Enzyme Function Initiative-Enzyme Similarity Tool (EFI-EST): A web tool for generating protein sequence similarity networks
Gerlt, John A., Bouvier, Jason T., Davidson, Daniel B., Imker, Heidi J., Sadkhin, Boris, Slater, David R., Whalen, Katie L.
Published in Biochimica et biophysica acta (01.08.2015)
Published in Biochimica et biophysica acta (01.08.2015)
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Journal Article
A machine learning-enabled open biodata resource inventory from the scientific literature
Imker, Heidi J, Schackart, Kenneth E, Istrate, Ana-Maria, Cook, Charles E
Published in PloS one (28.11.2023)
Published in PloS one (28.11.2023)
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Journal Article
Activation of the Pacidamycin PacL Adenylation Domain by MbtH-like Proteins
Zhang, Wenjun, Heemstra, John R, Walsh, Christopher T, Imker, Heidi J
Published in Biochemistry (Easton) (23.11.2010)
Published in Biochemistry (Easton) (23.11.2010)
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Journal Article
The Pseudomonas aeruginosa antimetabolite L -2-amino-4-methoxy-trans-3-butenoic acid (AMB) is made from glutamate and two alanine residues via a thiotemplate-linked tripeptide precursor
Rojas Murcia, Nelson, Lee, Xiaoyun, Waridel, Patrice, Maspoli, Alessandro, Imker, Heidi J, Chai, Tiancong, Walsh, Christopher T, Reimmann, Cornelia
Published in Frontiers in microbiology (2015)
Published in Frontiers in microbiology (2015)
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Journal Article
Homology models guide discovery of diverse enzyme specificities among dipeptide epimerases in the enolase superfamily
Lukk, Tiit, Sakai, Ayano, Kalyanaraman, Chakrapani, Brown, Shoshana D, Imker, Heidi J, Song, Ling, Fedorov, Alexander A, Fedorov, Elena V, Toro, Rafael, Hillerich, Brandan, Seidel, Ronald, Patskovsky, Yury, Vetting, Matthew W, Nair, Satish K, Babbitt, Patricia C, Almo, Steven C, Gerlt, John A, Jacobson, Matthew P
Published in Proceedings of the National Academy of Sciences - PNAS (13.03.2012)
Published in Proceedings of the National Academy of Sciences - PNAS (13.03.2012)
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Journal Article
Prediction and assignment of function for a divergent N -succinyl amino acid racemase
Jacobson, Matthew P, Gerlt, John A, Song, Ling, Kalyanaraman, Chakrapani, Fedorov, Alexander A, Fedorov, Elena V, Glasner, Margaret E, Brown, Shoshana, Imker, Heidi J, Babbitt, Patricia C, Almo, Steven C
Published in Nature chemical biology (01.08.2007)
Published in Nature chemical biology (01.08.2007)
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Journal Article
Mechanism of the Orotidine 5′-Monophosphate Decarboxylase-Catalyzed Reaction: Evidence for Substrate Destabilization
Chan, Kui K, Wood, B. McKay, Fedorov, Alexander A, Fedorov, Elena V, Imker, Heidi J, Amyes, Tina L, Richard, John P, Almo, Steven C, Gerlt, John A
Published in Biochemistry (Easton) (23.06.2009)
Published in Biochemistry (Easton) (23.06.2009)
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Journal Article
Discovery of a Dipeptide Epimerase Enzymatic Function Guided by Homology Modeling and Virtual Screening
Kalyanaraman, Chakrapani, Imker, Heidi J., Fedorov, Alexander A., Fedorov, Elena V., Glasner, Margaret E., Babbitt, Patricia C., Almo, Steven C., Gerlt, John A., Jacobson, Matthew P.
Published in Structure (London) (12.11.2008)
Published in Structure (London) (12.11.2008)
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Journal Article
Mechanistic Diversity in the RuBisCO Superfamily: A Novel Isomerization Reaction Catalyzed by the RuBisCO-like Protein from Rhodospirillum rubrum
Imker, Heidi J, Singh, Jaya, Warlick, Benjamin P, Tabita, F. Robert, Gerlt, John A
Published in Biochemistry (Easton) (28.10.2008)
Published in Biochemistry (Easton) (28.10.2008)
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Journal Article
Detailed Implementation of a Reproducible Machine Learning-Enabled Workflow
Schackart, Kenneth E., Imker, Heidi J., Cook, Charles E.
Published in Data science journal (29.04.2024)
Published in Data science journal (29.04.2024)
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Journal Article
The Enzyme Function Initiative
Gerlt, John A, Allen, Karen N, Almo, Steven C, Armstrong, Richard N, Babbitt, Patricia C, Cronan, John E, Dunaway-Mariano, Debra, Imker, Heidi J, Jacobson, Matthew P, Minor, Wladek, Poulter, C. Dale, Raushel, Frank M, Sali, Andrej, Shoichet, Brian K, Sweedler, Jonathan V
Published in Biochemistry (Easton) (22.11.2011)
Published in Biochemistry (Easton) (22.11.2011)
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Journal Article
A RubisCO-like protein links SAM metabolism with isoprenoid biosynthesis
Erb, Tobias J, Evans, Bradley S, Cho, Kyuil, Warlick, Benjamin P, Sriram, Jaya, Wood, B McKay, Imker, Heidi J, Sweedler, Jonathan V, Tabita, F Robert, Gerlt, John A
Published in Nature chemical biology (01.11.2012)
Published in Nature chemical biology (01.11.2012)
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Journal Article
Assessing the state of research data publication in hydrology: A perspective from the Consortium of Universities for the Advancement of Hydrologic Science, Incorporated
Horsburgh, Jeffery S., Hooper, Richard P., Bales, Jerad, Hedstrom, Margaret, Imker, Heidi J., Lehnert, Kerstin A., Shanley, Lea A., Stall, Shelley
Published in Wiley interdisciplinary reviews. Water (01.05.2020)
Published in Wiley interdisciplinary reviews. Water (01.05.2020)
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Journal Article
Mechanistic Diversity in the RuBisCO Superfamily: RuBisCO from Rhodospirillum rubrum Is Not Promiscuous for Reactions Catalyzed by RuBisCO-like Proteins
Warlick, Benjamin P. E, Imker, Heidi J, Sriram, Jaya, Tabita, F. Robert, Gerlt, John A
Published in Biochemistry (Easton) (27.11.2012)
Published in Biochemistry (Easton) (27.11.2012)
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Journal Article
1‑Methylthio‑d‑xylulose 5‑Phosphate Methylsulfurylase: A Novel Route to 1‑Deoxy‑d‑xylulose 5‑Phosphate in Rhodospirillum rubrum
Warlick, Benjamin P, Evans, Bradley S, Erb, Tobias J, Ramagopal, Udipi A, Sriram, Jaya, Imker, Heidi J, Sauder, J. Michael, Bonanno, Jeffrey B, Burley, Stephen K, Tabita, F. Robert, Almo, Steven C, Sweedler, Jonathan S, Gerlt, John A
Published in Biochemistry (Easton) (23.10.2012)
Published in Biochemistry (Easton) (23.10.2012)
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Journal Article