Meta- and Orthogonal Integration of Influenza “OMICs” Data Defines a Role for UBR4 in Virus Budding
Tripathi, Shashank, Pohl, Marie O., Zhou, Yingyao, Rodriguez-Frandsen, Ariel, Wang, Guojun, Stein, David A., Moulton, Hong M., DeJesus, Paul, Che, Jianwei, Mulder, Lubbertus C.F., Yángüez, Emilio, Andenmatten, Dario, Pache, Lars, Manicassamy, Balaji, Albrecht, Randy A., Gonzalez, Maria G., Nguyen, Quy, Brass, Abraham, Elledge, Stephen, White, Michael, Shapira, Sagi, Hacohen, Nir, Karlas, Alexander, Meyer, Thomas F., Shales, Michael, Gatorano, Andre, Johnson, Jeffrey R., Jang, Gwen, Johnson, Tasha, Verschueren, Erik, Sanders, Doug, Krogan, Nevan, Shaw, Megan, König, Renate, Stertz, Silke, García-Sastre, Adolfo, Chanda, Sumit K.
Published in Cell host & microbe (09.12.2015)
Published in Cell host & microbe (09.12.2015)
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Global Mapping of Herpesvirus-Host Protein Complexes Reveals a Transcription Strategy for Late Genes
Davis, Zoe H., Verschueren, Erik, Jang, Gwendolyn M., Kleffman, Kevin, Johnson, Jeffrey R., Park, Jimin, Von Dollen, John, Maher, M. Cyrus, Johnson, Tasha, Newton, William, Jäger, Stefanie, Shales, Michael, Horner, Julie, Hernandez, Ryan D., Krogan, Nevan J., Glaunsinger, Britt A.
Published in Molecular cell (22.01.2015)
Published in Molecular cell (22.01.2015)
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Affinity purification–mass spectrometry and network analysis to understand protein-protein interactions
Morris, John H, Knudsen, Giselle M, Verschueren, Erik, Johnson, Jeffrey R, Cimermancic, Peter, Greninger, Alexander L, Pico, Alexander R
Published in Nature protocols (01.11.2014)
Published in Nature protocols (01.11.2014)
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NF-κB-Activating Complex Engaged in Response to EGFR Oncogene Inhibition Drives Tumor Cell Survival and Residual Disease in Lung Cancer
Blakely, Collin M., Pazarentzos, Evangelos, Olivas, Victor, Asthana, Saurabh, Yan, Jenny Jiacheng, Tan, Irena, Hrustanovic, Gorjan, Chan, Elton, Lin, Luping, Neel, Dana S., Newton, William, Bobb, Kathryn L., Fouts, Timothy R., Meshulam, Jeffrey, Gubens, Matthew A., Jablons, David M., Johnson, Jeffrey R., Bandyopadhyay, Sourav, Krogan, Nevan J., Bivona, Trever G.
Published in Cell reports (Cambridge) (07.04.2015)
Published in Cell reports (Cambridge) (07.04.2015)
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A Combined Proteomics/Genomics Approach Links Hepatitis C Virus Infection with Nonsense-Mediated mRNA Decay
Ramage, Holly R., Kumar, G. Renuka, Verschueren, Erik, Johnson, Jeffrey R., Von Dollen, John, Johnson, Tasha, Newton, Billy, Shah, Priya, Horner, Julie, Krogan, Nevan J., Ott, Melanie
Published in Molecular cell (22.01.2015)
Published in Molecular cell (22.01.2015)
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Neuronal Apolipoprotein E4 Expression Results in Proteome-Wide Alterations and Compromises Bioenergetic Capacity by Disrupting Mitochondrial Function
Orr, Adam L, Kim, Chaeyoung, Jimenez-Morales, David, Newton, Billy W, Johnson, Jeffrey R, Krogan, Nevan J, Swaney, Danielle L, Mahley, Robert W
Published in Journal of Alzheimer's disease (01.01.2019)
Published in Journal of Alzheimer's disease (01.01.2019)
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Global Mapping of the Inc-Human Interactome Reveals that Retromer Restricts Chlamydia Infection
Mirrashidi, Kathleen M., Elwell, Cherilyn A., Verschueren, Erik, Johnson, Jeffrey R., Frando, Andrew, Von Dollen, John, Rosenberg, Oren, Gulbahce, Natali, Jang, Gwendolyn, Johnson, Tasha, Jäger, Stefanie, Gopalakrishnan, Anusha M., Sherry, Jessica, Dunn, Joe Dan, Olive, Andrew, Penn, Bennett, Shales, Michael, Cox, Jeffery S., Starnbach, Michael N., Derre, Isabelle, Valdivia, Raphael, Krogan, Nevan J., Engel, Joanne
Published in Cell host & microbe (08.07.2015)
Published in Cell host & microbe (08.07.2015)
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An Mtb-Human Protein-Protein Interaction Map Identifies a Switch between Host Antiviral and Antibacterial Responses
Penn, Bennett H., Netter, Zoe, Johnson, Jeffrey R., Von Dollen, John, Jang, Gwendolyn M., Johnson, Tasha, Ohol, Yamini M., Maher, Cyrus, Bell, Samantha L., Geiger, Kristina, Golovkine, Guillaume, Du, Xiaotang, Choi, Alex, Parry, Trevor, Mohapatra, Bhopal C., Storck, Matthew D., Band, Hamid, Chen, Chen, Jäger, Stefanie, Shales, Michael, Portnoy, Dan A., Hernandez, Ryan, Coscoy, Laurent, Cox, Jeffery S., Krogan, Nevan J.
Published in Molecular cell (16.08.2018)
Published in Molecular cell (16.08.2018)
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Pharmacological dimerization and activation of the exchange factor eIF2B antagonizes the integrated stress response
Sidrauski, Carmela, Tsai, Jordan C, Kampmann, Martin, Hearn, Brian R, Vedantham, Punitha, Jaishankar, Priyadarshini, Sokabe, Masaaki, Mendez, Aaron S, Newton, Billy W, Tang, Edward L, Verschueren, Erik, Johnson, Jeffrey R, Krogan, Nevan J, Fraser, Christopher S, Weissman, Jonathan S, Renslo, Adam R, Walter, Peter
Published in eLife (15.04.2015)
Published in eLife (15.04.2015)
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Chaperone-mediated reflux of secretory proteins to the cytosol during endoplasmic reticulum stress
Igbaria, Aeid, Merksamer, Philip I., Trusina, Ala, Tilahun, Firehiwot, Johnson, Jeffrey R., Brandman, Onn, Krogan, Nevan J., Weissman, Jonathan S., Papa, Feroz R.
Published in Proceedings of the National Academy of Sciences - PNAS (04.06.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (04.06.2019)
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Dynamic BAF chromatin remodeling complex subunit inclusion promotes temporally distinct gene expression programs in cardiogenesis
Hota, Swetansu K, Johnson, Jeffrey R, Verschueren, Erik, Thomas, Reuben, Blotnick, Aaron M, Zhu, Yiwen, Sun, Xin, Pennacchio, Len A, Krogan, Nevan J, Bruneau, Benoit G
Published in Development (Cambridge) (05.07.2019)
Published in Development (Cambridge) (05.07.2019)
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SUMO is a pervasive regulator of meiosis
Bhagwat, Nikhil R, Owens, Shannon N, Ito, Masaru, Boinapalli, Jay V, Poa, Philip, Ditzel, Alexander, Kopparapu, Srujan, Mahalawat, Meghan, Davies, Owen Richard, Collins, Sean R, Johnson, Jeffrey R, Krogan, Nevan J, Hunter, Neil
Published in eLife (27.01.2021)
Published in eLife (27.01.2021)
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SMYD2-Mediated Histone Methylation Contributes to HIV-1 Latency
Boehm, Daniela, Jeng, Mark, Camus, Gregory, Gramatica, Andrea, Schwarzer, Roland, Johnson, Jeffrey R., Hull, Philip A., Montano, Mauricio, Sakane, Naoki, Pagans, Sara, Godin, Robert, Deeks, Steven G., Krogan, Nevan J., Greene, Warner C., Ott, Melanie
Published in Cell host & microbe (10.05.2017)
Published in Cell host & microbe (10.05.2017)
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Multiple Routes to Oncogenesis Are Promoted by the Human Papillomavirus-Host Protein Network
Eckhardt, Manon, Zhang, Wei, Gross, Andrew M, Von Dollen, John, Johnson, Jeffrey R, Franks-Skiba, Kathleen E, Swaney, Danielle L, Johnson, Tasha L, Jang, Gwendolyn M, Shah, Priya S, Brand, Toni M, Archambault, Jacques, Kreisberg, Jason F, Grandis, Jennifer R, Ideker, Trey, Krogan, Nevan J
Published in Cancer discovery (01.11.2018)
Published in Cancer discovery (01.11.2018)
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Centriolar satellites assemble centrosomal microcephaly proteins to recruit CDK2 and promote centriole duplication
Kodani, Andrew, Yu, Timothy W, Johnson, Jeffrey R, Jayaraman, Divya, Johnson, Tasha L, Al-Gazali, Lihadh, Sztriha, Lāszló, Partlow, Jennifer N, Kim, Hanjun, Krup, Alexis L, Dammermann, Alexander, Krogan, Nevan J, Walsh, Christopher A, Reiter, Jeremy F
Published in eLife (22.08.2015)
Published in eLife (22.08.2015)
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AFF1 is a ubiquitous P-TEFb partner to enable Tat extraction of P-TEFb from 7SK snRNP and formation of SECs for HIV transactivation
Lu, Huasong, Li, Zichong, Xue, Yuhua, Schulze-Gahmen, Ursula, Johnson, Jeffrey R, Krogan, Nevan J, Alber, Tom, Zhou, Qiang
Published in Proceedings of the National Academy of Sciences - PNAS (07.01.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (07.01.2014)
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Two Accessory Proteins Govern MmpL3 Mycolic Acid Transport in Mycobacteria
Fay, Allison, Czudnochowski, Nadine, Rock, Jeremy M, Johnson, Jeffrey R, Krogan, Nevan J, Rosenberg, Oren, Glickman, Michael S
Published in mBio (25.06.2019)
Published in mBio (25.06.2019)
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The RNA helicase DHX16 recognizes specific viral RNA to trigger RIG-I-dependent innate antiviral immunity
Hage, Adam, Bharaj, Preeti, van Tol, Sarah, Giraldo, Maria I., Gonzalez-Orozco, Maria, Valerdi, Karl M., Warren, Abbey N., Aguilera-Aguirre, Leopoldo, Xie, Xuping, Widen, Steven G., Moulton, Hong M., Lee, Benhur, Johnson, Jeffrey R., Krogan, Nevan J., García-Sastre, Adolfo, Shi, Pei-Yong, Freiberg, Alexander N., Rajsbaum, Ricardo
Published in Cell reports (Cambridge) (08.03.2022)
Published in Cell reports (Cambridge) (08.03.2022)
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Chlamydia interfere with an interaction between the mannose-6-phosphate receptor and sorting nexins to counteract host restriction
Elwell, Cherilyn A, Czudnochowski, Nadine, von Dollen, John, Johnson, Jeffrey R, Nakagawa, Rachel, Mirrashidi, Kathleen, Krogan, Nevan J, Engel, Joanne N, Rosenberg, Oren S
Published in eLife (02.03.2017)
Published in eLife (02.03.2017)
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