EDISA: extracting biclusters from multiple time-series of gene expression profiles
Supper, Jochen, Strauch, Martin, Wanke, Dierk, Harter, Klaus, Zell, Andreas
Published in BMC bioinformatics (12.09.2007)
Published in BMC bioinformatics (12.09.2007)
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Journal Article
Predicting DNA-binding specificities of eukaryotic transcription factors
Schröder, Adrian, Eichner, Johannes, Supper, Jochen, Eichner, Jonas, Wanke, Dierk, Henneges, Carsten, Zell, Andreas
Published in PloS one (30.11.2010)
Published in PloS one (30.11.2010)
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Journal Article
Optimal selection of epitopes for TXP-immunoaffinity mass spectrometry
Planatscher, Hannes, Supper, Jochen, Poetz, Oliver, Stoll, Dieter, Joos, Thomas, Templin, Markus F, Zell, Andreas
Published in Algorithms for molecular biology (25.06.2010)
Published in Algorithms for molecular biology (25.06.2010)
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Journal Article
A Two-Step Clustering for 3-D Gene Expression Data Reveals the Main Features of the Arabidopsis Stress Response
Strauch, Martin, Supper, Jochen, Spieth, Christian, Wanke, Dierk, Kilian, Joachim, Harter, Klaus, Zell, Andreas
Published in Journal of integrative bioinformatics (01.03.2007)
Published in Journal of integrative bioinformatics (01.03.2007)
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Journal Article
An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge
Brownstein, Catherine A, Beggs, Alan H, Homer, Nils, Merriman, Barry, Yu, Timothy W, Flannery, Katherine C, DeChene, Elizabeth T, Towne, Meghan C, Savage, Sarah K, Price, Emily N, Holm, Ingrid A, Luquette, Lovelace J, Lyon, Elaine, Majzoub, Joseph, Neupert, Peter, McCallie, Jr, David, Szolovits, Peter, Willard, Huntington F, Mendelsohn, Nancy J, Temme, Renee, Finkel, Richard S, Yum, Sabrina W, Medne, Livija, Sunyaev, Shamil R, Adzhubey, Ivan, Cassa, Christopher A, de Bakker, Paul I W, Duzkale, Hatice, Dworzyński, Piotr, Fairbrother, William, Francioli, Laurent, Funke, Birgit H, Giovanni, Monica A, Handsaker, Robert E, Lage, Kasper, Lebo, Matthew S, Lek, Monkol, Leshchiner, Ignaty, MacArthur, Daniel G, McLaughlin, Heather M, Murray, Michael F, Pers, Tune H, Polak, Paz P, Raychaudhuri, Soumya, Rehm, Heidi L, Soemedi, Rachel, Stitziel, Nathan O, Vestecka, Sara, Supper, Jochen, Gugenmus, Claudia, Klocke, Bernward, Hahn, Alexander, Schubach, Max, Menzel, Mortiz, Biskup, Saskia, Freisinger, Peter, Deng, Mario, Braun, Martin, Perner, Sven, Smith, Richard J H, Andorf, Janeen L, Huang, Jian, Ryckman, Kelli, Sheffield, Val C, Stone, Edwin M, Bair, Thomas, Black-Ziegelbein, E Ann, Braun, Terry A, Darbro, Benjamin, DeLuca, Adam P, Kolbe, Diana L, Scheetz, Todd E, Shearer, Aiden E, Sompallae, Rama, Wang, Kai, Bassuk, Alexander G, Edens, Erik, Mathews, Katherine, Moore, Steven A, Shchelochkov, Oleg A, Trapane, Pamela, Bossler, Aaron, Campbell, Colleen A, Heusel, Jonathan W, Kwitek, Anne, Maga, Tara, Panzer, Karin, Wassink, Thomas, Van Daele, Douglas, Azaiez, Hela, Booth, Kevin, Meyer, Nic, Segal, Michael M, Williams, Marc S, Tromp, Gerard, White, Peter, Corsmeier, Donald, Fitzgerald-Butt, Sara, Herman, Gail, Lamb-Thrush, Devon
Published in Genome Biology (25.03.2014)
Published in Genome Biology (25.03.2014)
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Journal Article
Detecting and visualizing gene fusions
Supper, Jochen, Gugenmus, Claudia, Wollnik, Johannes, Drueke, Tanja, Scherf, Matthias, Hahn, Alexander, Grote, Korbinian, Bretschneider, Nancy, Klocke, Bernward, Zinser, Christian, Cartharius, Kerstin, Seifert, Martin
Published in Methods (San Diego, Calif.) (01.01.2013)
Published in Methods (San Diego, Calif.) (01.01.2013)
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Journal Article
SBMLsqueezer: a CellDesigner plug-in to generate kinetic rate equations for biochemical networks
Dräger, Andreas, Hassis, Nadine, Supper, Jochen, Schröder, Adrian, Zell, Andreas
Published in BMC systems biology (30.04.2008)
Published in BMC systems biology (30.04.2008)
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Journal Article
Modeling metabolic networks in C. glutamicum: a comparison of rate laws in combination with various parameter optimization strategies
Dräger, Andreas, Kronfeld, Marcel, Ziller, Michael J, Supper, Jochen, Planatscher, Hannes, Magnus, Jørgen B, Oldiges, Marco, Kohlbacher, Oliver, Zell, Andreas
Published in BMC systems biology (14.01.2009)
Published in BMC systems biology (14.01.2009)
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Journal Article
BowTieBuilder: modeling signal transduction pathways
Supper, Jochen, Spangenberg, Lucía, Planatscher, Hannes, Dräger, Andreas, Schröder, Adrian, Zell, Andreas
Published in BMC systems biology (30.06.2009)
Published in BMC systems biology (30.06.2009)
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Journal Article
Analysis of MHC-Peptide Binding Using Amino Acid Property-Based Decision Rules
Supper, Jochen, Dönnes, Pierre, Kohlbacher, Oliver
Published in Lecture notes in computer science (2005)
Published in Lecture notes in computer science (2005)
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Book Chapter
Conference Proceeding
Biomarkers and molecular tumour classification for non-genotoxic carcinogenesis
Moggs, Jonathan, Wolf, Roland, Friedberg, Thomas, Stewart, Neil, Elcombe, Cliff, Plummer, Simon, Grasl-Kraupp, Bettina, Schulte-Hermann, Rolf, Gerner, Christopher, Meehan, Richard, Schwarz, Michael, Zell, Andreas, Schroeder, Adrian, Supper, Jochen, Pichler, Bernd, Templin, Markus, Maurel, Patrick, Daujat-Chavanieu, Martine, Pacquet, Jean-Luc, Kalkuhl, Arno, Matheis, Katja, Ahr, Hans-Juergen, Dhalluin, Stephane, Ostenfeldt, Nina
Published in Toxicology letters (13.09.2009)
Published in Toxicology letters (13.09.2009)
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Journal Article
Packaging design challenges of the IBM System z10 Enterprise Class server
Winkel, T-M, Harrer, H, Kaller, D, Supper, J, Dreps, D M, Christian, K L, Cosmadelis, D, Zhou, T, Strach, T, Ludwig, J, Edwards, D L
Published in IBM journal of research and development (01.01.2009)
Published in IBM journal of research and development (01.01.2009)
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Journal Article
Mitigating power noise using a current supply
Supper, Jochen, Schmidt, Martin Bernhard, Harrer, Hubert, Strach, Thomas
Year of Publication 29.10.2019
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Year of Publication 29.10.2019
Patent
A Two-Step Clustering for 3-D Gene Expression Data Reveals the Main Features of the Arabidopsis Stress Response
Strauch, Martin, Supper, Jochen, Spieth, Christian, Wanke, Dierk, Kilian, Joachim, Harter, Klaus, Zell, Andreas
Published in Journal of integrative bioinformatics (01.03.2007)
Published in Journal of integrative bioinformatics (01.03.2007)
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Journal Article
Comparing various evolutionary algorithms on the parameter optimization of the valine and leucine biosynthesis in corynebacterium glutamicum
Drager, A., Supper, J., Planatscher, H., Magnus, J.B., Oldiges, M., Zell, A.
Published in 2007 IEEE Congress on Evolutionary Computation (01.09.2007)
Published in 2007 IEEE Congress on Evolutionary Computation (01.09.2007)
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Conference Proceeding
Benchmarking evolutionary algorithms on convenience kinetics models of the valine and leucine biosynthesis in C. glutamicum
Drager, A., Kronfeld, M., Supper, J., Planatscher, H., Magnus, J.B., Oldiges, M., Zell, A.
Published in 2007 IEEE Congress on Evolutionary Computation (01.09.2007)
Published in 2007 IEEE Congress on Evolutionary Computation (01.09.2007)
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Conference Proceeding