nnU-Net: a self-configuring method for deep learning-based biomedical image segmentation
Isensee, Fabian, Jaeger, Paul F., Kohl, Simon A. A., Petersen, Jens, Maier-Hein, Klaus H.
Published in Nature methods (01.02.2021)
Published in Nature methods (01.02.2021)
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Journal Article
Brain Tumor Segmentation and Radiomics Survival Prediction: Contribution to the BRATS 2017 Challenge
Isensee, Fabian, Kickingereder, Philipp, Wick, Wolfgang, Bendszus, Martin, Maier-Hein, Klaus H.
Published in Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries (2018)
Published in Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries (2018)
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Book Chapter
CHAOS Challenge - combined (CT-MR) healthy abdominal organ segmentation
Kavur, A. Emre, Gezer, N. Sinem, Barış, Mustafa, Aslan, Sinem, Conze, Pierre-Henri, Groza, Vladimir, Pham, Duc Duy, Chatterjee, Soumick, Ernst, Philipp, Özkan, Savaş, Baydar, Bora, Lachinov, Dmitry, Han, Shuo, Pauli, Josef, Isensee, Fabian, Perkonigg, Matthias, Sathish, Rachana, Rajan, Ronnie, Sheet, Debdoot, Dovletov, Gurbandurdy, Speck, Oliver, Nürnberger, Andreas, Maier-Hein, Klaus H., Bozdağı Akar, Gözde, Ünal, Gözde, Dicle, Oğuz, Selver, M. Alper
Published in Medical image analysis (01.04.2021)
Published in Medical image analysis (01.04.2021)
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Journal Article
Automated volumetric assessment with artificial neural networks might enable a more accurate assessment of disease burden in patients with multiple sclerosis
Brugnara, Gianluca, Isensee, Fabian, Neuberger, Ulf, Bonekamp, David, Petersen, Jens, Diem, Ricarda, Wildemann, Brigitte, Heiland, Sabine, Wick, Wolfgang, Bendszus, Martin, Maier-Hein, Klaus, Kickingereder, Philipp
Published in European radiology (01.04.2020)
Published in European radiology (01.04.2020)
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Journal Article
Rapid artificial intelligence solutions in a pandemic—The COVID-19-20 Lung CT Lesion Segmentation Challenge
Roth, Holger R., Xu, Ziyue, Tor-Díez, Carlos, Sanchez Jacob, Ramon, Zember, Jonathan, Molto, Jose, Li, Wenqi, Xu, Sheng, Turkbey, Baris, Turkbey, Evrim, Yang, Dong, Harouni, Ahmed, Rieke, Nicola, Hu, Shishuai, Isensee, Fabian, Tang, Claire, Yu, Qinji, Sölter, Jan, Zheng, Tong, Liauchuk, Vitali, Zhou, Ziqi, Moltz, Jan Hendrik, Oliveira, Bruno, Xia, Yong, Maier-Hein, Klaus H., Li, Qikai, Husch, Andreas, Zhang, Luyang, Kovalev, Vassili, Kang, Li, Hering, Alessa, Vilaça, João L., Flores, Mona, Xu, Daguang, Wood, Bradford, Linguraru, Marius George
Published in Medical image analysis (01.11.2022)
Published in Medical image analysis (01.11.2022)
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Journal Article
Addressing image misalignments in multi-parametric prostate MRI for enhanced computer-aided diagnosis of prostate cancer
Kovacs, Balint, Netzer, Nils, Baumgartner, Michael, Schrader, Adrian, Isensee, Fabian, Weißer, Cedric, Wolf, Ivo, Görtz, Magdalena, Jaeger, Paul F., Schütz, Victoria, Floca, Ralf, Gnirs, Regula, Stenzinger, Albrecht, Hohenfellner, Markus, Schlemmer, Heinz-Peter, Bonekamp, David, Maier-Hein, Klaus H.
Published in Scientific reports (13.11.2023)
Published in Scientific reports (13.11.2023)
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Journal Article
Deep-learning-based synthesis of post-contrast T1-weighted MRI for tumour response assessment in neuro-oncology: a multicentre, retrospective cohort study
Jayachandran Preetha, Chandrakanth, Meredig, Hagen, Brugnara, Gianluca, Mahmutoglu, Mustafa A, Foltyn, Martha, Isensee, Fabian, Kessler, Tobias, Pflüger, Irada, Schell, Marianne, Neuberger, Ulf, Petersen, Jens, Wick, Antje, Heiland, Sabine, Debus, Jürgen, Platten, Michael, Idbaih, Ahmed, Brandes, Alba A, Winkler, Frank, van den Bent, Martin J, Nabors, Burt, Stupp, Roger, Maier-Hein, Klaus H, Gorlia, Thierry, Tonn, Jörg-Christian, Weller, Michael, Wick, Wolfgang, Bendszus, Martin, Vollmuth, Philipp
Published in The Lancet. Digital health (01.12.2021)
Published in The Lancet. Digital health (01.12.2021)
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Journal Article
Kidney and Kidney Tumor Segmentation: MICCAI 2021 Challenge, KiTS 2021, Held in Conjunction with MICCAI 2021, Strasbourg, France, September 27, 2021, Proceedings
Heller, Nicholas, Isensee, Fabian, Trofimova, Darya, Tejpaul, Resha, Papanikolopoulos, Nikolaos, Weight, Christopher
Year of Publication 2022
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Year of Publication 2022
eBook
Semantic segmentation of multispectral photoacoustic images using deep learning
Schellenberg, Melanie, Dreher, Kris K., Holzwarth, Niklas, Isensee, Fabian, Reinke, Annika, Schreck, Nicholas, Seitel, Alexander, Tizabi, Minu D., Maier-Hein, Lena, Gröhl, Janek
Published in Photoacoustics (Munich) (01.06.2022)
Published in Photoacoustics (Munich) (01.06.2022)
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Journal Article
Automated brain extraction of multisequence MRI using artificial neural networks
Isensee, Fabian, Schell, Marianne, Pflueger, Irada, Brugnara, Gianluca, Bonekamp, David, Neuberger, Ulf, Wick, Antje, Schlemmer, Heinz‐Peter, Heiland, Sabine, Wick, Wolfgang, Bendszus, Martin, Maier‐Hein, Klaus H., Kickingereder, Philipp
Published in Human brain mapping (01.12.2019)
Published in Human brain mapping (01.12.2019)
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Journal Article
The state of the art in kidney and kidney tumor segmentation in contrast-enhanced CT imaging: Results of the KiTS19 challenge
Heller, Nicholas, Isensee, Fabian, Maier-Hein, Klaus H., Hou, Xiaoshuai, Xie, Chunmei, Li, Fengyi, Nan, Yang, Mu, Guangrui, Lin, Zhiyong, Han, Miofei, Yao, Guang, Gao, Yaozong, Zhang, Yao, Wang, Yixin, Hou, Feng, Yang, Jiawei, Xiong, Guangwei, Tian, Jiang, Zhong, Cheng, Ma, Jun, Rickman, Jack, Dean, Joshua, Stai, Bethany, Tejpaul, Resha, Oestreich, Makinna, Blake, Paul, Kaluzniak, Heather, Raza, Shaneabbas, Rosenberg, Joel, Moore, Keenan, Walczak, Edward, Rengel, Zachary, Edgerton, Zach, Vasdev, Ranveer, Peterson, Matthew, McSweeney, Sean, Peterson, Sarah, Kalapara, Arveen, Sathianathen, Niranjan, Papanikolopoulos, Nikolaos, Weight, Christopher
Published in Medical image analysis (01.01.2021)
Published in Medical image analysis (01.01.2021)
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Journal Article
Deep Learning Techniques for Automatic MRI Cardiac Multi-Structures Segmentation and Diagnosis: Is the Problem Solved?
Bernard, Olivier, Lalande, Alain, Zotti, Clement, Cervenansky, Frederick, Yang, Xin, Heng, Pheng-Ann, Cetin, Irem, Lekadir, Karim, Camara, Oscar, Gonzalez Ballester, Miguel Angel, Sanroma, Gerard, Napel, Sandy, Petersen, Steffen, Tziritas, Georgios, Grinias, Elias, Khened, Mahendra, Kollerathu, Varghese Alex, Krishnamurthi, Ganapathy, Rohe, Marc-Michel, Pennec, Xavier, Sermesant, Maxime, Isensee, Fabian, Jager, Paul, Maier-Hein, Klaus H., Full, Peter M., Wolf, Ivo, Engelhardt, Sandy, Baumgartner, Christian F., Koch, Lisa M., Wolterink, Jelmer M., Isgum, Ivana, Jang, Yeonggul, Hong, Yoonmi, Patravali, Jay, Jain, Shubham, Humbert, Olivier, Jodoin, Pierre-Marc
Published in IEEE transactions on medical imaging (01.11.2018)
Published in IEEE transactions on medical imaging (01.11.2018)
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Journal Article
Automated quantitative tumour response assessment of MRI in neuro-oncology with artificial neural networks: a multicentre, retrospective study
Kickingereder, Philipp, Isensee, Fabian, Tursunova, Irada, Petersen, Jens, Neuberger, Ulf, Bonekamp, David, Brugnara, Gianluca, Schell, Marianne, Kessler, Tobias, Foltyn, Martha, Harting, Inga, Sahm, Felix, Prager, Marcel, Nowosielski, Martha, Wick, Antje, Nolden, Marco, Radbruch, Alexander, Debus, Jürgen, Schlemmer, Heinz-Peter, Heiland, Sabine, Platten, Michael, von Deimling, Andreas, van den Bent, Martin J, Gorlia, Thierry, Wick, Wolfgang, Bendszus, Martin, Maier-Hein, Klaus H
Published in The lancet oncology (01.05.2019)
Published in The lancet oncology (01.05.2019)
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Journal Article
Standardized and semiautomated workflow for 3D characterization of liberated particles
Gupta, Shuvam, da Assuncao Godinho, Jose Ricardo, Gotkowski, Karol, Isensee, Fabian
Published in Powder technology (15.01.2024)
Published in Powder technology (15.01.2024)
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Journal Article
Can Virtual Contrast Enhancement in Brain MRI Replace Gadolinium?: A Feasibility Study
Kleesiek, Jens, Morshuis, Jan Nikolas, Isensee, Fabian, Deike-Hofmann, Katerina, Paech, Daniel, Kickingereder, Philipp, Köthe, Ullrich, Rother, Carsten, Forsting, Michael, Wick, Wolfgang, Bendszus, Martin, Schlemmer, Heinz-Peter, Radbruch, Alexander
Published in Investigative radiology (01.10.2019)
Published in Investigative radiology (01.10.2019)
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Journal Article
Classification of diffraction patterns using a convolutional neural network in single‐particle‐imaging experiments performed at X‐ray free‐electron lasers
Assalauova, Dameli, Ignatenko, Alexandr, Isensee, Fabian, Trofimova, Darya, Vartanyants, Ivan A.
Published in Journal of applied crystallography (01.06.2022)
Published in Journal of applied crystallography (01.06.2022)
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Journal Article
Automatic Cardiac Disease Assessment on cine-MRI via Time-Series Segmentation and Domain Specific Features
Isensee, Fabian, Jaeger, Paul F., Full, Peter M., Wolf, Ivo, Engelhardt, Sandy, Maier-Hein, Klaus H.
Published in Statistical Atlases and Computational Models of the Heart. ACDC and MMWHS Challenges (2018)
Published in Statistical Atlases and Computational Models of the Heart. ACDC and MMWHS Challenges (2018)
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Book Chapter