De Novo Assembly of a New Solanum pennellii Accession Using Nanopore Sequencing
Schmidt, Maximilian H.-W., Vogel, Alexander, Denton, Alisandra K., Istace, Benjamin, Wormit, Alexandra, van de Geest, Henri, Bolger, Marie E., Alseekh, Saleh, Maß, Janina, Pfaff, Christian, Schurr, Ulrich, Chetelat, Roger, Maumus, Florian, Aury, Jean-Marc, Koren, Sergey, Fernie, Alisdair R., Zamir, Dani, Bolger, Anthony M., Usadel, Björn
Published in The Plant cell (01.10.2017)
Published in The Plant cell (01.10.2017)
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Journal Article
Telomere-to-telomere gapless chromosomes of banana using nanopore sequencing
Belser, Caroline, Baurens, Franc-Christophe, Noel, Benjamin, Martin, Guillaume, Cruaud, Corinne, Istace, Benjamin, Yahiaoui, Nabila, Labadie, Karine, Hřibová, Eva, Doležel, Jaroslav, Lemainque, Arnaud, Wincker, Patrick, D’Hont, Angélique, Aury, Jean-Marc
Published in Communications biology (07.09.2021)
Published in Communications biology (07.09.2021)
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Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps
Belser, Caroline, Istace, Benjamin, Denis, Erwan, Dubarry, Marion, Baurens, Franc-Christophe, Falentin, Cyril, Genete, Mathieu, Berrabah, Wahiba, Chèvre, Anne-Marie, Delourme, Régine, Deniot, Gwenaëlle, Denoeud, France, Duffé, Philippe, Engelen, Stefan, Lemainque, Arnaud, Manzanares-Dauleux, Maria, Martin, Guillaume, Morice, Jérôme, Noel, Benjamin, Vekemans, Xavier, D’Hont, Angélique, Rousseau-Gueutin, Mathieu, Barbe, Valérie, Cruaud, Corinne, Wincker, Patrick, Aury, Jean-Marc
Published in Nature plants (01.11.2018)
Published in Nature plants (01.11.2018)
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Population genomics of apricots unravels domestication history and adaptive events
Groppi, Alexis, Liu, Shuo, Cornille, Amandine, Decroocq, Stéphane, Bui, Quynh Trang, Tricon, David, Cruaud, Corinne, Arribat, Sandrine, Belser, Caroline, Marande, William, Salse, Jérôme, Huneau, Cécile, Rodde, Nathalie, Rhalloussi, Wassim, Cauet, Stéphane, Istace, Benjamin, Denis, Erwan, Carrère, Sébastien, Audergon, Jean-Marc, Roch, Guillaume, Lambert, Patrick, Zhebentyayeva, Tetyana, Liu, Wei-Sheng, Bouchez, Olivier, Lopez-Roques, Céline, Serre, Rémy-Félix, Debuchy, Robert, Tran, Joseph, Wincker, Patrick, Chen, Xilong, Pétriacq, Pierre, Barre, Aurélien, Nikolski, Macha, Aury, Jean-Marc, Abbott, Albert Glenn, Giraud, Tatiana, Decroocq, Véronique
Published in Nature communications (25.06.2021)
Published in Nature communications (25.06.2021)
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Journal Article
Long-read assembly of the Brassica napus reference genome Darmor-bzh
Rousseau-Gueutin, Mathieu, Belser, Caroline, Da Silva, Corinne, Richard, Gautier, Istace, Benjamin, Cruaud, Corinne, Falentin, Cyril, Boideau, Franz, Boutte, Julien, Delourme, Regine, Deniot, Gwenaëlle, Engelen, Stefan, de Carvalho, Julie Ferreira, Lemainque, Arnaud, Maillet, Loeiz, Morice, Jérôme, Wincker, Patrick, Denoeud, France, Chèvre, Anne-Marie, Aury, Jean-Marc
Published in Gigascience (15.12.2020)
Published in Gigascience (15.12.2020)
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Journal Article
Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variation detection
Canaguier, Aurélie, Guilbaud, Romane, Denis, Erwan, Magdelenat, Ghislaine, Belser, Caroline, Istace, Benjamin, Cruaud, Corinne, Wincker, Patrick, Le Paslier, Marie-Christine, Faivre-Rampant, Patricia, Barbe, Valérie
Published in BMC genomics (21.04.2022)
Published in BMC genomics (21.04.2022)
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Journal Article
BiSCoT: improving large eukaryotic genome assemblies with optical maps
Istace, Benjamin, Belser, Caroline, Aury, Jean-Marc
Published in PeerJ (San Francisco, CA) (05.11.2020)
Published in PeerJ (San Francisco, CA) (05.11.2020)
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Journal Article
Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp
Farhat, Sarah, Le, Phuong, Kayal, Ehsan, Noel, Benjamin, Bigeard, Estelle, Corre, Erwan, Maumus, Florian, Florent, Isabelle, Alberti, Adriana, Aury, Jean-Marc, Barbeyron, Tristan, Cai, Ruibo, Da Silva, Corinne, Istace, Benjamin, Labadie, Karine, Marie, Dominique, Mercier, Jonathan, Rukwavu, Tsinda, Szymczak, Jeremy, Tonon, Thierry, Alves-de-Souza, Catharina, Rouzé, Pierre, Van de Peer, Yves, Wincker, Patrick, Rombauts, Stephane, Porcel, Betina M, Guillou, Laure
Published in BMC biology (06.01.2021)
Published in BMC biology (06.01.2021)
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Journal Article
Sequencing and Chromosome-Scale Assembly of Plant Genomes, Brassica rapa as a Use Case
Istace, Benjamin, Belser, Caroline, Falentin, Cyril, Labadie, Karine, Boideau, Franz, Deniot, Gwenaëlle, Maillet, Loeiz, Cruaud, Corinne, Bertrand, Laurie, Chèvre, Anne-Marie, Wincker, Patrick, Rousseau-Gueutin, Mathieu, Aury, Jean-Marc
Published in Biology (Basel, Switzerland) (30.07.2021)
Published in Biology (Basel, Switzerland) (30.07.2021)
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Author Correction to: Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp
Farhat, Sarah, Le, Phuong, Kayal, Ehsan, Noel, Benjamin, Bigeard, Estelle, Corre, Erwan, Maumus, Florian, Florent, Isabelle, Alberti, Adriana, Aury, Jean-Marc, Barbeyron, Tristan, Cai, Ruibo, Da Silva, Corinne, Istace, Benjamin, Labadie, Karine, Marie, Dominique, Mercier, Jonathan, Rukwavu, Tsinda, Szymczak, Jeremy, Tonon, Thierry, Alves-de-Souza, Catharina, Rouzé, Pierre, Van de Peer, Yves, Wincker, Patrick, Rombauts, Stephane, Porcel, Betina M, Guillou, Laure
Published in BMC biology (22.09.2021)
Published in BMC biology (22.09.2021)
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Journal Article
Genomic adaptation of the picoeukaryote Pelagomonas calceolata to iron-poor oceans revealed by a chromosome-scale genome sequence
Guérin, Nina, Ciccarella, Marta, Flamant, Elisa, Frémont, Paul, Mangenot, Sophie, Istace, Benjamin, Noel, Benjamin, Belser, Caroline, Bertrand, Laurie, Labadie, Karine, Cruaud, Corinne, Romac, Sarah, Bachy, Charles, Gachenot, Martin, Pelletier, Eric, Alberti, Adriana, Jaillon, Olivier, Wincker, Patrick, Aury, Jean-Marc, Carradec, Quentin
Published in Communications biology (16.09.2022)
Published in Communications biology (16.09.2022)
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Journal Article
Author Correction: The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics
Mouton, Alice, Marins, Luísa S., Diedericks, Genevieve, Morselli, Marco, Salces-Ortiz, Judit, Natali, Chiara, Svardal, Hannes, De Pooter, Tim, Joris, Geert, Wood, Jonathan M. D., Herron, Katie E., Watts, Phillip C., Davey, Robert P., Fernández, José M., Alegria, Carla, Amorim, Isabel R., Aury, Jean-Marc, Baldrian, Petr, Baltrunaite, Laima, Barta, Endre, BedHom, Bertrand, Binzer-Panchal, Mahesh, Bista, Iliana, Borges, Paulo A. V., Dias, Guilherme Borges, Buena-Atienza, Elena, Chiara, Matteo, Cruz, Fernando, De Biase, Alessio, del Campo, Javier, Derks, Martijn F. L., Duprat, Simone, Flot, Jean-François, Forni, Giobbe, Fosso, Bruno, Fournier-Chambrillon, Christine, Garg, Shilpa, Gissi, Carmela, Giupponi, Luca, Grüning, Björn, Guerin, Thomas, Hahn, Christoph, Harrison, Peter W., Heintz, Julia, Howe, Kerstin, Hughes, Graham M., Istace, Benjamin, Janžekovič, Franc, Jonsson, Zophonias O., Koskimäki, Janne J., Lähteenaro, Meri, Lantz, Henrik, Lavrinienko, Anton, Madsen, Ole, Magdelenat, Ghislaine, Manousaki, Tereza, Mappes, Tapio, Redondo, Gemma I. Martinez, Mendes, Sofia L., Montagna, Matteo, Moreno, Joao, Mosbech, Mai-Britt, Moura, Mónica, Musilova, Zuzana, Myers, Eugene, Nater, Alexander, Nicholson, Pamela, Niell, Manuel, Nijland, Reindert, Noel, Benjamin, Olsen, Remi-Andre, Ometto, Lino, Palinauskas, Vaidas, Palsson, Snaebjorn, Panibe, Jerome P., Pavlek, Martina, Poulakakis, Nikos, Resendes, Roberto, Riesgo, Ana, Soares, Andre E. R., Romeiras, Maria M., Roxo, Guilherme, Rüber, Lukas, Ruiz-Lopez, Maria Jose, Spada, Alberto, Stefanovic, Milomir, Steger, Viktor, Stiller, Josefin, Stöck, Matthias, Trindade, Helena, Vacherie, Benoit, Vargas-Chavez, Carlos, Vella, Noel, Vella, Adriana, Villa, Sara, Wincker, Patrick, Winkler, Sylke, Ciofi, Claudio, Waterhouse, Robert M., Mazzoni, Camila J.
Published in Npj Biodiversity (15.10.2024)
Published in Npj Biodiversity (15.10.2024)
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Journal Article
The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics
Formenti, Giulio, Leitão, Henrique G., Morselli, Marco, Fernández, Rosa, Joris, Geert, Herron, Katie E., Watts, Phillip C., Shaw, Felix, Davey, Robert P., Fernández, José M., Böhne, Astrid, Alves, Paulo C., Amorim, Isabel R., Baltrunaite, Laima, Barta, Endre, BedHom, Bertrand, Belser, Caroline, Bista, Iliana, Blaxter, Mark, Borges, Paulo, Dias, Guilherme Borges, Bosse, Mirte, Bruggmann, Rémy, Buena-Atienza, Elena, Burgin, Josephine, Buzan, Elena, Chozas, Sergio, Čiampor, Fedor, Dalen, Love, del Campo, Javier, Delic, Teo, Dennis, Alice B., Derks, Martijn F. L., Djan, Mihajla, Forni, Giobbe, Fournier, Pascal, Fournier-Chambrillon, Christine, Gissi, Carmela, González, Josefa, Grilo, Miguel L., Grüning, Björn, Haesler, Marcel P., Hahn, Christoph, Heintz, Julia, Höglund, Jacob, Hughes, Graham M., Cock, Mark J., Jonsson, Zophonias O., Koskimäki, Janne J., Kuhl, Heiner, Kusza, Szilvia, Labadie, Karine, Lähteenaro, Meri, Lopes, Ricardo Jorge, Magdelenat, Ghislaine, Manousaki, Tereza, Maumus, Florian, McCarthy, Shane A., Moura, Mónica, Myers, Eugene, Nash, Will J., Nicholson, Pamela, Niell, Manuel, Nijland, Reindert, Noel, Benjamin, Oliveira, Pedro H., Olsen, Remi-Andre, Ometto, Lino, Ossowski, Stephan, Palinauskas, Vaidas, Palsson, Snaebjorn, Panibe, Jerome P., Pauperio, Joana, Payen, Emilie, Pesole, Graziano, Pippel, Martin, Pirttilä, Anna Maria, Poulakakis, Nikos, M.C. Rego, Rúben, Resl, Philipp, Fernandes, Carlos Rodriguez, Roxo, Guilherme, Ruiz-Lopez, Maria Jose, Santos, Carla Sousa, Spada, Alberto, Struck, Torsten H., Sudasinghe, Hiranya, Trindade, Helena, Van Oers, Kees, Vargas-Chavez, Carlos, Velickovic, Nevena, Vella, Noel, Vella, Adriana, Vernesi, Cristiano, Vicente, Sara, Volckaert, Filip A. M., Voros, Judit, Winkler, Sylke, Ciofi, Claudio, Mazzoni, Camila J.
Published in Npj Biodiversity (17.09.2024)
Published in Npj Biodiversity (17.09.2024)
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Journal Article
Chromosome-scale assembly of the yellow mealworm genome
Eleftheriou, Evangelia, Aury, Jean-Marc, Vacherie, Benoît, Istace, Benjamin, Belser, Caroline, Noel, Benjamin, Moret, Yannick, Rigaud, Thierry, Berro, Fabrice, Gasparian, Sona, Labadie-Bretheau, Karine, Lefebvre, Thomas, Madoui, Mohammed-Amin
Published in Open research Europe (01.01.2021)
Published in Open research Europe (01.01.2021)
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Journal Article
Genome evolution across 1,011 Saccharomyces cerevisiae isolates
Peter, Jackson, De Chiara, Matteo, Friedrich, Anne, Yue, Jia-Xing, Pflieger, David, Bergström, Anders, Sigwalt, Anastasie, Barre, Benjamin, Freel, Kelle, Llored, Agnès, Cruaud, Corinne, Labadie, Karine, Aury, Jean-Marc, Istace, Benjamin, Lebrigand, Kevin, Barbry, Pascal, Engelen, Stefan, Lemainque, Arnaud, Wincker, Patrick, Liti, Gianni, Schacherer, Joseph
Published in Nature (London) (01.04.2018)
Published in Nature (London) (01.04.2018)
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Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data
Lima, Leandro, Marchet, Camille, Caboche, Ségolène, Da Silva, Corinne, Istace, Benjamin, Aury, Jean-Marc, Touzet, Hélène, Chikhi, Rayan
Published in Briefings in bioinformatics (15.07.2020)
Published in Briefings in bioinformatics (15.07.2020)
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Journal Article
Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variation detection
Canaguier, Aurélie, Guilbaud, Romane, Denis, Erwan, Magdelenat, Ghislaine, Belser, Caroline, Istace, Benjamin, Cruaud, Corinne, Wincker, Patrick, Le Paslier, Marie-Christine, Barbe, Valérie
Published in BMC genomics (21.04.2022)
Published in BMC genomics (21.04.2022)
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