Genetic history of an archaic hominin group from Denisova Cave in Siberia
Reich, David, Viola, Bence, Pääbo, Svante, Green, Richard E, Kircher, Martin, Krause, Johannes, Patterson, Nick, Durand, Eric Y, Briggs, Adrian W, Stenzel, Udo, Johnson, Philip L. F, Maricic, Tomislav, Good, Jeffrey M, Marques-Bonet, Tomas, Alkan, Can, Fu, Qiaomei, Mallick, Swapan, Li, Heng, Meyer, Matthias, Eichler, Evan E, Stoneking, Mark, Richards, Michael, Talamo, Sahra, Shunkov, Michael V, Derevianko, Anatoli P, Hublin, Jean-Jacques, Kelso, Janet, Slatkin, Montgomery
Published in Nature (London) (23.12.2010)
Published in Nature (London) (23.12.2010)
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Journal Article
Dynamics and turnover of memory CD8 T cell responses following yellow fever vaccination
Zarnitsyna, Veronika I, Akondy, Rama S, Ahmed, Hasan, McGuire, Donald J, Zarnitsyn, Vladimir G, Moore, Mia, Johnson, Philip L F, Ahmed, Rafi, Li, Kelvin W, Hellerstein, Marc K, Antia, Rustom
Published in PLoS computational biology (01.10.2021)
Published in PLoS computational biology (01.10.2021)
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Journal Article
Patterns of Damage in Genomic DNA Sequences from a Neandertal
Briggs, Adrian W., Stenzel, Udo, Johnson, Philip L. F., Green, Richard E., Kelso, Janet, Prüfer, Kay, Meyer, Matthias, Krause, Johannes, Ronan, Michael T., Lachmann, Michael, Pääbo, Svante
Published in Proceedings of the National Academy of Sciences - PNAS (11.09.2007)
Published in Proceedings of the National Academy of Sciences - PNAS (11.09.2007)
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Journal Article
Targeted Investigation of the Neandertal Genome by Array-Based Sequence Capture
Burbano, Hernán A, Hodges, Emily, Green, Richard E, Briggs, Adrian W, Krause, Johannes, Meyer, Matthias, Good, Jeffrey M, Maricic, Tomislav, Johnson, Philip L.F, Xuan, Zhenyu, Rooks, Michelle, Bhattacharjee, Arindam, Brizuela, Leonardo, Albert, Frank W, de la Rasilla, Marco, Fortea, Javier, Rosas, Antonio, Lachmann, Michael, Hannon, Gregory J, Pääbo, Svante
Published in Science (American Association for the Advancement of Science) (07.05.2010)
Published in Science (American Association for the Advancement of Science) (07.05.2010)
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Journal Article
Initial viral load determines the magnitude of the human CD8 T cell response to yellow fever vaccination
Akondy, Rama S., Johnson, Philip L. F., Nakaya, Helder I., Edupuganti, Srilatha, Mulligan, Mark J., Lawson, Benton, Miller, Joseph D., Pulendran, Bali, Antia, Rustom, Ahmed, Rafi
Published in Proceedings of the National Academy of Sciences - PNAS (10.03.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (10.03.2015)
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mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters
Jónsson, Hákon, Ginolhac, Aurélien, Schubert, Mikkel, Johnson, Philip L F, Orlando, Ludovic
Published in Bioinformatics (01.07.2013)
Published in Bioinformatics (01.07.2013)
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Journal Article
High Incidence of Tuberculosis among HIV-Infected Infants: Evidence from a South African Population-Based Study Highlights the Need for Improved Tuberculosis Control Strategies
Hesseling, A. C., Cotton, M. F., Jennings, T., Whitelaw, A., Johnson, L. F., Eley, B., Roux, P., Godfrey-Faussett, P., Schaaf, H. S.
Published in Clinical infectious diseases (01.01.2009)
Published in Clinical infectious diseases (01.01.2009)
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Journal Article
Genome-wide ancestry of 17th-century enslaved Africans from the Caribbean
Schroeder, Hannes, Ávila-Arcos, María C., Malaspinas, Anna-Sapfo, Poznik, G. David, Sandoval-Velasco, Marcela, Carpenter, Meredith L., Moreno-Mayar, José Víctor, Sikora, Martin, Johnson, Philip L. F., Allentoft, Morten Erik, Samaniego, José Alfredo, Haviser, Jay B., Dee, Michael W., Stafford, Thomas W., Salas, Antonio, Orlando, Ludovic, Willerslev, Eske, Bustamante, Carlos D., Gilbert, M. Thomas P.
Published in Proceedings of the National Academy of Sciences - PNAS (24.03.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (24.03.2015)
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Exploring the functional composition of the human microbiome using a hand-curated microbial trait database
Weissman, Jake L, Dogra, Sonia, Javadi, Keyan, Bolten, Samantha, Flint, Rachel, Davati, Cyrus, Beattie, Jess, Dixit, Keshav, Peesay, Tejasvi, Awan, Shehar, Thielen, Peter, Breitwieser, Florian, Johnson, Philip L. F, Karig, David, Fagan, William F, Bewick, Sharon
Published in BMC bioinformatics (07.06.2021)
Published in BMC bioinformatics (07.06.2021)
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Journal Article
Noninvasive Discrimination of Rejection in Cardiac Allograft Recipients Using Gene Expression Profiling
Deng, M. C., Eisen, H. J., Mehra, M. R., Billingham, M., Marboe, C. C., Berry, G., Kobashigawa, J., Johnson, F. L., Starling, R. C., Murali, S., Pauly, D. F., Baron, H., Wohlgemuth, J. G., Woodward, R. N., Klingler, T. M., Walther, D., Lal, P. G., Rosenberg, S., Hunt, S.
Published in American journal of transplantation (01.01.2006)
Published in American journal of transplantation (01.01.2006)
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Journal Article
Disseminated bacille Calmette―Guérin disease in HIV-infected South African infants
HESSELING, A. C, JOHNSON, L. F, BEYERS, N, GODFREY-FAUSSETT, P, JASPAN, H, COTTON, M. F, WHITELAW, A, SCHAAF, H. S, FINE, Pem, ELEY, B. S, MARAIS, B. J, NUTTALL, J
Published in Bulletin of the World Health Organization (01.07.2009)
Published in Bulletin of the World Health Organization (01.07.2009)
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Journal Article
Vaccination Alters the Balance between Protective Immunity, Exhaustion, Escape, and Death in Chronic Infections
JOHNSON, Philip L. F, KOCHIN, Beth F, MCAFEE, Megan S, STROMNES, Ingunn M, REGOES, Roland R, AHMED, Rafi, BLATTMAN, Joseph N, ANTIA, Rustom
Published in Journal of Virology (01.06.2011)
Published in Journal of Virology (01.06.2011)
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Journal Article
Imaging from an unmanned aerial vehicle: agricultural surveillance and decision support
Herwitz, S.R, Johnson, L.F, Dunagan, S.E, Higgins, R.G, Sullivan, D.V, Zheng, J, Lobitz, B.M, Leung, J.G, Gallmeyer, B.A, Aoyagi, M, Slye, R.E, Brass, J.A
Published in Computers and electronics in agriculture (01.07.2004)
Published in Computers and electronics in agriculture (01.07.2004)
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Journal Article
Accounting for Bias from Sequencing Error in Population Genetic Estimates
Johnson, Philip L. F., Slatkin, Montgomery
Published in Molecular biology and evolution (01.01.2008)
Published in Molecular biology and evolution (01.01.2008)
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Journal Article
Review article: sleep and its relationship to gastro‐oesophageal reflux
Orr, W. C., Heading, R., Johnson, L. F., Kryger, M.
Published in Alimentary pharmacology & therapeutics (01.12.2004)
Published in Alimentary pharmacology & therapeutics (01.12.2004)
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Journal Article
Peripheral selection rather than thymic involution explains sudden contraction in naive CD4 T-cell diversity with age
Johnson, Philip L. F., Yates, Andrew J., Goronzy, Jörg J., Antia, Rustom
Published in Proceedings of the National Academy of Sciences - PNAS (26.12.2012)
Published in Proceedings of the National Academy of Sciences - PNAS (26.12.2012)
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Journal Article
Mapping vineyard leaf area with multispectral satellite imagery
Johnson, L.F, Roczen, D.E, Youkhana, S.K, Nemani, R.R, Bosch, D.F
Published in Computers and electronics in agriculture (2003)
Published in Computers and electronics in agriculture (2003)
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Journal Article
Draft Sequence of the Neandertal Genome
Green, Richard E, Krause, Johannes, Briggs, Adrian W, Maricic, Tomislav, Stenzel, Udo, Kircher, Martin, Patterson, Nick, Li, Heng, Zhai, Weiwei, Fritz, Markus Hsi-Yang, Hansen, Nancy F, Durand, Eric Y, Malaspinas, Anna-Sapfo, Jensen, Jeffrey D, Marques-Bonet, Tomas, Alkan, Can, Prüfer, Kay, Meyer, Matthias, Burbano, Hernán A, Good, Jeffrey M, Schultz, Rigo, Aximu-Petri, Ayinuer, Butthof, Anne, Höber, Barbara, Höffner, Barbara, Siegemund, Madlen, Weihmann, Antje, Nusbaum, Chad, Lander, Eric S, Russ, Carsten, Novod, Nathaniel, Affourtit, Jason, Egholm, Michael, Verna, Christine, Rudan, Pavao, Brajkovic, Dejana, Kucan, Željko, Gušic, Ivan, Doronichev, Vladimir B, Golovanova, Liubov V, Lalueza-Fox, Carles, de la Rasilla, Marco, Fortea, Javier, Rosas, Antonio, Schmitz, Ralf W, Johnson, Philip L.F, Eichler, Evan E, Falush, Daniel, Birney, Ewan, Mullikin, James C, Slatkin, Montgomery, Nielsen, Rasmus, Kelso, Janet, Lachmann, Michael, Reich, David, Pääbo, Svante
Published in Science (American Association for the Advancement of Science) (07.05.2010)
Published in Science (American Association for the Advancement of Science) (07.05.2010)
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