompassing the callipyge (clpg) locus and identification of six imprinted transcripts: DLK1, DAT, GTL2, PEG11, antiPEG11, and MEG8
Charlier, C, Segers, K, Wagenaar, D, Karim, L, Berghmans, S, Jaillon, O, Shay, T, Weissenbach, J, Cockett, N, Gyapay, G, Georges, M
Published in Genome research (01.05.2001)
Published in Genome research (01.05.2001)
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