Estimating the Contribution of Proteasomal Spliced Peptides to the HLA-I Ligandome
Mylonas, Roman, Beer, Ilan, Iseli, Christian, Chong, Chloe, Pak, Hui-Song, Gfeller, David, Coukos, George, Xenarios, Ioannis, Müller, Markus, Bassani-Sternberg, Michal
Published in Molecular & cellular proteomics (01.12.2018)
Published in Molecular & cellular proteomics (01.12.2018)
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Journal Article
Sensitive and frequent identification of high avidity neo-epitope specific CD8+ T cells in immunotherapy-naive ovarian cancer
Bobisse, Sara, Genolet, Raphael, Roberti, Annalisa, Tanyi, Janos L., Racle, Julien, Stevenson, Brian J., Iseli, Christian, Michel, Alexandra, Le Bitoux, Marie-Aude, Guillaume, Philippe, Schmidt, Julien, Bianchi, Valentina, Dangaj, Denarda, Fenwick, Craig, Derré, Laurent, Xenarios, Ioannis, Michielin, Olivier, Romero, Pedro, Monos, Dimitri S., Zoete, Vincent, Gfeller, David, Kandalaft, Lana E., Coukos, George, Harari, Alexandre
Published in Nature communications (15.03.2018)
Published in Nature communications (15.03.2018)
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Journal Article
CTCF loss has limited effects on global genome architecture in Drosophila despite critical regulatory functions
Kaushal, Anjali, Mohana, Giriram, Dorier, Julien, Özdemir, Isa, Omer, Arina, Cousin, Pascal, Semenova, Anastasiia, Taschner, Michael, Dergai, Oleksandr, Marzetta, Flavia, Iseli, Christian, Eliaz, Yossi, Weisz, David, Shamim, Muhammad Saad, Guex, Nicolas, Lieberman Aiden, Erez, Gambetta, Maria Cristina
Published in Nature communications (12.02.2021)
Published in Nature communications (12.02.2021)
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Journal Article
Control of Cognate Sense mRNA Translation by cis-Natural Antisense RNAs
Deforges, Jules, Reis, Rodrigo S, Jacquet, Philippe, Sheppard, Shaoline, Gadekar, Veerendra P, Hart-Smith, Gene, Tanzer, Andrea, Hofacker, Ivo L, Iseli, Christian, Xenarios, Ioannis, Poirier, Yves
Published in Plant physiology (Bethesda) (01.05.2019)
Published in Plant physiology (Bethesda) (01.05.2019)
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Journal Article
Inhibition of anti-tumor immunity by melanoma cell-derived Activin-A depends on STING
Pinjusic, Katarina, Ambrosini, Giovanna, Lourenco, Joao, Fournier, Nadine, Iseli, Christian, Guex, Nicolas, Egorova, Olga, Nassiri, Sina, Constam, Daniel B
Published in Frontiers in immunology (18.01.2024)
Published in Frontiers in immunology (18.01.2024)
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Journal Article
Probabilistic base calling of Solexa sequencing data
Rougemont, Jacques, Amzallag, Arnaud, Iseli, Christian, Farinelli, Laurent, Xenarios, Ioannis, Naef, Felix
Published in BMC bioinformatics (13.10.2008)
Published in BMC bioinformatics (13.10.2008)
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Journal Article
Virosaurus A Reference to Explore and Capture Virus Genetic Diversity
Gleizes, Anne, Laubscher, Florian, Guex, Nicolas, Iseli, Christian, Junier, Thomas, Cordey, Samuel, Fellay, Jacques, Xenarios, Ioannis, Kaiser, Laurent, Mercier, Philippe Le
Published in Viruses (01.11.2020)
Published in Viruses (01.11.2020)
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Journal Article
ZFN-site searches genomes for zinc finger nuclease target sites and off-target sites
Cradick, Thomas J, Ambrosini, Giovanna, Iseli, Christian, Bucher, Philipp, McCaffrey, Anton P
Published in BMC bioinformatics (13.05.2011)
Published in BMC bioinformatics (13.05.2011)
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Journal Article
Revisiting the specificity and ability of phospho-S129 antibodies to capture alpha-synuclein biochemical and pathological diversity
Lashuel, Hilal A., Mahul-Mellier, Anne-Laure, Novello, Salvatore, Hegde, Ramanath Narayana, Jasiqi, Yllza, Altay, Melek Firat, Donzelli, Sonia, DeGuire, Sean M., Burai, Ritwik, Magalhães, Pedro, Chiki, Anass, Ricci, Jonathan, Boussouf, Manel, Sadek, Ahmed, Stoops, Erik, Iseli, Christian, Guex, Nicolas
Published in NPJ Parkinson's Disease (20.10.2022)
Published in NPJ Parkinson's Disease (20.10.2022)
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Journal Article
Indexing strategies for rapid searches of short words in genome sequences
Iseli, Christian, Ambrosini, Giovanna, Bucher, Philipp, Jongeneel, C Victor
Published in PloS one (27.06.2007)
Published in PloS one (27.06.2007)
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Journal Article
Rapid evolution of cancer/testis genes on the X chromosome
Stevenson, Brian J, Iseli, Christian, Panji, Sumir, Zahn-Zabal, Monique, Hide, Winston, Old, Lloyd J, Simpson, Andrew J, Jongeneel, C Victor
Published in BMC genomics (23.05.2007)
Published in BMC genomics (23.05.2007)
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Journal Article
Blood virosphere in febrile Tanzanian children
Cordey, Samuel, Laubscher, Florian, Hartley, Mary-Anne, Junier, Thomas, Keitel, Kristina, Docquier, Mylène, Guex, Nicolas, Iseli, Christian, Vieille, Gael, Le Mercier, Philippe, Gleizes, Anne, Samaka, Josephine, Mlaganile, Tarsis, Kagoro, Frank, Masimba, John, Said, Zamzam, Temba, Hosiana, Elbanna, Gasser H., Tapparel, Caroline, Zanella, Marie-Celine, Xenarios, Ioannis, Fellay, Jacques, D'Acremont, Valérie, Kaiser, Laurent
Published in Emerging microbes & infections (01.01.2021)
Published in Emerging microbes & infections (01.01.2021)
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Journal Article
Transcriptome-guided characterization of genomic rearrangements in a breast cancer cell line
Zhao, Qi, Caballero, Otavia L, Levy, Samuel, Stevenson, Brian J, Iseli, Christian, de Souza, Sandro J, Galante, Pedro A, Busam, Dana, Leversha, Margaret A, Chadalavada, Kalyani, Rogers, Yu-Hui, Venter, J. Craig, Simpson, Andrew J.G, Strausberg, Robert L
Published in Proceedings of the National Academy of Sciences - PNAS (10.02.2009)
Published in Proceedings of the National Academy of Sciences - PNAS (10.02.2009)
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Journal Article
Network-guided analysis of genes with altered somatic copy number and gene expression reveals pathways commonly perturbed in metastatic melanoma
Valsesia, Armand, Rimoldi, Donata, Martinet, Danielle, Ibberson, Mark, Benaglio, Paola, Quadroni, Manfredo, Waridel, Patrice, Gaillard, Muriel, Pidoux, Mireille, Rapin, Blandine, Rivolta, Carlo, Xenarios, Ioannis, Simpson, Andrew J G, Antonarakis, Stylianos E, Beckmann, Jacques S, Jongeneel, C Victor, Iseli, Christian, Stevenson, Brian J
Published in PloS one (08.04.2011)
Published in PloS one (08.04.2011)
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Journal Article
Fourmidable: a database for ant genomics
Wurm, Yannick, Uva, Paolo, Ricci, Frédéric, Wang, John, Jemielity, Stephanie, Iseli, Christian, Falquet, Laurent, Keller, Laurent
Published in BMC genomics (06.01.2009)
Published in BMC genomics (06.01.2009)
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Journal Article
Similarities and differences of polyadenylation signals in human and fly
Retelska, Dorota, Iseli, Christian, Bucher, Philipp, Jongeneel, C Victor, Naef, Felix
Published in BMC genomics (12.07.2006)
Published in BMC genomics (12.07.2006)
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Journal Article
Extensive remodeling of DC function by rapid maturation-induced transcriptional silencing
Seguín-Estévez, Queralt, Dunand-Sauthier, Isabelle, Lemeille, Sylvain, Iseli, Christian, Ibberson, Mark, Ioannidis, Vassilios, Schmid, Christoph D, Rousseau, Philippe, Barras, Emmanuèle, Geinoz, Antoine, Xenarios, Ioannis, Acha-Orbea, Hans, Reith, Walter
Published in Nucleic acids research (01.09.2014)
Published in Nucleic acids research (01.09.2014)
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Journal Article
Establishment of the epithelial-specific transcriptome of normal and malignant human breast cells based on MPSS and array expression data
Grigoriadis, Anita, Mackay, Alan, Reis-Filho, Jorge S, Steele, Dawn, Iseli, Christian, Stevenson, Brian J, Jongeneel, C Victor, Valgeirsson, Haukur, Fenwick, Kerry, Iravani, Marjan, Leao, Maria, Simpson, Andrew J G, Strausberg, Robert L, Jat, Parmjit S, Ashworth, Alan, Neville, A Munro, O'Hare, Michael J
Published in Breast cancer research : BCR (01.01.2006)
Published in Breast cancer research : BCR (01.01.2006)
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Journal Article