Supergene origin and maintenance in Atlantic cod
Matschiner, Michael, Barth, Julia Maria Isis, Tørresen, Ole Kristian, Star, Bastiaan, Baalsrud, Helle Tessand, Brieuc, Marine Servane Ono, Pampoulie, Christophe, Bradbury, Ian, Jakobsen, Kjetill Sigurd, Jentoft, Sissel
Published in Nature ecology & evolution (01.04.2022)
Published in Nature ecology & evolution (01.04.2022)
Get full text
Journal Article
Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases
Tørresen, Ole K, Star, Bastiaan, Mier, Pablo, Andrade-Navarro, Miguel A, Bateman, Alex, Jarnot, Patryk, Gruca, Aleksandra, Grynberg, Marcin, Kajava, Andrey V, Promponas, Vasilis J, Anisimova, Maria, Jakobsen, Kjetill S, Linke, Dirk
Published in Nucleic acids research (02.12.2019)
Published in Nucleic acids research (02.12.2019)
Get full text
Journal Article
The era of reference genomes in conservation genomics
Formenti, Giulio, Bista, Iliana, Bleidorn, Christoph, Ciofi, Claudio, Höglund, Jacob, Paez, Sadye, Paez, Sadye, Palsbøll, Per J., Pampoulie, Christophe, Ruiz-López, María J., de Vries, Jan, Zhang, Guojie, Jarvis, Erich D., Bálint, Miklós, Formenti, Giulio, Fernandes, Carlos, Bista, Iliana, Crottini, Angelica, Mouton, Alice, Palsbøll, Per, Pampoulie, Christophe, Svardal, Hannes, de Vries, Jan, Zhang, Goujie, Mazzoni, Camila J., Bálint, Miklós, Alioto, Tyler S., Almudi, Isabel, Alvarez, Nadir, Alves, Paulo C., Amorim, Isabel R., Antunes, Agostinho, Arribas, Paula, Baldrian, Petr, Berg, Paul R., Böhne, Astrid, Bonisoli-Alquati, Andrea, Boussau, Bastien, Breton, Catherine M., Buzan, Elena, Campos, Paula F., Carreras, Carlos, Castro, L. FIlipe, Conti, Elena, Croll, Daniel, Cunha, Mónica V., Dimitrov, Dimitar, Faria, Rui, Ficetola, Gentile Francesco, Flot, Jean-François, Gabaldón, Toni, Galea Agius, Dolores R., Giani, Alice M., Gilbert, M. Thomas P., Grebenc, Tine, Guschanski, Katerina, Hawlitschek, Oliver, Heintzman, Peter D., Heinze, Berthold, Hiller, Michael, Klinga, Peter, Kratochwil, Claudius F., Layton, Kara K.S., Leonard, Jennifer A., Lerat, Emmanuelle, Liti, Gianni, Manousaki, Tereza, Marques-Bonet, Tomas, Matos-Maraví, Pável, Maumus, Florian, Mc Cartney, Ann M., Mengual, Ximo, Mysłajek, Robert W., Neiber, Marco T., Novo, Marta, Ozretić, Petar, Pascual, Marta, Pavlek, Martina, Pegueroles, Cinta, Pellissier, Loïc, Pesole, Graziano, Primmer, Craig R., Riesgo, Ana, Rüber, Lukas, Salvi, Daniele, Seehausen, Ole, Seidel, Matthias, Secomandi, Simona, Studer, Bruno, Urban, Lara, Vasemägi, Anti, Vella, Adriana, Vella, Noel, Vernes, Sonja C., Vernesi, Cristiano, Vieites, David R., Wheat, Christopher W., Wörheide, Gert, Wurm, Yannick, Zammit, Gabrielle
Published in Trends in ecology & evolution (Amsterdam) (01.03.2022)
Published in Trends in ecology & evolution (Amsterdam) (01.03.2022)
Get full text
Journal Article
Web Resource
How genomics can help biodiversity conservation
Theissinger, Kathrin, Fernandes, Carlos, Formenti, Giulio, Bista, Iliana, Bleidorn, Christoph, Bombarely, Aureliano, Crottini, Angelica, Gallo, Guido R., Godoy, José A., Jentoft, Sissel, Mouton, Alice, Oomen, Rebekah A., Paez, Sadye, Palsbøll, Per J., Pampoulie, Christophe, Ruiz-López, María J., Theofanopoulou, Constantina, de Vries, Jan, Waldvogel, Ann-Marie, Zhang, Guojie, Jarvis, Erich D., Ciofi, Claudio, Mazzoni, Camila J., Höglund, Jacob, Aghayan, Sargis A., Alioto, Tyler S., Almudi, Isabel, Alvarez, Nadir, Alves, Paulo C., Amorim do Rosario, Isabel R., Antunes, Agostinho, Arribas, Paula, Baldrian, Petr, Bertorelle, Giorgio, Böhne, Astrid, Bonisoli-Alquati, Andrea, Boštjančić, Ljudevit L., Boussau, Bastien, Buzan, Elena, Campos, Paula F., Carreras, Carlos, Castro, L. FIlipe C., Chueca, Luis J., Conti, Elena, Croll, Daniel, Dennis, Alice B., Dimitrov, Dimitar, Favre, Adrien, Fedrigo, Olivier D., Fernández, Rosa, Ficetola, Gentile Francesco, Gabaldón, Toni, Agius, Dolores R., Gilbert, M. Thomas P., Grebenc, Tine, Guschanski, Katerina, Guyot, Romain, Hausdorf, Bernhard, Hawlitschek, Oliver, Heintzman, Peter D., Heinze, Berthold, Hiller, Michael, Husemann, Martin, Kloch, Agnieszka, Kusche, Henrik, Layton, Kara K.S., Lerat, Emmanuelle, Manousaki, Tereza, Marques-Bonet, Tomas, Matschiner, Michael, Mc Cartney, Ann M., Meiri, Shai, Melo-Ferreira, José, Mengual, Ximo, Monaghan, Michael T., Montagna, Matteo, Mysłajek, Robert W., Novo, Marta, Ozretić, Petar, Pârvulescu, Lucian, Pascual, Marta, Paulo, Octávio S., Pavlek, Martina, Pesole, Graziano, Primmer, Craig R., Riesgo, Ana, Rubolini, Diego, Salvi, Daniele, Seehausen, Ole, Seidel, Matthias, Studer, Bruno, Theodoridis, Spyros, Thines, Marco, Vasemägi, Anti, Vernes, Sonja C., Vernesi, Cristiano, Vieites, David R., Wörheide, Gert, Wurm, Yannick, Zammit, Gabrielle
Published in Trends in genetics (01.07.2023)
Published in Trends in genetics (01.07.2023)
Get full text
Journal Article
Web Resource
The Atlantic salmon genome provides insights into rediploidization
Lien, Sigbjørn, Koop, Ben F., Sandve, Simen R., Miller, Jason R., Kent, Matthew P., Nome, Torfinn, Hvidsten, Torgeir R., Leong, Jong S., Minkley, David R., Zimin, Aleksey, Grammes, Fabian, Grove, Harald, Gjuvsland, Arne, Walenz, Brian, Hermansen, Russell A., von Schalburg, Kris, Rondeau, Eric B., Di Genova, Alex, Samy, Jeevan K. A., Olav Vik, Jon, Vigeland, Magnus D., Caler, Lis, Grimholt, Unni, Jentoft, Sissel, Inge Våge, Dag, de Jong, Pieter, Moen, Thomas, Baranski, Matthew, Palti, Yniv, Smith, Douglas R., Yorke, James A., Nederbragt, Alexander J., Tooming-Klunderud, Ave, Jakobsen, Kjetill S., Jiang, Xuanting, Fan, Dingding, Hu, Yan, Liberles, David A., Vidal, Rodrigo, Iturra, Patricia, Jones, Steven J. M., Jonassen, Inge, Maass, Alejandro, Omholt, Stig W., Davidson, William S.
Published in Nature (London) (12.05.2016)
Published in Nature (London) (12.05.2016)
Get full text
Journal Article
The Earth BioGenome Project 2020: Starting the clock
Lewin, Harris A, Richards, Stephen, Lieberman Aiden, Erez, Allende, Miguel L, Archibald, John M, Bálint, Miklós, Barker, Katharine B, Baumgartner, Bridget, Belov, Katherine, Bertorelle, Giorgio, Blaxter, Mark L, Cai, Jing, Caperello, Nicolette D, Carlson, Keith, Castilla-Rubio, Juan Carlos, Chaw, Shu-Miaw, Chen, Lei, Childers, Anna K, Coddington, Jonathan A, Conde, Dalia A, Corominas, Montserrat, Crandall, Keith A, Crawford, Andrew J, DiPalma, Federica, Durbin, Richard, Ebenezer, ThankGod E, Edwards, Scott V, Fedrigo, Olivier, Flicek, Paul, Formenti, Giulio, Gibbs, Richard A, Gilbert, M Thomas P, Goldstein, Melissa M, Graves, Jennifer Marshall, Greely, Henry T, Grigoriev, Igor V, Hackett, Kevin J, Hall, Neil, Haussler, David, Helgen, Kristofer M, Hogg, Carolyn J, Isobe, Sachiko, Jakobsen, Kjetill Sigurd, Janke, Axel, Jarvis, Erich D, Johnson, Warren E, Jones, Steven J M, Karlsson, Elinor K, Kersey, Paul J, Kim, Jin-Hyoung, Kress, W John, Kuraku, Shigehiro, Lawniczak, Mara K N, Leebens-Mack, James H, Li, Xueyan, Lindblad-Toh, Kerstin, Liu, Xin, Lopez, Jose V, Marques-Bonet, Tomas, Mazard, Sophie, Mazet, Jonna A K, Mazzoni, Camila J, Myers, Eugene W, O'Neill, Rachel J, Paez, Sadye, Park, Hyun, Robinson, Gene E, Roquet, Cristina, Ryder, Oliver A, Sabir, Jamal S M, Shaffer, H Bradley, Shank, Timothy M, Sherkow, Jacob S, Soltis, Pamela S, Tang, Boping, Tedersoo, Leho, Uliano-Silva, Marcela, Wang, Kun, Wei, Xiaofeng, Wetzer, Regina, Wilson, Julia L, Xu, Xun, Yang, Huanming, Yoder, Anne D, Zhang, Guojie
Published in Proceedings of the National Academy of Sciences - PNAS (25.01.2022)
Published in Proceedings of the National Academy of Sciences - PNAS (25.01.2022)
Get full text
Journal Article
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing
Keeling, Patrick J, Burki, Fabien, Wilcox, Heather M, Allam, Bassem, Allen, Eric E, Amaral-Zettler, Linda A, Armbrust, E Virginia, Archibald, John M, Bharti, Arvind K, Bell, Callum J, Beszteri, Bank, Bidle, Kay D, Cameron, Connor T, Campbell, Lisa, Caron, David A, Cattolico, Rose Ann, Collier, Jackie L, Coyne, Kathryn, Davy, Simon K, Deschamps, Phillipe, Dyhrman, Sonya T, Edvardsen, Bente, Gates, Ruth D, Gobler, Christopher J, Greenwood, Spencer J, Guida, Stephanie M, Jacobi, Jennifer L, Jakobsen, Kjetill S, James, Erick R, Jenkins, Bethany, John, Uwe, Johnson, Matthew D, Juhl, Andrew R, Kamp, Anja, Katz, Laura A, Kiene, Ronald, Kudryavtsev, Alexander, Leander, Brian S, Lin, Senjie, Lovejoy, Connie, Lynn, Denis, Marchetti, Adrian, McManus, George, Nedelcu, Aurora M, Menden-Deuer, Susanne, Miceli, Cristina, Mock, Thomas, Montresor, Marina, Moran, Mary Ann, Murray, Shauna, Nadathur, Govind, Nagai, Satoshi, Ngam, Peter B, Palenik, Brian, Pawlowski, Jan, Petroni, Giulio, Piganeau, Gwenael, Posewitz, Matthew C, Rengefors, Karin, Romano, Giovanna, Rumpho, Mary E, Rynearson, Tatiana, Schilling, Kelly B, Schroeder, Declan C, Simpson, Alastair G B, Slamovits, Claudio H, Smith, David R, Smith, G Jason, Smith, Sarah R, Sosik, Heidi M, Stief, Peter, Theriot, Edward, Twary, Scott N, Umale, Pooja E, Vaulot, Daniel, Wawrik, Boris, Wheeler, Glen L, Wilson, William H, Xu, Yan, Zingone, Adriana, Worden, Alexandra Z
Published in PLoS biology (01.06.2014)
Published in PLoS biology (01.06.2014)
Get full text
Journal Article
De novo gene evolution of antifreeze glycoproteins in codfishes revealed by whole genome sequence data
Baalsrud, Helle Tessand, Tørresen, Ole Kristian, Hongrø Solbakken, Monica, Salzburger, Walter, Hanel, Reinhold, Jakobsen, Kjetill S, Jentoft, Sissel
Published in Molecular biology and evolution (01.03.2018)
Published in Molecular biology and evolution (01.03.2018)
Get full text
Journal Article
Trans-oceanic genomic divergence of Atlantic cod ecotypes is associated with large inversions
Berg, P R, Star, B, Pampoulie, C, Bradbury, I R, Bentzen, P, Hutchings, J A, Jentoft, S, Jakobsen, K S
Published in Heredity (01.12.2017)
Published in Heredity (01.12.2017)
Get full text
Journal Article
The genome sequence of Atlantic cod reveals a unique immune system
Star, Bastiaan, Nederbragt, Alexander J., Jentoft, Sissel, Grimholt, Unni, Malmstrøm, Martin, Gregers, Tone F., Rounge, Trine B., Paulsen, Jonas, Solbakken, Monica H., Sharma, Animesh, Wetten, Ola F., Lanzén, Anders, Winer, Roger, Knight, James, Vogel, Jan-Hinnerk, Aken, Bronwen, Andersen, Øivind, Lagesen, Karin, Tooming-Klunderud, Ave, Edvardsen, Rolf B., Tina, Kirubakaran G., Espelund, Mari, Nepal, Chirag, Previti, Christopher, Karlsen, Bård Ove, Moum, Truls, Skage, Morten, Berg, Paul R., Gjøen, Tor, Kuhl, Heiner, Thorsen, Jim, Malde, Ketil, Reinhardt, Richard, Du, Lei, Johansen, Steinar D., Searle, Steve, Lien, Sigbjørn, Nilsen, Frank, Jonassen, Inge, Omholt, Stig W., Stenseth, Nils Chr, Jakobsen, Kjetill S.
Published in Nature (London) (08.09.2011)
Published in Nature (London) (08.09.2011)
Get full text
Journal Article
Disentangling structural genomic and behavioural barriers in a sea of connectivity
Barth, Julia M. I., Villegas‐Ríos, David, Freitas, Carla, Moland, Even, Star, Bastiaan, André, Carl, Knutsen, Halvor, Bradbury, Ian, Dierking, Jan, Petereit, Christoph, Righton, David, Metcalfe, Julian, Jakobsen, Kjetill S., Olsen, Esben M., Jentoft, Sissel
Published in Molecular ecology (01.03.2019)
Published in Molecular ecology (01.03.2019)
Get full text
Journal Article
Three chromosomal rearrangements promote genomic divergence between migratory and stationary ecotypes of Atlantic cod
Berg, Paul R., Star, Bastiaan, Pampoulie, Christophe, Sodeland, Marte, Barth, Julia M. I., Knutsen, Halvor, Jakobsen, Kjetill S., Jentoft, Sissel
Published in Scientific reports (17.03.2016)
Published in Scientific reports (17.03.2016)
Get full text
Journal Article
Genomic stability through time despite decades of exploitation in cod on both sides of the Atlantic
Pinsky, Malin L., Eikeset, Anne Maria, Helmerson, Cecilia, Bradbury, Ian R., Bentzen, Paul, Morris, Corey, Gondek-Wyrozemska, Agata T., Baalsrud, Helle Tessand, Brieuc, Marine Servane Ono, Kjesbu, Olav Sigurd, Godiksen, Jane A., Barth, Julia M. I., Matschiner, Michael, Stenseth, Nils Chr, Jakobsen, Kjetill S., Jentof, Sissel, Star, Bastiaan
Published in Proceedings of the National Academy of Sciences - PNAS (13.04.2021)
Published in Proceedings of the National Academy of Sciences - PNAS (13.04.2021)
Get full text
Journal Article
Use of high throughput sequencing and light microscopy show contrasting results in a study of phytoplankton occurrence in a freshwater environment
Xiao, Xi, Sogge, Hanne, Lagesen, Karin, Tooming-Klunderud, Ave, Jakobsen, Kjetill S, Rohrlack, Thomas
Published in PloS one (29.08.2014)
Published in PloS one (29.08.2014)
Get full text
Journal Article
Linking species habitat and past palaeoclimatic events to evolution of the teleost innate immune system
Solbakken, Monica Hongrø, Voje, Kjetil Lysne, Jakobsen, Kjetill Sigurd, Jentoft, Sissel
Published in Proceedings of the Royal Society. B, Biological sciences (26.04.2017)
Published in Proceedings of the Royal Society. B, Biological sciences (26.04.2017)
Get full text
Journal Article
Genome architecture enables local adaptation of Atlantic cod despite high connectivity
Barth, Julia M. I., Berg, Paul R., Jonsson, Per R., Bonanomi, Sara, Corell, Hanna, Hemmer‐Hansen, Jakob, Jakobsen, Kjetill S., Johannesson, Kerstin, Jorde, Per Erik, Knutsen, Halvor, Moksnes, Per‐Olav, Star, Bastiaan, Stenseth, Nils Chr, Svedäng, Henrik, Jentoft, Sissel, André, Carl
Published in Molecular ecology (01.09.2017)
Published in Molecular ecology (01.09.2017)
Get full text
Journal Article