HIV-1 variants are archived throughout infection and persist in the reservoir
Brooks, Kelsie, Jones, Bradley R, Dilernia, Dario A, Wilkins, Daniel J, Claiborne, Daniel T, McInally, Samantha, Gilmour, Jill, Kilembe, William, Joy, Jeffrey B, Allen, Susan A, Brumme, Zabrina L, Hunter, Eric
Published in PLoS pathogens (01.06.2020)
Published in PLoS pathogens (01.06.2020)
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HIV proviral genetic diversity, compartmentalization and inferred dynamics in lung and blood during long-term suppressive antiretroviral therapy
Shahid, Aniqa, Jones, Bradley R, Yang, Julia S. W, Dong, Winnie, Shaipanich, Tawimas, Donohoe, Kathryn, Brumme, Chanson J, Joy, Jeffrey B, Leung, Janice M, Brumme, Zabrina L
Published in PLoS pathogens (04.11.2022)
Published in PLoS pathogens (04.11.2022)
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Journal Article
Structural Factors Controlling the Self-Assembly of Columnar Liquid Crystals
Foster, E. Johan, Jones, R. Bradley, Lavigueur, Christine, Williams, Vance E
Published in Journal of the American Chemical Society (05.07.2006)
Published in Journal of the American Chemical Society (05.07.2006)
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ANGES: reconstructing ANcestral GEnomeS maps
JONES, Bradley R, RAJARAMAN, Ashok, TANNIER, Eric, CHAUVE, Cedric
Published in Bioinformatics (15.09.2012)
Published in Bioinformatics (15.09.2012)
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Journal Article
HIV reservoirs are dominated by genetically younger and clonally enriched proviruses
Kinloch, Natalie N, Shahid, Aniqa, Dong, Winnie, Kirkby, Don, Jones, Bradley R, Beelen, Charlotte J, MacMillan, Daniel, Lee, Guinevere Q, Mota, Talia M, Sudderuddin, Hanwei, Barad, Evan, Harris, Marianne, Brumme, Chanson J, Jones, R Brad, Brockman, Mark A, Joy, Jeffrey B, Brumme, Zabrina L
Published in mBio (19.12.2023)
Published in mBio (19.12.2023)
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Journal Article
Proviral Turnover During Untreated HIV Infection Is Dynamic and Variable Between Hosts, Impacting Reservoir Composition on ART
Brooks, Kelsie, Omondi, F Harrison, Liang, Richard H, Sudderuddin, Hanwei, Jones, Bradley R, Joy, Jeffrey B, Brumme, Chanson J, Hunter, Eric, Brumme, Zabrina L
Published in Frontiers in microbiology (19.08.2021)
Published in Frontiers in microbiology (19.08.2021)
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Journal Article
HIV Proviral Burden, Genetic Diversity, and Dynamics in Viremic Controllers Who Subsequently Initiated Suppressive Antiretroviral Therapy
Omondi, F Harrison, Sudderuddin, Hanwei, Shahid, Aniqa, Kinloch, Natalie N, Jones, Bradley R, Miller, Rachel L, Tsai, Olivia, MacMillan, Daniel, Trocha, Alicja, Brockman, Mark A, Brumme, Chanson J, Joy, Jeffrey B, Liang, Richard, Walker, Bruce D, Brumme, Zabrina L
Published in mBio (21.12.2021)
Published in mBio (21.12.2021)
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Journal Article
Longitudinal within-host evolution of HIV Nef-mediated CD4, HLA and SERINC5 downregulation activity: a case study
Sudderuddin, Hanwei, Kinloch, Natalie N, Jin, Steven W, Miller, Rachel L, Jones, Bradley R, Brumme, Chanson J, Joy, Jeffrey B, Brockman, Mark A, Brumme, Zabrina L
Published in Retrovirology (09.01.2020)
Published in Retrovirology (09.01.2020)
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Journal Article
Tree shape‐based approaches for the comparative study of cophylogeny
Avino, Mariano, Ng, Garway T., He, Yiying, Renaud, Mathias S., Jones, Bradley R., Poon, Art F. Y.
Published in Ecology and evolution (01.06.2019)
Published in Ecology and evolution (01.06.2019)
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Journal Article
"Community 101 for researchers": an online training program to build capacity for ethical community-engaged research with Native Hawaiians and Pacific Islanders
Chung-Do, Jane J, Scott, Samantha Keaulana, Jones, Bradley R, Look, Mele A, Taira, Deborah A, Palafox, Neal A, Farrar, Kamahanahokulani, Mau, Marjorie K Leimomi M
Published in Frontiers in public health (2023)
Published in Frontiers in public health (2023)
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Journal Article
Treeio: An R Package for Phylogenetic Tree Input and Output with Richly Annotated and Associated Data
Wang, Li-Gen, Lam, Tommy Tsan-Yuk, Xu, Shuangbin, Dai, Zehan, Zhou, Lang, Feng, Tingze, Guo, Pingfan, Dunn, Casey W, Jones, Bradley R, Bradley, Tyler, Zhu, Huachen, Guan, Yi, Jiang, Yong, Yu, Guangchuang
Published in Molecular biology and evolution (01.02.2020)
Published in Molecular biology and evolution (01.02.2020)
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Journal Article
Phylogenetic approach to recover integration dates of latent HIV sequences within-host
Jones, Bradley R., Kinloch, Natalie N., Horacsek, Joshua, Ganase, Bruce, Harris, Marianne, Harrigan, P. Richard, Jones, R. Brad, Brockman, Mark A., Joy, Jeffrey B., Poon, Art F. Y., Brumme, Zabrina L.
Published in Proceedings of the National Academy of Sciences - PNAS (18.09.2018)
Published in Proceedings of the National Academy of Sciences - PNAS (18.09.2018)
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Journal Article
HIV Diversity and Genetic Compartmentalization in Blood and Testes during Suppressive Antiretroviral Therapy
Miller, Rachel L, Ponte, Rosalie, Jones, Bradley R, Kinloch, Natalie N, Omondi, Fredrick H, Jenabian, Mohammad-Ali, Dupuy, Franck P, Fromentin, Remi, Brassard, Pierre, Mehraj, Vikram, Chomont, Nicolas, Poon, Art F Y, Joy, Jeffrey B, Brumme, Zabrina L, Routy, Jean-Pierre
Published in Journal of virology (01.09.2019)
Published in Journal of virology (01.09.2019)
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Journal Article
Genetic complexity in the replication-competent latent HIV reservoir increases with untreated infection duration in infected youth
Brumme, Zabrina L, Sudderuddin, Hanwei, Ziemniak, Carrie, Luzuriaga, Katherine, Jones, Bradley R, Joy, Jeffrey B, Cunningham, Coleen K, Greenough, Thomas, Persaud, Deborah
Published in AIDS (London) (01.02.2019)
Published in AIDS (London) (01.02.2019)
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Journal Article
Genetic Diversity, Compartmentalization, and Age of HIV Proviruses Persisting in CD4 + T Cell Subsets during Long-Term Combination Antiretroviral Therapy
Jones, Bradley R, Miller, Rachel L, Kinloch, Natalie N, Tsai, Olivia, Rigsby, Hawley, Sudderuddin, Hanwei, Shahid, Aniqa, Ganase, Bruce, Brumme, Chanson J, Harris, Marianne, Poon, Art F Y, Brockman, Mark A, Fromentin, Rémi, Chomont, Nicolas, Joy, Jeffrey B, Brumme, Zabrina L
Published in Journal of virology (14.02.2020)
Published in Journal of virology (14.02.2020)
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Journal Article
The replication-competent HIV reservoir is a genetically restricted, younger subset of the overall pool of HIV proviruses persisting during therapy, which is highly genetically stable over time
Shahid, Aniqa, MacLennan, Signe, Jones, Bradley R, Sudderuddin, Hanwei, Dang, Zhong, Cobarrubias, Kyle, Duncan, Maggie C, Kinloch, Natalie N, Dapp, Michael J, Archin, Nancie M, Fischl, Margaret A, Ofotokun, Igho, Adimora, Adaora, Gange, Stephen, Aouizerat, Bradley, Kuniholm, Mark H, Kassaye, Seble, Mullins, James I, Goldstein, Harris, Joy, Jeffrey B, Anastos, Kathryn, Brumme, Zabrina L
Published in Journal of virology (12.01.2024)
Published in Journal of virology (12.01.2024)
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Journal Article
Continuous Liquid Vapor Reactions Part 2: Asymmetric Hydroformylation with Rhodium-Bisdiazaphos Catalysts in a Vertical Pipes-in-Series Reactor
Abrams, M. Leigh, Buser, Jonas Y, Calvin, Joel R, Johnson, Martin D, Jones, Bradley R, Lambertus, Gordon, Landis, Clark R, Martinelli, Joseph R, May, Scott A, McFarland, Adam D, Stout, James R
Published in Organic process research & development (20.05.2016)
Published in Organic process research & development (20.05.2016)
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