Transcription factor–DNA binding: beyond binding site motifs
Inukai, Sachi, Kock, Kian Hong, Bulyk, Martha L
Published in Current opinion in genetics & development (01.04.2017)
Published in Current opinion in genetics & development (01.04.2017)
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Novel microRNAs differentially expressed during aging in the mouse brain
Inukai, Sachi, de Lencastre, Alexandre, Turner, Michael, Slack, Frank
Published in PloS one (23.07.2012)
Published in PloS one (23.07.2012)
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Age-associated changes in expression of small, noncoding RNAs, including microRNAs, in C. elegans
Kato, Masaomi, Chen, Xiaowei, Inukai, Sachi, Zhao, Hongyu, Slack, Frank J
Published in RNA (Cambridge) (01.10.2011)
Published in RNA (Cambridge) (01.10.2011)
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A microRNA feedback loop regulates global microRNA abundance during aging
Inukai, Sachi, Pincus, Zachary, de Lencastre, Alexandre, Slack, Frank J
Published in RNA (Cambridge) (01.02.2018)
Published in RNA (Cambridge) (01.02.2018)
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Single-cell multi-omics analysis identifies two distinct phenotypes of newly-onset microscopic polyangiitis
Nishide, Masayuki, Nishimura, Kei, Matsushita, Hiroaki, Edahiro, Ryuya, Inukai, Sachi, Shimagami, Hiroshi, Kawada, Shoji, Kato, Yasuhiro, Kawasaki, Takahiro, Tsujimoto, Kohei, Kamon, Hokuto, Omiya, Ryusuke, Okada, Yukinori, Hattori, Kunihiro, Narazaki, Masashi, Kumanogoh, Atsushi
Published in Nature communications (11.10.2023)
Published in Nature communications (11.10.2023)
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Survey of variation in human transcription factors reveals prevalent DNA binding changes
Barrera, Luis A., Vedenko, Anastasia, Kurland, Jesse V., Rogers, Julia M., Gisselbrecht, Stephen S., Rossin, Elizabeth J., Woodard, Jaie, Mariani, Luca, Kock, Kian Hong, Inukai, Sachi, Siggers, Trevor, Shokri, Leila, Gordân, Raluca, Sahni, Nidhi, Cotsapas, Chris, Hao, Tong, Yi, Song, Kellis, Manolis, Daly, Mark J., Vidal, Marc, Hill, David E., Bulyk, Martha L.
Published in Science (American Association for the Advancement of Science) (25.03.2016)
Published in Science (American Association for the Advancement of Science) (25.03.2016)
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A Comprehensive Drosophila melanogaster Transcription Factor Interactome
Shokri, Leila, Inukai, Sachi, Hafner, Antonina, Weinand, Kathryn, Hens, Korneel, Vedenko, Anastasia, Gisselbrecht, Stephen S., Dainese, Riccardo, Bischof, Johannes, Furger, Edy, Feuz, Jean-Daniel, Basler, Konrad, Deplancke, Bart, Bulyk, Martha L.
Published in Cell reports (Cambridge) (16.04.2019)
Published in Cell reports (Cambridge) (16.04.2019)
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DNA binding analysis of rare variants in homeodomains reveals homeodomain specificity-determining residues
Kock, Kian Hong, Kimes, Patrick K., Gisselbrecht, Stephen S., Inukai, Sachi, Phanor, Sabrina K., Anderson, James T., Ramakrishnan, Gayatri, Lipper, Colin H., Song, Dongyuan, Kurland, Jesse V., Rogers, Julia M., Jeong, Raehoon, Blacklow, Stephen C., Irizarry, Rafael A., Bulyk, Martha L.
Published in Nature communications (10.04.2024)
Published in Nature communications (10.04.2024)
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miR-34a Silences c-SRC to Attenuate Tumor Growth in Triple-Negative Breast Cancer
Adams, Brian D, Wali, Vikram B, Cheng, Christopher J, Inukai, Sachi, Booth, Carmen J, Agarwal, Seema, Rimm, David L, Győrffy, Balázs, Santarpia, Libero, Pusztai, Lajos, Saltzman, W Mark, Slack, Frank J
Published in Cancer research (Chicago, Ill.) (15.02.2016)
Published in Cancer research (Chicago, Ill.) (15.02.2016)
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Analysis of trace residues of tetracyclines in dark-colored honeys by high-performance liquid chromatography using polymeric cartridge and metal chelate affinity chromatography
Fujita, K.(Japan Food Research Labs., Suita, Osaka), Ito, H, Ishihara, M, Inukai, S, Tanaka, H, Taniguchi, M
Published in Food Hygiene and Safety Science (Shokuhin Eiseigaku Zasshi) (01.06.2008)
Published in Food Hygiene and Safety Science (Shokuhin Eiseigaku Zasshi) (01.06.2008)
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Abstract LB-300: Reintroduction of tumor-suppressor miR-34a shows therapeutic efficacy in triple-negative breast cancer
Adams, Brian D., Wali, Vikram, Cheng, Chris, Inukai, Sachi, Rimm, David, Pusztai, Lajos, Saltzman, Mark, Slack, Frank
Published in Cancer research (Chicago, Ill.) (01.08.2015)
Published in Cancer research (Chicago, Ill.) (01.08.2015)
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A new system for comparative functional genomics of Saccharomyces yeasts
Caudy, Amy A, Guan, Yuanfang, Jia, Yue, Hansen, Christina, DeSevo, Chris, Hayes, Alicia P, Agee, Joy, Alvarez-Dominguez, Juan R, Arellano, Hugo, Barrett, Daniel, Bauerle, Cynthia, Bisaria, Namita, Bradley, Patrick H, Breunig, J Scott, Bush, Erin, Cappel, David, Capra, Emily, Chen, Walter, Clore, John, Combs, Peter A, Doucette, Christopher, Demuren, Olukunle, Fellowes, Peter, Freeman, Sam, Frenkel, Evgeni, Gadala-Maria, Daniel, Gawande, Richa, Glass, David, Grossberg, Samuel, Gupta, Anita, Hammonds-Odie, Latanya, Hoisos, Aaron, Hsi, Jenny, Hsu, Yu-Han Huang, Inukai, Sachi, Karczewski, Konrad J, Ke, Xiaobo, Kojima, Mina, Leachman, Samuel, Lieber, Danny, Liebowitz, Anna, Liu, Julia, Liu, Yufei, Martin, Trevor, Mena, Jose, Mendoza, Rosa, Myhrvold, Cameron, Millian, Christian, Pfau, Sarah, Raj, Sandeep, Rich, Matt, Rokicki, Joe, Rounds, William, Salazar, Michael, Salesi, Matthew, Sharma, Rajani, Silverman, Sanford, Singer, Cara, Sinha, Sandhya, Staller, Max, Stern, Philip, Tang, Hanlin, Weeks, Sharon, Weidmann, Maxwell, Wolf, Ashley, Young, Carmen, Yuan, Jie, Crutchfield, Christopher, McClean, Megan, Murphy, Coleen T, Llinás, Manuel, Botstein, David, Troyanskaya, Olga G, Dunham, Maitreya J
Published in Genetics (Austin) (01.09.2013)
Published in Genetics (Austin) (01.09.2013)
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Identification of methylation-sensitive human transcription factors using meSMiLE-seq
Gralak, Antoni J, Faltejskova, Katerina, Yang, Ally W H, Steiner, Clemence, Russeil, Julie, Grenningloh, Nadia, Inukai, Sachi, Demir, Mustafa, Dainese, Riccardo, Owen, Cooper, Pankevich, Eugenia, Hughes, Timothy R, Kulakovskiy, Ivan V, Kribelbauer-Swietek, Judith F, van Mierlo, Guido, Deplancke, Bart
Published in bioRxiv (12.11.2024)
Published in bioRxiv (12.11.2024)
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Perspectives on Codebook: sequence specificity of uncharacterized human transcription factors
Jolma, Arttu, Laverty, Kaitlin U, Fathi, Ali, Yang, Ally W H, Yellan, Isaac, Vorontsov, Ilya E, Inukai, Sachi, Kribelbauer-Swietek, Judith F, Gralak, Antoni J, Razavi, Rozita, Albu, Mihai, Brechalov, Alexander, Patel, Zain M, Nozdrin, Vladimir, Meshcheryakov, Georgy, Kozin, Ivan, Abramov, Sergey, Boytsov, Alexandr, Fornes, Oriol, Makeev, Vsevolod J, Grau, Jan, Grosse, Ivo, Bucher, Philipp, Deplancke, Bart, Kulakovskiy, Ivan V, Hughes, Timothy R
Published in bioRxiv (12.11.2024)
Published in bioRxiv (12.11.2024)
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Widespread variation in molecular interactions and regulatory properties among transcription factor isoforms
Lambourne, Luke, Mattioli, Kaia, Santoso, Clarissa, Sheynkman, Gloria, Inukai, Sachi, Kaundal, Babita, Berenson, Anna, Spirohn-Fitzgerald, Kerstin, Bhattacharjee, Anukana, Rothman, Elisabeth, Shrestha, Shaleen, Laval, Florent, Yang, Zhipeng, Bisht, Deepa, Sewell, Jared A, Li, Guangyuan, Prasad, Anisa, Phanor, Sabrina, Lane, Ryan, Campbell, Devlin M, Hunt, Toby, Balcha, Dawit, Gebbia, Marinella, Twizere, Jean-Claude, Hao, Tong, Frankish, Adam, Riback, Josh A, Salomonis, Nathan, Calderwood, Michael A, Hill, David E, Sahni, Nidhi, Vidal, Marc, Bulyk, Martha L, Fuxman Bass, Juan I
Published in bioRxiv : the preprint server for biology (10.04.2024)
Published in bioRxiv : the preprint server for biology (10.04.2024)
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Cross-platform DNA motif discovery and benchmarking to explore binding specificities of poorly studied human transcription factors
Vorontsov, Ilya E, Kozin, Ivan, Abramov, Sergey, Boytsov, Alexandr, Jolma, Arttu, Albu, Mihai, Ambrosini, Giovanna, Faltejskova, Katerina, Gralak, Antoni J, Gryzunov, Nikita, Inukai, Sachi, Kolmykov, Semyon, Kravchenko, Pavel, Kribelbauer-Swietek, Judith F, Laverty, Kaitlin U, Nozdrin, Vladimir, Patel, Zain M, Penzar, Dmitry, Plescher, Marie-Luise, Pour, Sara E, Razavi, Rozita, Yang, Ally W H, Yevshin, Ivan, Zinkevich, Arsenii, Weirauch, Matthew T, Bucher, Philipp, Deplancke, Bart, Fornes, Oriol, Grau, Jan, Grosse, Ivo, Kolpakov, Fedor A, Makeev, Vsevolod J, Hughes, Timothy R, Kulakovskiy, Ivan V
Published in bioRxiv (13.11.2024)
Published in bioRxiv (13.11.2024)
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