Curare and GenExVis: a versatile toolkit for analyzing and visualizing RNA-Seq data
Blumenkamp, Patrick, Pfister, Max, Diedrich, Sonja, Brinkrolf, Karina, Jaenicke, Sebastian, Goesmann, Alexander
Published in BMC bioinformatics (29.03.2024)
Published in BMC bioinformatics (29.03.2024)
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Whole genome sequencing versus traditional genotyping for investigation of a Mycobacterium tuberculosis outbreak: a longitudinal molecular epidemiological study
Roetzer, Andreas, Diel, Roland, Kohl, Thomas A, Rückert, Christian, Nübel, Ulrich, Blom, Jochen, Wirth, Thierry, Jaenicke, Sebastian, Schuback, Sieglinde, Rüsch-Gerdes, Sabine, Supply, Philip, Kalinowski, Jörn, Niemann, Stefan
Published in PLoS medicine (01.02.2013)
Published in PLoS medicine (01.02.2013)
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Microbial diversity in different compartments of an aquaponics system
Schmautz, Zala, Graber, Andreas, Jaenicke, Sebastian, Goesmann, Alexander, Junge, Ranka, Smits, Theo H. M.
Published in Archives of microbiology (01.05.2017)
Published in Archives of microbiology (01.05.2017)
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Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing
Zakrzewski, Martha, Goesmann, Alexander, Jaenicke, Sebastian, Jünemann, Sebastian, Eikmeyer, Felix, Szczepanowski, Rafael, Al-Soud, Waleed Abu, Sørensen, Søren, Pühler, Alfred, Schlüter, Andreas
Published in Journal of biotechnology (30.04.2012)
Published in Journal of biotechnology (30.04.2012)
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Comparative and joint analysis of two metagenomic datasets from a biogas fermenter obtained by 454-pyrosequencing
Jaenicke, Sebastian, Ander, Christina, Bekel, Thomas, Bisdorf, Regina, Dröge, Marcus, Gartemann, Karl-Heinz, Jünemann, Sebastian, Kaiser, Olaf, Krause, Lutz, Tille, Felix, Zakrzewski, Martha, Pühler, Alfred, Schlüter, Andreas, Goesmann, Alexander
Published in PloS one (26.01.2011)
Published in PloS one (26.01.2011)
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High-quality genome sequence of Pichia pastoris CBS7435
Küberl, Andreas, Schneider, Jessica, Thallinger, Gerhard G., Anderl, Ingund, Wibberg, Daniel, Hajek, Tanja, Jaenicke, Sebastian, Brinkrolf, Karina, Goesmann, Alexander, Szczepanowski, Rafael, Pühler, Alfred, Schwab, Helmut, Glieder, Anton, Pichler, Harald
Published in Journal of biotechnology (20.07.2011)
Published in Journal of biotechnology (20.07.2011)
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Journal Article
Effect of Long-Term Farming Practices on Agricultural Soil Microbiome Members Represented by Metagenomically Assembled Genomes (MAGs) and Their Predicted Plant-Beneficial Genes
Nelkner, Johanna, Henke, Christian, Lin, Timo Wentong, Pätzold, Wiebke, Hassa, Julia, Jaenicke, Sebastian, Grosch, Rita, Pühler, Alfred, Sczyrba, Alexander, Schlüter, Andreas
Published in Genes (03.06.2019)
Published in Genes (03.06.2019)
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Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient
Schröder, Jasmin, Maus, Irena, Meyer, Katja, Wördemann, Stephanie, Blom, Jochen, Jaenicke, Sebastian, Schneider, Jessica, Trost, Eva, Tauch, Andreas
Published in BMC genomics (23.04.2012)
Published in BMC genomics (23.04.2012)
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Journal Article
Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming
BLOM, Jochen, JAKOBI, Tobias, DOPPMEIER, Daniel, JAENICKE, Sebastian, KALINOWSKI, Jorn, STOYE, Jens, GOESMANN, Alexander
Published in Bioinformatics (Oxford, England) (15.05.2011)
Published in Bioinformatics (Oxford, England) (15.05.2011)
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Journal Article
Pangenomic Study of Corynebacterium diphtheriae That Provides Insights into the Genomic Diversity of Pathogenic Isolates from Cases of Classical Diphtheria, Endocarditis, and Pneumonia
Trost, Eva, Blom, Jochen, de Castro Soares, Siomar, Huang, I-Hsiu, Al-Dilaimi, Arwa, Schröder, Jasmin, Jaenicke, Sebastian, Dorella, Fernanda A, Rocha, Flavia S, Miyoshi, Anderson, Azevedo, Vasco, Schneider, Maria P, Silva, Artur, Camello, Thereza C, Sabbadini, Priscila S, Santos, Cíntia S, Santos, Louisy S, Hirata, Raphael, Jr, Mattos-Guaraldi, Ana L, Efstratiou, Androulla, Schmitt, Michael P, Ton-That, Hung, Tauch, Andreas
Published in Journal of Bacteriology (01.06.2012)
Published in Journal of Bacteriology (01.06.2012)
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Journal Article
Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing
Kröber, Magdalena, Bekel, Thomas, Diaz, Naryttza N., Goesmann, Alexander, Jaenicke, Sebastian, Krause, Lutz, Miller, Dimitri, Runte, Kai J., Viehöver, Prisca, Pühler, Alfred, Schlüter, Andreas
Published in Journal of biotechnology (01.06.2009)
Published in Journal of biotechnology (01.06.2009)
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Compared to conventional, ecological intensive management promotes beneficial proteolytic soil microbial communities for agro-ecosystem functioning under climate change-induced rain regimes
Lori, Martina, Piton, Gabin, Symanczik, Sarah, Legay, Nicolas, Brussaard, Lijbert, Jaenicke, Sebastian, Nascimento, Eduardo, Reis, Filipa, Sousa, José Paulo, Mäder, Paul, Gattinger, Andreas, Clément, Jean-Christophe, Foulquier, Arnaud
Published in Scientific reports (29.04.2020)
Published in Scientific reports (29.04.2020)
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Journal Article
The Sinorhizobium fredii HH103 Genome: A Comparative Analysis With S. fredii Strains Differing in Their Symbiotic Behavior With Soybean
Vinardell, José-María, Acosta-Jurado, Sebastián, Zehner, Susanne, Göttfert, Michael, Becker, Anke, Baena, Irene, Blom, Jochem, Crespo-Rivas, Juan Carlos, Goesmann, Alexander, Jaenicke, Sebastian, Krol, Elizaveta, McIntosh, Matthew, Margaret, Isabel, Pérez-Montaño, Francisco, Schneiker-Bekel, Susanne, Serranía, Javier, Szczepanowski, Rafael, Buendía, Ana-María, Lloret, Javier, Bonilla, Ildefonso, Pühler, Alfred, Ruiz-Sainz, José-Enrique, Weidner, Stefan
Published in Molecular plant-microbe interactions (01.07.2015)
Published in Molecular plant-microbe interactions (01.07.2015)
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Journal Article
The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence
Trost, Eva, Ott, Lisa, Schneider, Jessica, Schröder, Jasmin, Jaenicke, Sebastian, Goesmann, Alexander, Husemann, Peter, Stoye, Jens, Dorella, Fernanda Alves, Rocha, Flavia Souza, Soares, Siomar de Castro, D'Afonseca, Vívian, Miyoshi, Anderson, Ruiz, Jeronimo, Silva, Artur, Azevedo, Vasco, Burkovski, Andreas, Guiso, Nicole, Join-Lambert, Olivier F, Kayal, Samer, Tauch, Andreas
Published in BMC genomics (30.12.2010)
Published in BMC genomics (30.12.2010)
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Journal Article
Flexible metagenome analysis using the MGX framework
Jaenicke, Sebastian, Albaum, Stefan P, Blumenkamp, Patrick, Linke, Burkhard, Stoye, Jens, Goesmann, Alexander
Published in Microbiome (24.04.2018)
Published in Microbiome (24.04.2018)
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The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms
Rupp, Oliver, Brinkrolf, Karina, Buerth, Christoph, Kunigo, Maya, Schneider, Jessica, Jaenicke, Sebastian, Goesmann, Alexander, Pühler, Alfred, Jaeger, Karl-Erich, Ernst, Joachim F.
Published in Journal of biotechnology (01.10.2015)
Published in Journal of biotechnology (01.10.2015)
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Journal Article
Distinct Nitrogen Provisioning From Organic Amendments in Soil as Influenced by Farming System and Water Regime
Lori, Martina, Symanczik, Sarah, Mäder, Paul, Efosa, Norah, Jaenicke, Sebastian, Buegger, Franz, Tresch, Simon, Goesmann, Alexander, Gattinger, Andreas
Published in Frontiers in environmental science (04.06.2018)
Published in Frontiers in environmental science (04.06.2018)
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Journal Article
Proteorhodopsin light-enhanced growth linked to vitamin-B1 acquisition in marine Flavobacteria
Gómez-Consarnau, Laura, González, José M, Riedel, Thomas, Jaenicke, Sebastian, Wagner-Döbler, Irene, Sañudo-Wilhelmy, Sergio A, Fuhrman, Jed A
Published in The ISME Journal (01.05.2016)
Published in The ISME Journal (01.05.2016)
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Journal Article
Genomics of the Proteorhodopsin-Containing Marine Flavobacterium Dokdonia sp. Strain MED134
González, José M., Pinhassi, Jarone, Fernández-Gómez, Beatriz, Coll-Lladó, Montserrat, González-Velázquez, Mónica, Puigbò, Pere, Jaenicke, Sebastian, Gómez-Consarnau, Laura, Fernàndez-Guerra, Antoni, Goesmann, Alexander, Pedrós-Alió, Carlos
Published in Applied and Environmental Microbiology (01.12.2011)
Published in Applied and Environmental Microbiology (01.12.2011)
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Journal Article
Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions
Stolze, Yvonne, Zakrzewski, Martha, Maus, Irena, Eikmeyer, Felix, Jaenicke, Sebastian, Rottmann, Nils, Siebner, Clemens, Pühler, Alfred, Schlüter, Andreas
Published in Biotechnology for biofuels (08.02.2015)
Published in Biotechnology for biofuels (08.02.2015)
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