Multi-scale models of whole cells: progress and challenges
Georgouli, Konstantia, Yeom, Jae-Seung, Blake, Robert C., Navid, Ali
Published in Frontiers in cell and developmental biology (07.11.2023)
Published in Frontiers in cell and developmental biology (07.11.2023)
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Journal Article
Scalable Topological Data Analysis and Visualization for Evaluating Data-Driven Models in Scientific Applications
Liu, Shusen, Gaffney, Jim, Peterson, Luc, Robinson, Peter B., Bhatia, Harsh, Pascucci, Valerio, Spears, Brian K., Bremer, Peer-Timo, Wang, Di, Maljovec, Dan, Anirudh, Rushil, Thiagarajan, Jayaraman J., Jacobs, Sam Ade, Van Essen, Brian C., Hysom, David, Yeom, Jae-Seung
Published in IEEE transactions on visualization and computer graphics (01.01.2020)
Published in IEEE transactions on visualization and computer graphics (01.01.2020)
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Journal Article
Programming Multiprocessors with Explicitly Managed Memory Hierarchies
Schneider, S., Jae-Seung Yeom, Nikolopoulos, D.S.
Published in Computer (Long Beach, Calif.) (01.12.2009)
Published in Computer (Long Beach, Calif.) (01.12.2009)
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Journal Article
TRAM: Optimizing Fine-Grained Communication with Topological Routing and Aggregation of Messages
Wesolowski, Lukasz, Venkataraman, Ramprasad, Gupta, Abhishek, Jae-Seung Yeom, Bisset, Keith, Yanhua Sun, Jetley, Pritish, Quinn, Thomas R., Kale, Laxmikant V.
Published in 2014 43rd International Conference on Parallel Processing (01.09.2014)
Published in 2014 43rd International Conference on Parallel Processing (01.09.2014)
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Conference Proceeding
Enabling machine learning-ready HPC ensembles with Merlin
Peterson, J. Luc, Bay, Ben, Koning, Joe, Robinson, Peter, Semler, Jessica, White, Jeremy, Anirudh, Rushil, Athey, Kevin, Bremer, Peer-Timo, Di Natale, Francesco, Fox, David, Gaffney, Jim A., Jacobs, Sam A., Kailkhura, Bhavya, Kustowski, Bogdan, Langer, Steven, Spears, Brian, Thiagarajan, Jayaraman, Van Essen, Brian, Yeom, Jae-Seung
Published in Future generation computer systems (01.06.2022)
Published in Future generation computer systems (01.06.2022)
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Journal Article
Massively Parallel Simulations of Spread of Infectious Diseases over Realistic Social Networks
Bhatele, Abhinav, Yeom, Jae-Seung, Jain, Nikhil, Kuhlman, Chris J., Livnat, Yarden, Bisset, Keith R., Kale, Laxmikant V., Marathe, Madhav V.
Published in 2017 17th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGRID) (14.05.2017)
Published in 2017 17th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGRID) (14.05.2017)
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Conference Proceeding
Security in All-Optical Networks: Self-Organization and Attack Avoidance
Jae-Seung Yeom, Tonguz, O., Castanon, G.
Published in 2007 IEEE International Conference on Communications (01.06.2007)
Published in 2007 IEEE International Conference on Communications (01.06.2007)
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Conference Proceeding
Parallelizing Training of Deep Generative Models on Massive Scientific Datasets
Jacobs, Sam Ade, Gaffney, Jim, Benson, Tom, Robinson, Peter, Peterson, Luc, Spears, Brian, Van Essen, Brian, Hysom, David, Yeom, Jae-Seung, Moon, Tim, Anirudh, Rushil, Thiagaranjan, Jayaraman J., Liu, Shusen, Bremer, Peer-Timo
Published in 2019 IEEE International Conference on Cluster Computing (CLUSTER) (01.09.2019)
Published in 2019 IEEE International Conference on Cluster Computing (CLUSTER) (01.09.2019)
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Conference Proceeding
LibPowerMon: A Lightweight Profiling Framework to Profile Program Context and System-Level Metrics
Marathe, Aniruddha, Gahvari, Hormozd, Jae-Seung Yeom, Bhatele, Abhinav
Published in 2016 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW) (01.05.2016)
Published in 2016 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW) (01.05.2016)
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Conference Proceeding
Exploratory Modeling and Simulation of the Evolutionary Dynamics of Single-Stranded RNA Virus Populations
Jae-Seung Yeom, Kostova-Vassilevska, Tanya, Barnes, Peter D., Jefferson, David R., Oppelstrup, Tomas
Published in 2017 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW) (01.05.2017)
Published in 2017 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW) (01.05.2017)
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Conference Proceeding
Overcoming the Scalability Challenges of Epidemic Simulations on Blue Waters
Jae-Seung Yeom, Bhatele, Abhinav, Bisset, Keith, Bohm, Eric, Gupta, Abhishek, Kale, Laxmikant V., Marathe, Madhav, Nikolopoulos, Dimitrios S., Schulz, Martin, Wesolowski, Lukasz
Published in 2014 IEEE 28th International Parallel and Distributed Processing Symposium (01.05.2014)
Published in 2014 IEEE 28th International Parallel and Distributed Processing Symposium (01.05.2014)
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Conference Proceeding
Charm++ and MPI: Combining the Best of Both Worlds
Jain, Nikhil, Bhatele, Abhinav, Jae-Seung Yeom, Adams, Mark F., Miniati, Francesco, Chao Mei, Kale, Laxmikant V.
Published in 2015 IEEE International Parallel and Distributed Processing Symposium (01.05.2015)
Published in 2015 IEEE International Parallel and Distributed Processing Symposium (01.05.2015)
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Conference Proceeding
Predicting Cross-Architecture Performance of Parallel Programs
Nichols, Daniel, Movsesyan, Alexander, Yeom, Jae-Seung, Sarkar, Abhik, Milroy, Daniel, Patki, Tapasya, Bhatele, Abhinav
Published in 2024 IEEE International Parallel and Distributed Processing Symposium (IPDPS) (27.05.2024)
Published in 2024 IEEE International Parallel and Distributed Processing Symposium (IPDPS) (27.05.2024)
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Conference Proceeding
Parallel Programming Models for Heterogeneous Multicore Architectures
Ferrer, Roger, Bellens, Pieter, Beltran, Vicenc, Gonzalez, Marc, Martorell, Xavier, Badia, Rosa M, Ayguade, Eduard, Yeom, Jae-Seung, Schneider, Scott, Koukos, Konstantinos, Alvanos, Michail, Nikolopoulos, Dimitros S, Bilas, Angelos
Published in IEEE MICRO (01.09.2010)
Published in IEEE MICRO (01.09.2010)
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Journal Article
Strider: Runtime Support for Optimizing Strided Data Accesses on Multi-Cores with Explicitly Managed Memories
Jae-Seung Yeom, Nikolopoulos, Dimitrios S
Published in 2010 ACM/IEEE International Conference for High Performance Computing, Networking, Storage and Analysis (01.11.2010)
Published in 2010 ACM/IEEE International Conference for High Performance Computing, Networking, Storage and Analysis (01.11.2010)
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Conference Proceeding
High-Performance Interaction-Based Simulation of Gut Immunopathologies with ENteric Immunity Simulator (ENISI)
Bisset, K., Alam, M. M., Bassaganya-Riera, J., Carbo, A., Eubank, S., Hontecillas, R., Hoops, S., Yongguo Mei, Wendelsdorf, K., Dawen Xie, Jae-Seung Yeom, Marathe, M. V.
Published in 2012 IEEE 26th International Parallel and Distributed Processing Symposium (01.05.2012)
Published in 2012 IEEE 26th International Parallel and Distributed Processing Symposium (01.05.2012)
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Conference Proceeding
Ubique: A New Model for Untangling Inter-task Data Dependence in Complex HPC Workflows
Yeom, Jae-Seung, Ahn, Dong H., Lumsden, Ian, Luettgau, Jakob, Caino-Lores, Silvina, Taufer, Michela
Published in 2022 IEEE 18th International Conference on e-Science (e-Science) (01.10.2022)
Published in 2022 IEEE 18th International Conference on e-Science (e-Science) (01.10.2022)
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Conference Proceeding
Performance modeling under resource constraints using deep transfer learning
Marathe, Aniruddha, Anirudh, Rushil, Jain, Nikhil, Bhatele, Abhinav, Thiagarajan, Jayaraman, Kailkhura, Bhavya, Yeom, Jae-Seung, Rountree, Barry, Gamblin, Todd
Published in Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis (12.11.2017)
Published in Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis (12.11.2017)
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Conference Proceeding
One Step Closer to Converged Computing: Achieving Scalability with Cloud-Native HPC
Milroy, Daniel J., Misale, Claudia, Georgakoudis, Giorgis, Elengikal, Tonia, Sarkar, Abhik, Drocco, Maurizio, Patki, Tapasya, Yeom, Jae-Seung, Gutierrez, Carlos Eduardo Arango, Ahn, Dong H., Park, Yoonho
Published in 2022 IEEE/ACM 4th International Workshop on Containers and New Orchestration Paradigms for Isolated Environments in HPC (CANOPIE-HPC) (01.11.2022)
Published in 2022 IEEE/ACM 4th International Workshop on Containers and New Orchestration Paradigms for Isolated Environments in HPC (CANOPIE-HPC) (01.11.2022)
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Conference Proceeding
PADDLE: Performance Analysis Using a Data-Driven Learning Environment
Thiagarajan, Jayaraman J., Anirudh, Rushil, Kailkhura, Bhavya, Jain, Nikhil, Islam, Tanzima, Bhatele, Abhinav, Yeom, Jae-Seung, Gamblin, Todd
Published in 2018 IEEE International Parallel and Distributed Processing Symposium (IPDPS) (01.05.2018)
Published in 2018 IEEE International Parallel and Distributed Processing Symposium (IPDPS) (01.05.2018)
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Conference Proceeding