Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs
Cole, Christian, Sobala, Andrew, Lu, Cheng, Thatcher, Shawn R, Bowman, Andrew, Brown, John W S, Green, Pamela J, Barton, Geoffrey J, Hutvagner, Gyorgy
Published in RNA (Cambridge) (01.12.2009)
Published in RNA (Cambridge) (01.12.2009)
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Nonsense-Mediated RNA Decay Factor UPF1 Is Critical for Posttranscriptional and Translational Gene Regulation in Arabidopsis
Raxwal, Vivek K., Simpson, Craig G., Gloggnitzer, Jiradet, Entinze, Juan Carlos, Guo, Wenbin, Zhang, Runxuan, Brown, John W.S., Riha, Karel
Published in The Plant cell (01.09.2020)
Published in The Plant cell (01.09.2020)
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BaRTv2: a highly resolved barley reference transcriptome for accurate transcript‐specific RNA‐seq quantification
Coulter, Max, Entizne, Juan Carlos, Guo, Wenbin, Bayer, Micha, Wonneberger, Ronja, Milne, Linda, Schreiber, Miriam, Haaning, Allison, Muehlbauer, Gary J., McCallum, Nicola, Fuller, John, Simpson, Craig, Stein, Nils, Brown, John W. S., Waugh, Robbie, Zhang, Runxuan
Published in The Plant journal : for cell and molecular biology (01.08.2022)
Published in The Plant journal : for cell and molecular biology (01.08.2022)
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Journal Article
TSIS: an R package to infer alternative splicing isoform switches for time-series data
Guo, Wenbin, Calixto, Cristiane P G, Brown, John W S, Zhang, Runxuan
Published in Bioinformatics (Oxford, England) (15.10.2017)
Published in Bioinformatics (Oxford, England) (15.10.2017)
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Journal Article
REVEILLE2 thermosensitive splicing: a molecular basis for the integration of nocturnal temperature information by the Arabidopsis circadian clock
James, Allan B., Sharples, Chantal, Laird, Janet, Armstrong, Emily May, Guo, Wenbin, Tzioutziou, Nikoleta, Zhang, Runxuan, Brown, John W. S., Nimmo, Hugh G., Jones, Matthew A.
Published in The New phytologist (01.01.2024)
Published in The New phytologist (01.01.2024)
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Bioavailability of polycyclic aromatic hydrocarbons from buried shoreline oil residues thirteen years after the Exxon Valdez oil spill: A multispecies assessment
Neff, Jerry M., Bence, A. Edward, Parker, Keith R., Page, David S., Brown, John S., Boehm, Paul D.
Published in Environmental toxicology and chemistry (01.04.2006)
Published in Environmental toxicology and chemistry (01.04.2006)
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Journal Article
The SERRATE protein is involved in alternative splicing in Arabidopsis thaliana
Raczynska, Katarzyna Dorota, Stepien, Agata, Kierzkowski, Daniel, Kalak, Malgorzata, Bajczyk, Mateusz, McNicol, Jim, Simpson, Craig G, Szweykowska-Kulinska, Zofia, Brown, John W S, Jarmolowski, Artur
Published in Nucleic acids research (01.01.2014)
Published in Nucleic acids research (01.01.2014)
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Journal Article
The SERRATE protein is involved in alternative splicing in Arabidopsis thaliana
Raczynska, Katarzyna Dorota, Stepien, Agata, Kierzkowski, Daniel, Kalak, Malgorzata, Bajczyk, Mateusz, McNicol, Jim, Simpson, Craig G, Szweykowska-Kulinska, Zofia, Brown, John W S, Jarmolowski, Artur
Published in Nucleic acids research (20.02.2020)
Published in Nucleic acids research (20.02.2020)
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Journal Article
Experimental Design for Time-Series RNA-Seq Analysis of Gene Expression and Alternative Splicing
Tzioutziou, Nikoleta A, James, Allan B, Guo, Wenbin, Calixto, Cristiane P G, Zhang, Runxuan, Nimmo, Hugh G, Brown, John W S
Published in Methods in molecular biology (Clifton, N.J.) (2022)
Published in Methods in molecular biology (Clifton, N.J.) (2022)
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Journal Article
Intronic noncoding RNAs and splicing
Brown, John W.S., Marshall, David F., Echeverria, Manuel
Published in Trends in plant science (01.07.2008)
Published in Trends in plant science (01.07.2008)
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Journal Article
Polycyclic aromatic hydrocarbon levels in mussels from prince william sound, ALASKA, USA, document the return to baseline conditions
Boehm, Paul D., Page, David S., Brown, John S., Neff, Jerry M., Burns, William A.
Published in Environmental toxicology and chemistry (01.12.2004)
Published in Environmental toxicology and chemistry (01.12.2004)
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Journal Article
Aberrant mRNA Transcripts and the Nonsense-Mediated Decay Proteins UPF2 and UPF3 Are Enriched in the Arabidopsis Nucleolus
Kim, Sang Hyon, Koroleva, Olga A, Lewandowska, Dominika, Pendle, Ali F, Clark, Gillian P, Simpson, Craig G, Shaw, Peter J, Brown, John W.S
Published in The Plant cell (01.07.2009)
Published in The Plant cell (01.07.2009)
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A hierarchical approach measures the aerial extent and concentration levels of PAH-contaminated shoreline sediments at historic industrial sites in Prince William Sound, Alaska
Page, David S., Brown, John S., Boehm, Paul D., Bence, A. Edward, Neff, Jerry M.
Published in Marine pollution bulletin (01.04.2006)
Published in Marine pollution bulletin (01.04.2006)
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