Subtle changes in chromatin loop contact propensity are associated with differential gene regulation and expression
Greenwald, William W., Li, He, Benaglio, Paola, Jakubosky, David, Matsui, Hiroko, Schmitt, Anthony, Selvaraj, Siddarth, D’Antonio, Matteo, D’Antonio-Chronowska, Agnieszka, Smith, Erin N., Frazer, Kelly A.
Published in Nature communications (05.03.2019)
Published in Nature communications (05.03.2019)
Get full text
Journal Article
Large-Scale Profiling Reveals the Influence of Genetic Variation on Gene Expression in Human Induced Pluripotent Stem Cells
DeBoever, Christopher, Li, He, Jakubosky, David, Benaglio, Paola, Reyna, Joaquin, Olson, Katrina M., Huang, Hui, Biggs, William, Sandoval, Efren, D’Antonio, Matteo, Jepsen, Kristen, Matsui, Hiroko, Arias, Angelo, Ren, Bing, Nariai, Naoki, Smith, Erin N., D’Antonio-Chronowska, Agnieszka, Farley, Emma K., Frazer, Kelly A.
Published in Cell stem cell (06.04.2017)
Published in Cell stem cell (06.04.2017)
Get full text
Journal Article
Identification of rare and common regulatory variants in pluripotent cells using population-scale transcriptomics
Bonder, Marc Jan, Smail, Craig, Gloudemans, Michael J., Frésard, Laure, Jakubosky, David, D’Antonio, Matteo, Li, Xin, Ferraro, Nicole M., Carcamo-Orive, Ivan, Mirauta, Bogdan, Seaton, Daniel D., Cai, Na, Vakili, Dara, Horta, Danilo, Zhao, Chunli, Zastrow, Diane B., Bonner, Devon E., Wheeler, Matthew T., Kilpinen, Helena, Knowles, Joshua W., Smith, Erin N., Frazer, Kelly A., Montgomery, Stephen B., Stegle, Oliver
Published in Nature genetics (01.03.2021)
Published in Nature genetics (01.03.2021)
Get full text
Journal Article
Properties of structural variants and short tandem repeats associated with gene expression and complex traits
Jakubosky, David, D’Antonio, Matteo, Bonder, Marc Jan, Smail, Craig, Donovan, Margaret K. R., Young Greenwald, William W., Matsui, Hiroko, D’Antonio-Chronowska, Agnieszka, Stegle, Oliver, Smith, Erin N., Montgomery, Stephen B., DeBoever, Christopher, Frazer, Kelly A.
Published in Nature communications (10.06.2020)
Published in Nature communications (10.06.2020)
Get full text
Journal Article
iPSCORE: A Resource of 222 iPSC Lines Enabling Functional Characterization of Genetic Variation across a Variety of Cell Types
Panopoulos, Athanasia D., D'Antonio, Matteo, Benaglio, Paola, Williams, Roy, Hashem, Sherin I., Schuldt, Bernhard M., DeBoever, Christopher, Arias, Angelo D., Garcia, Melvin, Nelson, Bradley C., Harismendy, Olivier, Jakubosky, David A., Donovan, Margaret K.R., Greenwald, William W., Farnam, KathyJean, Cook, Megan, Borja, Victor, Miller, Carl A., Grinstein, Jonathan D., Drees, Frauke, Okubo, Jonathan, Diffenderfer, Kenneth E., Hishida, Yuriko, Modesto, Veronica, Dargitz, Carl T., Feiring, Rachel, Zhao, Chang, Aguirre, Aitor, McGarry, Thomas J., Matsui, Hiroko, Li, He, Reyna, Joaquin, Rao, Fangwen, O'Connor, Daniel T., Yeo, Gene W., Evans, Sylvia M., Chi, Neil C., Jepsen, Kristen, Nariai, Naoki, Müller, Franz-Josef, Goldstein, Lawrence S.B., Izpisua Belmonte, Juan Carlos, Adler, Eric, Loring, Jeanne F., Berggren, W. Travis, D'Antonio-Chronowska, Agnieszka, Smith, Erin N., Frazer, Kelly A.
Published in Stem cell reports (11.04.2017)
Published in Stem cell reports (11.04.2017)
Get full text
Journal Article
Discovery and quality analysis of a comprehensive set of structural variants and short tandem repeats
Jakubosky, David, Smith, Erin N., D’Antonio, Matteo, Jan Bonder, Marc, Young Greenwald, William W., D’Antonio-Chronowska, Agnieszka, Matsui, Hiroko, Stegle, Oliver, Montgomery, Stephen B., DeBoever, Christopher, Frazer, Kelly A.
Published in Nature communications (10.06.2020)
Published in Nature communications (10.06.2020)
Get full text
Journal Article
Systematic genetic analysis of the MHC region reveals mechanistic underpinnings of HLA type associations with disease
D'Antonio, Matteo, Reyna, Joaquin, Jakubosky, David, Donovan, Margaret Kr, Bonder, Marc-Jan, Matsui, Hiroko, Stegle, Oliver, Nariai, Naoki, D'Antonio-Chronowska, Agnieszka, Frazer, Kelly A
Published in eLife (20.11.2019)
Published in eLife (20.11.2019)
Get full text
Journal Article
Oncogenic NRAS signaling differentially regulates survival and proliferation in melanoma
Kwong, Lawrence N, Costello, James C, Liu, Huiyun, Jiang, Shan, Helms, Timothy L, Langsdorf, Aliete E, Jakubosky, David, Genovese, Giannicola, Muller, Florian L, Jeong, Joseph H, Bender, Ryan P, Chu, Gerald C, Flaherty, Keith T, Wargo, Jennifer A, Collins, James J, Chin, Lynda
Published in Nature medicine (01.10.2012)
Published in Nature medicine (01.10.2012)
Get full text
Journal Article
Insights into the Mutational Burden of Human Induced Pluripotent Stem Cells from an Integrative Multi-Omics Approach
D’Antonio, Matteo, Benaglio, Paola, Jakubosky, David, Greenwald, William W., Matsui, Hiroko, Donovan, Margaret K.R., Li, He, Smith, Erin N., D’Antonio-Chronowska, Agnieszka, Frazer, Kelly A.
Published in Cell reports (Cambridge) (24.07.2018)
Published in Cell reports (Cambridge) (24.07.2018)
Get full text
Journal Article
Complex regulatory networks influence pluripotent cell state transitions in human iPSCs
Arthur, Timothy D., Nguyen, Jennifer P., D’Antonio-Chronowska, Agnieszka, Matsui, Hiroko, Silva, Nayara S., Joshua, Isaac N., Luchessi, André D., Greenwald, William W. Young, D’Antonio, Matteo, Pera, Martin F., Frazer, Kelly A.
Published in Nature communications (23.02.2024)
Published in Nature communications (23.02.2024)
Get full text
Journal Article
eQTL mapping in fetal-like pancreatic progenitor cells reveals early developmental insights into diabetes risk
Nguyen, Jennifer P., Arthur, Timothy D., Fujita, Kyohei, Salgado, Bianca M., Donovan, Margaret K. R., Matsui, Hiroko, Kim, Ji Hyun, D’Antonio-Chronowska, Agnieszka, D’Antonio, Matteo, Frazer, Kelly A.
Published in Nature communications (30.10.2023)
Published in Nature communications (30.10.2023)
Get full text
Journal Article
iPSCORE: A Resource of 222 iPSC Lines Enabling Functional Characterization of Genetic Variation across a Variety of Cell Types
Panopoulos, Athanasia D, D'Antonio, Matteo, Benaglio, Paola, Williams, Roy, Hashem, Sherin I, Schuldt, Bernhard M, DeBoever, Christopher, Arias, Angelo D, Garcia, Melvin, Nelson, Bradley C, Harismendy, Olivier, Jakubosky, David A, Donovan, Margaret K R, Greenwald, William W, Farnam, KathyJean, Cook, Megan, Borja, Victor, Miller, Carl A, Grinstein, Jonathan D, Drees, Frauke, Okubo, Jonathan, Diffenderfer, Kenneth E, Hishida, Yuriko, Modesto, Veronica, Dargitz, Carl T, Feiring, Rachel, Zhao, Chang, Aguirre, Aitor, McGarry, Thomas J, Matsui, Hiroko, Li, He, Reyna, Joaquin, Rao, Fangwen, O'Connor, Daniel T, Yeo, Gene W, Evans, Sylvia M, Chi, Neil C, Jepsen, Kristen, Nariai, Naoki, Müller, Franz-Josef, Goldstein, Lawrence S B, Izpisua Belmonte, Juan Carlos, Adler, Eric, Loring, Jeanne F, Berggren, W Travis, D'Antonio-Chronowska, Agnieszka, Smith, Erin N, Frazer, Kelly A
Published in Stem cell reports (11.04.2017)
Published in Stem cell reports (11.04.2017)
Get full text
Journal Article
Fine mapping spatiotemporal mechanisms of genetic variants underlying cardiac traits and disease
D’Antonio, Matteo, Nguyen, Jennifer P., Arthur, Timothy D., Matsui, Hiroko, D’Antonio-Chronowska, Agnieszka, Frazer, Kelly A.
Published in Nature communications (28.02.2023)
Published in Nature communications (28.02.2023)
Get full text
Journal Article
MTRES1 관련 질환 및 장애의 치료
GOTTESMAN OMRI, KLEINSTEIN SARAH, LEWIS DAVID, BRUSE SHANNON, BUSKE PAUL, JAKUBOSKY DAVID, VEKICH JOHN, CAJES BRIAN, ROZEMA DAVID
Year of Publication 13.03.2024
Get full text
Year of Publication 13.03.2024
Patent
MST1 관련 질환 및 장애의 치료
GOTTESMAN OMRI, KLEINSTEIN SARAH, LEWIS DAVID, BRUSE SHANNON, BUSKE PAUL, JAKUBOSKY DAVID, VEKICH JOHN, CAJES BRIAN, ROZEMA DAVID
Year of Publication 12.03.2024
Get full text
Year of Publication 12.03.2024
Patent
Author Correction: Fine mapping spatiotemporal mechanisms of genetic variants underlying cardiac traits and disease
D’Antonio, Matteo, Nguyen, Jennifer P., Arthur, Timothy D., Matsui, Hiroko, D’Antonio-Chronowska, Agnieszka, Frazer, Kelly A.
Published in Nature communications (20.07.2023)
Published in Nature communications (20.07.2023)
Get full text
Journal Article
Establishing the involvement of the novel gene AGBL5 in retinitis pigmentosa by whole genome sequencing
Branham, Kari, Matsui, Hiroko, Biswas, Pooja, Guru, Aditya A, Hicks, Michael, Suk, John J, Li, He, Jakubosky, David, Long, Tao, Telenti, Amalio, Nariai, Naoki, Heckenlively, John R, Frazer, Kelly A, Sieving, Paul A, Ayyagari, Radha
Published in Physiological genomics (01.12.2016)
Published in Physiological genomics (01.12.2016)
Get full text
Journal Article
Whole Genome Sequencing Revealed Mutations in Two Independent Genes as the Underlying Cause of Retinal Degeneration in an Ashkenazi Jewish Pedigree
Gustafson, Kevin, Duncan, Jacque L, Biswas, Pooja, Soto-Hermida, Angel, Matsui, Hiroko, Jakubosky, David, Suk, John, Telenti, Amalio, Frazer, Kelly A, Ayyagari, Radha
Published in Genes (24.08.2017)
Published in Genes (24.08.2017)
Get full text
Journal Article
Abstract 1110: Functional genomics reveals genetic dependencies in gastric cancer
Kulkarni, Meghana M., Gurumurthy, Sushma, Schmidt-Kittler, Oleg, Berglund, Jason, Hulton, Christopher H., Wilson, David J., Jakubosky, David, Michaud, Daniel, Jones, Robert E., Sjoblom, Nicole M., McSweeney, Russell, Zhou, Hongwei, Venkatakrishnan, Annapurna, Jensen, Karin J., Zhang, Jingxin, Mankoo, Parminder K., Pollard, Jack, Winter, Christopher, Jänne, Pasi A., Wong, Kwok-Kin, Richon, Victoria M., English, Jessie M., Bittinger, Mark A.
Published in Cancer research (Chicago, Ill.) (01.08.2015)
Published in Cancer research (Chicago, Ill.) (01.08.2015)
Get full text
Journal Article
Insights into the mutational burden of human induced pluripotent stem cells from an integrative omics approach
D’Antonio, Matteo, Benaglio, Paola, Jakubosky, David, Greenwald, William W., Matsui, Hiroko, Donovan, Margaret K. R., Li, He, Smith, Erin N., D’Antonio-Chronowska, Agnieszka, Frazer, Kelly A.
Published in Cell reports (Cambridge) (24.07.2018)
Published in Cell reports (Cambridge) (24.07.2018)
Get full text
Journal Article