Identification and Massively Parallel Characterization of Regulatory Elements Driving Neural Induction
Inoue, Fumitaka, Kreimer, Anat, Ashuach, Tal, Ahituv, Nadav, Yosef, Nir
Published in Cell stem cell (07.11.2019)
Published in Cell stem cell (07.11.2019)
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Journal Article
A systematic evaluation of the design and context dependencies of massively parallel reporter assays
Klein, Jason C, Agarwal, Vikram, Inoue, Fumitaka, Keith, Aidan, Martin, Beth, Kircher, Martin, Ahituv, Nadav, Shendure, Jay
Published in Nature methods (01.11.2020)
Published in Nature methods (01.11.2020)
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Journal Article
Saturation mutagenesis of twenty disease-associated regulatory elements at single base-pair resolution
Kircher, Martin, Xiong, Chenling, Martin, Beth, Schubach, Max, Inoue, Fumitaka, Bell, Robert J A, Costello, Joseph F, Shendure, Jay, Ahituv, Nadav
Published in Nature communications (08.08.2019)
Published in Nature communications (08.08.2019)
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Journal Article
Massively parallel reporter perturbation assays uncover temporal regulatory architecture during neural differentiation
Kreimer, Anat, Ashuach, Tal, Inoue, Fumitaka, Khodaverdian, Alex, Deng, Chengyu, Yosef, Nir, Ahituv, Nadav
Published in Nature communications (21.03.2022)
Published in Nature communications (21.03.2022)
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Journal Article
A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity
Inoue, Fumitaka, Kircher, Martin, Martin, Beth, Cooper, Gregory M, Witten, Daniela M, McManus, Michael T, Ahituv, Nadav, Shendure, Jay
Published in Genome research (01.01.2017)
Published in Genome research (01.01.2017)
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Journal Article
lentiMPRA and MPRAflow for high-throughput functional characterization of gene regulatory elements
Gordon, M Grace, Inoue, Fumitaka, Martin, Beth, Schubach, Max, Agarwal, Vikram, Whalen, Sean, Feng, Shiyun, Zhao, Jingjing, Ashuach, Tal, Ziffra, Ryan, Kreimer, Anat, Georgakopoulos-Soares, Ilias, Yosef, Nir, Ye, Chun Jimmie, Pollard, Katherine S, Shendure, Jay, Kircher, Martin, Ahituv, Nadav
Published in Nature protocols (01.08.2020)
Published in Nature protocols (01.08.2020)
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Journal Article
The cis -regulatory effects of modern human-specific variants
Weiss, Carly V, Harshman, Lana, Inoue, Fumitaka, Fraser, Hunter B, Petrov, Dmitri A, Ahituv, Nadav, Gokhman, David
Published in eLife (22.04.2021)
Published in eLife (22.04.2021)
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Journal Article
Massively parallel decoding of mammalian regulatory sequences supports a flexible organizational model
Smith, Robin P, Taher, Leila, Patwardhan, Rupali P, Kim, Mee J, Inoue, Fumitaka, Shendure, Jay, Ovcharenko, Ivan, Ahituv, Nadav
Published in Nature genetics (01.09.2013)
Published in Nature genetics (01.09.2013)
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Journal Article
Transcription factor binding site orientation and order are major drivers of gene regulatory activity
Georgakopoulos-Soares, Ilias, Deng, Chengyu, Agarwal, Vikram, Chan, Candace S Y, Zhao, Jingjing, Inoue, Fumitaka, Ahituv, Nadav
Published in Nature communications (22.04.2023)
Published in Nature communications (22.04.2023)
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Journal Article
Machine learning dissection of human accelerated regions in primate neurodevelopment
Whalen, Sean, Inoue, Fumitaka, Ryu, Hane, Fair, Tyler, Markenscoff-Papadimitriou, Eirene, Keough, Kathleen, Kircher, Martin, Martin, Beth, Alvarado, Beatriz, Elor, Orry, Laboy Cintron, Dianne, Williams, Alex, Hassan Samee, Md. Abul, Thomas, Sean, Krencik, Robert, Ullian, Erik M., Kriegstein, Arnold, Rubenstein, John L., Shendure, Jay, Pollen, Alex A., Ahituv, Nadav, Pollard, Katherine S.
Published in Neuron (Cambridge, Mass.) (15.03.2023)
Published in Neuron (Cambridge, Mass.) (15.03.2023)
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A Nosocomial Outbreak Caused by Human Rhinovirus Species A Type 61 in a Welfare Facility in Gunma Prefecture, Japan
Shimada, Ryo, Tsukagoshi, Hiroyuki, Kubota, Rina, Shinoda, Daisuke, Shinohara, Yuri, Saito, Akio, Inoue, Fumitaka, Endo, Tadaaki, Saruki, Nobuhiro
Published in Japanese Journal of Infectious Diseases (31.07.2023)
Published in Japanese Journal of Infectious Diseases (31.07.2023)
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Journal Article
Characterization of De Novo Promoter Variants in Autism Spectrum Disorder with Massively Parallel Reporter Assays
Koesterich, Justin, An, Joon-Yong, Inoue, Fumitaka, Sohota, Ajuni, Ahituv, Nadav, Sanders, Stephan J, Kreimer, Anat
Published in International journal of molecular sciences (01.02.2023)
Published in International journal of molecular sciences (01.02.2023)
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Journal Article
Characterization of enhancer activity in early human neurodevelopment using Massively Parallel Reporter Assay (MPRA) and forebrain organoids
Capauto, Davide, Wang, Yifan, Wu, Feinan, Norton, Scott, Mariani, Jessica, Inoue, Fumitaka, Crawford, Gregory E, Ahituv, Nadav, Abyzov, Alexej, Vaccarino, Flora M
Published in Scientific reports (16.02.2024)
Published in Scientific reports (16.02.2024)
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Journal Article
Effects of Fatty Acid Therapy in Addition to Strong Statin on Coronary Plaques in Acute Coronary Syndrome: An Optical Coherence Tomography Study
Kita, Yoko, Watanabe, Makoto, Kamon, Daisuke, Ueda, Tomoya, Soeda, Tsunenari, Okayama, Satoshi, Ishigami, Kenichi, Kawata, Hiroyuki, Horii, Manabu, Inoue, Fumitaka, Doi, Naofumi, Okura, Hiroyuki, Uemura, Shiro, Saito, Yoshihiko
Published in Journal of the American Heart Association (18.08.2020)
Published in Journal of the American Heart Association (18.08.2020)
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Journal Article
High-throughput characterization of the role of non-B DNA motifs on promoter function
Georgakopoulos-Soares, Ilias, Victorino, Jesus, Parada, Guillermo E., Agarwal, Vikram, Zhao, Jingjing, Wong, Hei Yuen, Umar, Mubarak Ishaq, Elor, Orry, Muhwezi, Allan, An, Joon-Yong, Sanders, Stephan J., Kwok, Chun Kit, Inoue, Fumitaka, Hemberg, Martin, Ahituv, Nadav
Published in Cell genomics (13.04.2022)
Published in Cell genomics (13.04.2022)
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Journal Article
Feeding interval and postprandial intestinal blood flow in premature infants
Maruyama, Kenichi, Fujiu, Toru, Inoue, Takahiro, Koizumi, Aya, Inoue, Fumitaka
Published in Pediatrics international (01.08.2013)
Published in Pediatrics international (01.08.2013)
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