Plasma metabolomics and gene regulatory networks analysis reveal the role of nonstructural SARS-CoV-2 viral proteins in metabolic dysregulation in COVID-19 patients
Ivanisenko, V A, Gaisler, E V, Basov, N V, Rogachev, A D, Cheresiz, S V, Ivanisenko, T V, Demenkov, P S, Mishchenko, E L, Khripko, O P, Khripko, Yu I, Voevoda, S M, Karpenko, T N, Velichko, A J, Voevoda, M I, Kolchanov, N A, Pokrovsky, A G
Published in Scientific reports (20.11.2022)
Published in Scientific reports (20.11.2022)
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Journal Article
ANDDigest: a new web-based module of ANDSystem for the search of knowledge in the scientific literature
Ivanisenko, Timofey V, Saik, Olga V, Demenkov, Pavel S, Ivanisenko, Nikita V, Savostianov, Alexander N, Ivanisenko, Vladimir A
Published in BMC bioinformatics (14.09.2020)
Published in BMC bioinformatics (14.09.2020)
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Journal Article
Computer analysis of regulation of hepatocarcinoma marker genes hypermethylated by HCV proteins
Antropova, E A, Khlebodarova, T M, Demenkov, P S, Venzel, A S, Ivanisenko, N V, Gavrilenko, A D, Ivanisenko, T V, Adamovskaya, A V, Revva, P M, Lavrik, I N, Ivanisenko, V A
Published in Vavilovskiĭ zhurnal genetiki i selekt͡s︡ii (01.12.2022)
Published in Vavilovskiĭ zhurnal genetiki i selekt͡s︡ii (01.12.2022)
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Journal Article
Prioritization of potential pharmacological targets for the development of anti-hepatocarcinoma drugs modulating the extrinsic apoptosis pathway: the reconstruction and analysis of associative gene networks help
Demenkov, P S, Antropova, E A, Adamovskaya, A V, Mishchenko, E L, Khlebodarova, T M, Ivanisenko, T V, Ivanisenko, N V, Venzel, A S, Lavrik, I N, Ivanisenko, V A
Published in Vavilovskiĭ zhurnal genetiki i selekt͡s︡ii (01.12.2023)
Published in Vavilovskiĭ zhurnal genetiki i selekt͡s︡ii (01.12.2023)
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Journal Article
The effect of composition and microstructure on hardness and toughness of Mo2FeB2 based cermets
Ivanov, Maxim B., Vershinina, Tatiana N., Ivanisenko, Victor V.
Published in Materials science & engineering. A, Structural materials : properties, microstructure and processing (19.08.2019)
Published in Materials science & engineering. A, Structural materials : properties, microstructure and processing (19.08.2019)
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Journal Article
SEMA: Antigen B-cell conformational epitope prediction using deep transfer learning
Shashkova, Tatiana I., Umerenkov, Dmitriy, Salnikov, Mikhail, Strashnov, Pavel V., Konstantinova, Alina V., Lebed, Ivan, Shcherbinin, Dmitriy N., Asatryan, Marina N., Kardymon, Olga L., Ivanisenko, Nikita V.
Published in Frontiers in immunology (15.09.2022)
Published in Frontiers in immunology (15.09.2022)
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Journal Article
Controlling Cell Death through Post-translational Modifications of DED Proteins
Seyrek, Kamil, Ivanisenko, Nikita V., Richter, Max, Hillert, Laura K., König, Corinna, Lavrik, Inna N.
Published in Trends in cell biology (01.05.2020)
Published in Trends in cell biology (01.05.2020)
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Journal Article
Molecular-genetic pathways of hepatitis C virus regulation of the expression of cellular factors PREB and PLA2G4C, which play an important role in virus replication
Mishchenko, E L, Makarova, A A, Antropova, E A, Venzel, A S, Ivanisenko, T V, Demenkov, P S, Ivanisenko, V A
Published in Vavilovskiĭ zhurnal genetiki i selekt͡s︡ii (01.12.2023)
Published in Vavilovskiĭ zhurnal genetiki i selekt͡s︡ii (01.12.2023)
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Journal Article
Gene networks for use in metabolomic data analysis of blood plasma from patients with postoperative delirium
Ivanisenko, V A, Basov, N V, Makarova, A A, Venzel, A S, Rogachev, A D, Demenkov, P S, Ivanisenko, T V, Kleshchev, M A, Gaisler, E V, Moroz, G B, Plesko, V V, Sotnikova, Y S, Patrushev, Y V, Lomivorotov, V V, Kolchanov, N A, Pokrovsky, A G
Published in Vavilovskiĭ zhurnal genetiki i selekt͡s︡ii (01.12.2023)
Published in Vavilovskiĭ zhurnal genetiki i selekt͡s︡ii (01.12.2023)
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Journal Article
Long and short isoforms of c-FLIP act as control checkpoints of DED filament assembly
Hillert, Laura K, Ivanisenko, Nikita V, Espe, Johannes, König, Corinna, Ivanisenko, Vladimir A, Kähne, Thilo, Lavrik, Inna N
Published in Oncogene (01.02.2020)
Published in Oncogene (01.02.2020)
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Journal Article
A new version of the ANDSystem tool for automatic extraction of knowledge from scientific publications with expanded functionality for reconstruction of associative gene networks by considering tissue-specific gene expression
Ivanisenko, Vladimir A, Demenkov, Pavel S, Ivanisenko, Timofey V, Mishchenko, Elena L, Saik, Olga V
Published in BMC bioinformatics (05.02.2019)
Published in BMC bioinformatics (05.02.2019)
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Journal Article
Prioritization of biological processes based on the reconstruction and analysis of associative gene networks describing the response of plants to adverse environmental factors
Demenkov, P. S., Oshchepkova, E. A., Ivanisenko, T. V., Ivanisenko, V. A.
Published in Vavilovskiĭ zhurnal genetiki i selekt͡s︡ii (01.09.2021)
Published in Vavilovskiĭ zhurnal genetiki i selekt͡s︡ii (01.09.2021)
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Journal Article
Reconstruction and analysis of the gene regulatory network for cell wall function in Arabidopsis thaliana L. leaves in response to water deficit
Volyanskaya, A R, Antropova, E A, Zubairova, U S, Demenkov, P S, Venzel, A S, Orlov, Y L, Makarova, A A, Ivanisenko, T V, Gorshkova, T A, Aglyamova, A R, Kolchanov, N A, Chen, M, Ivanisenko, V A
Published in Vavilovskiĭ zhurnal genetiki i selekt͡s︡ii (01.12.2023)
Published in Vavilovskiĭ zhurnal genetiki i selekt͡s︡ii (01.12.2023)
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Journal Article
Correlation of Metabolic Profiles of Plasma and Cerebrospinal Fluid of High-Grade Glioma Patients
Rogachev, A D, Alemasov, N A, Ivanisenko, V A, Ivanisenko, N V, Gaisler, E V, Oleshko, O S, Cheresiz, S V, Mishinov, S V, Stupak, V V, Pokrovsky, A G
Published in Metabolites (25.02.2021)
Published in Metabolites (25.02.2021)
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Journal Article
Reconstruction of the regulatory hypermethylation network controlling hepatocellular carcinoma development during hepatitis C viral infection
Antropova, Evgeniya A., Khlebodarova, Tamara M., Demenkov, Pavel S., Volianskaia, Anastasiia R., Venzel, Artur S., Ivanisenko, Nikita V., Gavrilenko, Alexandr D., Ivanisenko, Timofey V., Adamovskaya, Anna V., Revva, Polina M., Kolchanov, Nikolay A., Lavrik, Inna N., Ivanisenko, Vladimir A.
Published in Journal of integrative bioinformatics (01.09.2023)
Published in Journal of integrative bioinformatics (01.09.2023)
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Journal Article
ANDSystem: an Associative Network Discovery System for automated literature mining in the field of biology
Ivanisenko, Vladimir A, Saik, Olga V, Ivanisenko, Nikita V, Tiys, Evgeny S, Ivanisenko, Timofey V, Demenkov, Pavel S, Kolchanov, Nikolay A
Published in BMC systems biology (15.04.2015)
Published in BMC systems biology (15.04.2015)
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Journal Article
The role of death domain proteins in host response upon SARS-CoV-2 infection: modulation of programmed cell death and translational applications
Ivanisenko, Nikita V, Seyrek, Kamil, Kolchanov, Nikolay A, Ivanisenko, Vladimir A, Lavrik, Inna N
Published in Cell death discovery (10.10.2020)
Published in Cell death discovery (10.10.2020)
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Journal Article