Massively multiplex chemical transcriptomics at single-cell resolution
Srivatsan, Sanjay R, McFaline-Figueroa, José L, Ramani, Vijay, Saunders, Lauren, Cao, Junyue, Packer, Jonathan, Pliner, Hannah A, Jackson, Dana L, Daza, Riza M, Christiansen, Lena, Zhang, Fan, Steemers, Frank, Shendure, Jay, Trapnell, Cole
Published in Science (American Association for the Advancement of Science) (03.01.2020)
Published in Science (American Association for the Advancement of Science) (03.01.2020)
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Single-Cell Transcriptomic Comparison of Human Fetal Retina, hPSC-Derived Retinal Organoids, and Long-Term Retinal Cultures
Sridhar, Akshayalakshmi, Hoshino, Akina, Finkbeiner, Connor R., Chitsazan, Alex, Dai, Li, Haugan, Alexandra K., Eschenbacher, Kayla M., Jackson, Dana L., Trapnell, Cole, Bermingham-McDonogh, Olivia, Glass, Ian, Reh, Thomas A.
Published in Cell reports (Cambridge) (04.02.2020)
Published in Cell reports (Cambridge) (04.02.2020)
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Multipotent progenitors and hematopoietic stem cells arise independently from hemogenic endothelium in the mouse embryo
Dignum, Tessa, Varnum-Finney, Barbara, Srivatsan, Sanjay R., Dozono, Stacey, Waltner, Olivia, Heck, Adam M., Ishida, Takashi, Nourigat-McKay, Cynthia, Jackson, Dana L., Rafii, Shahin, Trapnell, Cole, Bernstein, Irwin D., Hadland, Brandon
Published in Cell reports (Cambridge) (14.09.2021)
Published in Cell reports (Cambridge) (14.09.2021)
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Engineering a niche supporting hematopoietic stem cell development using integrated single-cell transcriptomics
Hadland, Brandon, Varnum-Finney, Barbara, Dozono, Stacey, Dignum, Tessa, Nourigat-McKay, Cynthia, Heck, Adam M., Ishida, Takashi, Jackson, Dana L., Itkin, Tomer, Butler, Jason M., Rafii, Shahin, Trapnell, Cole, Bernstein, Irwin D.
Published in Nature communications (24.03.2022)
Published in Nature communications (24.03.2022)
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Journal Article
Single-cell landscape of nuclear configuration and gene expression during stem cell differentiation and X inactivation
Bonora, Giancarlo, Ramani, Vijay, Singh, Ritambhara, Fang, He, Jackson, Dana L, Srivatsan, Sanjay, Qiu, Ruolan, Lee, Choli, Trapnell, Cole, Shendure, Jay, Duan, Zhijun, Deng, Xinxian, Noble, William S, Disteche, Christine M
Published in Genome Biology (27.09.2021)
Published in Genome Biology (27.09.2021)
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Journal Article
The DEAD-box RNA helicase DDX6 is required for efficient encapsidation of a retroviral genome
Yu, Shuyuarn F, Lujan, Phillip, Jackson, Dana L, Emerman, Michael, Linial, Maxine L
Published in PLoS pathogens (01.10.2011)
Published in PLoS pathogens (01.10.2011)
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Journal Article
Single-cell analysis of chromatin and expression reveals age- and sex-associated alterations in the human heart
Read, David F., Booth, Gregory T., Daza, Riza M., Jackson, Dana L., Gladden, Rula Green, Srivatsan, Sanjay R., Ewing, Brent, Franks, Jennifer M., Spurrell, Cailyn H., Gomes, Anne Roshella, O’Day, Diana, Gogate, Aishwarya A., Martin, Beth K., Larson, Haleigh, Pfleger, Christian, Starita, Lea, Lin, Yiing, Shendure, Jay, Lin, Shin, Trapnell, Cole
Published in Communications biology (26.08.2024)
Published in Communications biology (26.08.2024)
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Journal Article
New World Simian Foamy Virus Infections In Vivo and In Vitro
Stenbak, Carolyn R, Craig, Karen L, Ivanov, Sergei B, Wang, Xiaoxing, Soliven, Khanh C, Jackson, Dana L, Gutierrez, Gustavo A, Engel, Gregory, Jones-Engel, Lisa, Linial, Maxine L
Published in Journal of Virology (01.01.2014)
Published in Journal of Virology (01.01.2014)
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Journal Article
Trajectory analysis quantifies transcriptional plasticity during macrophage polarization
Liu, Serena X., Gustafson, Heather H., Jackson, Dana L., Pun, Suzie H., Trapnell, Cole
Published in Scientific reports (23.07.2020)
Published in Scientific reports (23.07.2020)
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Journal Article
Proteostasis governs differential temperature sensitivity across embryonic cell types
Dorrity, Michael W, Saunders, Lauren M, Duran, Madeleine, Srivatsan, Sanjay R, Barkan, Eliza, Jackson, Dana L, Sattler, Sydney M, Ewing, Brent, Queitsch, Christine, Shendure, Jay, Raible, David W, Kimelman, David, Trapnell, Cole
Published in Cell (09.11.2023)
Published in Cell (09.11.2023)
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Journal Article
Population dynamics of rhesus macaques and associated foamy virus in Bangladesh
Feeroz, Mostafa M, Soliven, Khanh, Small, Christopher T, Engel, Gregory A, Andreina Pacheco, M, Yee, JoAnn L, Wang, Xiaoxing, Kamrul Hasan, M, Oh, Gunwha, Levine, Kathryn L, Rabiul Alam, S M, Craig, Karen L, Jackson, Dana L, Lee, Eun-Gyung, Barry, Peter A, Lerche, Nicholas W, Escalante, Ananias A, Matsen Iv, Frederick A, Linial, Maxine L, Jones-Engel, Lisa
Published in Emerging microbes & infections (01.05.2013)
Published in Emerging microbes & infections (01.05.2013)
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Multiplex single-cell chemical genomics reveals the kinase dependence of the response to targeted therapy
McFaline-Figueroa, José L., Srivatsan, Sanjay, Hill, Andrew J., Gasperini, Molly, Jackson, Dana L., Saunders, Lauren, Domcke, Silvia, Regalado, Samuel G., Lazarchuck, Paul, Alvarez, Sarai, Monnat, Raymond J., Shendure, Jay, Trapnell, Cole
Published in Cell genomics (14.02.2024)
Published in Cell genomics (14.02.2024)
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Journal Article
Dystrophin deficiency impairs cell junction formation during embryonic myogenesis from pluripotent stem cells
Mozin, Elise, Massouridès, Emmanuelle, Mournetas, Virginie, Lièvre, Clémence, Bourdon, Audrey, Jackson, Dana L., Packer, Jonathan S., Seong, Juyoung, Trapnell, Cole, Le Guiner, Caroline, Adjali, Oumeya, Pinset, Christian, Mack, David L., Dupont, Jean-Baptiste
Published in iScience (19.07.2024)
Published in iScience (19.07.2024)
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Journal Article
A Seminomadic Population in Bangladesh with Extensive Exposure to Macaques Does Not Exhibit High Levels of Zoonotic Simian Foamy Virus Infection
Craig, Karen L, Hasan, M Kamrul, Jackson, Dana L, Engel, Gregory A, Soliven, Khanh, Feeroz, Mostafa M, Wang, Xiaoxing, Jones-Engel, Lisa, Linial, Maxine L
Published in Journal of virology (01.07.2015)
Published in Journal of virology (01.07.2015)
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Journal Article
Zoonotic simian foamy virus in Bangladesh reflects diverse patterns of transmission and co-infection
Engel, Gregory A, Small, Christopher T, Soliven, Khanh, Feeroz, Mostafa M, Wang, Xiaoxing, Kamrul Hasan, M, Oh, Gunwha, Rabiul Alam, S M, Craig, Karen L, Jackson, Dana L, Matsen Iv, Frederick A, Linial, Maxine L, Jones-Engel, Lisa
Published in Emerging microbes & infections (01.09.2013)
Published in Emerging microbes & infections (01.09.2013)
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Journal Article
Clonal Analysis Reveals Functional and Transcriptional Heterogeneity of Self-Renewing Fetal Liver Hematopoietic Stem Cells
Ishida, Takashi, Heck, Adam M, Varnum-Finney, Barbara, Dozono, Stacey, Nourigat-Mckay, Cynthia, Kraskouskas, Katie, Wellington, Rachel, Waltner, Olivia, Root, Christina, Jackson, Dana L, Trapnell, Cole, Rafii, Shahin, Bernstein, Irwin D., Hadland, Brandon
Published in Blood (15.11.2022)
Published in Blood (15.11.2022)
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Journal Article
Multiplex single-cell chemical genomics reveals the kinase dependence of the response to targeted therapy
Mcfaline-Figueroa, Jose L, Srivatsan, Sanjay, Hill, Andrew J, Gasperini, Molly, Jackson, Dana L, Saunders, Lauren, Domcke, Silvia, Regalado, Samuel G, Lazarchuck, Paul, Alvarez, Sarai, Monnat, Raymond J, Shendure, Jay, Cole Trapnell
Published in bioRxiv (14.06.2023)
Published in bioRxiv (14.06.2023)
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Paper
Adapting human resource planning in a changing business environment
Greer, Charles R., Jackson, Dana L., Fiorito, Jack
Published in Human resource management (01.04.1989)
Published in Human resource management (01.04.1989)
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