The airborne transmission of viruses causes tight transmission bottlenecks
Sinclair, Patrick, Zhao, Lei, Beggs, Clive B., Illingworth, Christopher J. R.
Published in Nature communications (26.04.2024)
Published in Nature communications (26.04.2024)
Get full text
Journal Article
Building a mechanistic mathematical model of hepatitis C virus entry
Kalemera, Mphatso, Mincheva, Dilyana, Grove, Joe, Illingworth, Christopher J R
Published in PLoS computational biology (01.03.2019)
Published in PLoS computational biology (01.03.2019)
Get full text
Journal Article
Population genomic and evolutionary modelling analyses reveal a single major QTL for ivermectin drug resistance in the pathogenic nematode, Haemonchus contortus
Doyle, Stephen R, Illingworth, Christopher J R, Laing, Roz, Bartley, David J, Redman, Elizabeth, Martinelli, Axel, Holroyd, Nancy, Morrison, Alison A, Rezansoff, Andrew, Tracey, Alan, Devaney, Eileen, Berriman, Matthew, Sargison, Neil, Cotton, James A, Gilleard, John S
Published in BMC genomics (15.03.2019)
Published in BMC genomics (15.03.2019)
Get full text
Journal Article
Single-cell RNA-seq reveals hidden transcriptional variation in malaria parasites
Reid, Adam J, Talman, Arthur M, Bennett, Hayley M, Gomes, Ana R, Sanders, Mandy J, Illingworth, Christopher J R, Billker, Oliver, Berriman, Matthew, Lawniczak, Mara Kn
Published in eLife (27.03.2018)
Published in eLife (27.03.2018)
Get full text
Journal Article
Rapid identification of genes controlling virulence and immunity in malaria parasites
Abkallo, Hussein M, Martinelli, Axel, Inoue, Megumi, Ramaprasad, Abhinay, Xangsayarath, Phonepadith, Gitaka, Jesse, Tang, Jianxia, Yahata, Kazuhide, Zoungrana, Augustin, Mitaka, Hayato, Acharjee, Arita, Datta, Partha P, Hunt, Paul, Carter, Richard, Kaneko, Osamu, Mustonen, Ville, Illingworth, Christopher J R, Pain, Arnab, Culleton, Richard
Published in PLoS pathogens (12.07.2017)
Published in PLoS pathogens (12.07.2017)
Get full text
Journal Article
Evaluating genetic drift in time-series evolutionary analysis
R. Nené, Nuno, Mustonen, Ville, J. R. Illingworth, Christopher
Published in Journal of theoretical biology (21.01.2018)
Published in Journal of theoretical biology (21.01.2018)
Get full text
Journal Article
The effective rate of influenza reassortment is limited during human infection
Sobel Leonard, Ashley, McClain, Micah T, Smith, Gavin J D, Wentworth, David E, Halpin, Rebecca A, Lin, Xudong, Ransier, Amy, Stockwell, Timothy B, Das, Suman R, Gilbert, Anthony S, Lambkin-Williams, Rob, Ginsburg, Geoffrey S, Woods, Christopher W, Koelle, Katia, Illingworth, Christopher J R
Published in PLoS pathogens (01.02.2017)
Published in PLoS pathogens (01.02.2017)
Get full text
Journal Article
Identifying selection in the within-host evolution of influenza using viral sequence data
Illingworth, Christopher J R, Fischer, Andrej, Mustonen, Ville
Published in PLoS computational biology (01.07.2014)
Published in PLoS computational biology (01.07.2014)
Get full text
Journal Article
An entropic safety catch controls hepatitis C virus entry and antibody resistance
Stejskal, Lenka, Kalemera, Mphatso D, Lewis, Charlotte B, Palor, Machaela, Walker, Lucas, Daviter, Tina, Lees, William D, Moss, David S, Kremyda-Vlachou, Myrto, Kozlakidis, Zisis, Gallo, Giulia, Bailey, Dalan, Rosenberg, William, Illingworth, Christopher J R, Shepherd, Adrian J, Grove, Joe
Published in eLife (07.07.2022)
Published in eLife (07.07.2022)
Get full text
Journal Article
A de novo approach to inferring within-host fitness effects during untreated HIV-1 infection
Illingworth, Christopher J. R., Raghwani, Jayna, Serwadda, David, Sewankambo, Nelson K., Robb, Merlin L., Eller, Michael A., Redd, Andrew R., Quinn, Thomas C., Lythgoe, Katrina A.
Published in PLoS pathogens (01.06.2020)
Published in PLoS pathogens (01.06.2020)
Get full text
Journal Article
Re-engineering SAM or Changing the Engine in the Train While it is Running
Illingworth, R., Mengel, M., Norman, A.
Published in Journal of physics. Conference series (23.12.2015)
Published in Journal of physics. Conference series (23.12.2015)
Get full text
Journal Article
Design of the protoDUNE raw data management infrastructure
Fuess, S, Illingworth, R, Mengel, M, Norman, A, Potekhin, M, Viren, B
Published in Journal of physics. Conference series (01.10.2017)
Published in Journal of physics. Conference series (01.10.2017)
Get full text
Journal Article
Large Scale Management of Physicists Personal Analysis Data Without Employing User and Group Quotas
Norman, A., Diesbug, M., Gheith, M., Illingworth, R., Lyon, A., Mengel, M.
Published in Journal of physics. Conference series (01.01.2015)
Published in Journal of physics. Conference series (01.01.2015)
Get full text
Journal Article