Piphillin: Improved Prediction of Metagenomic Content by Direct Inference from Human Microbiomes
Iwai, Shoko, Weinmaier, Thomas, Schmidt, Brian L, Albertson, Donna G, Poloso, Neil J, Dabbagh, Karim, DeSantis, Todd Z
Published in PloS one (07.11.2016)
Published in PloS one (07.11.2016)
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Piphillin predicts metagenomic composition and dynamics from DADA2-corrected 16S rDNA sequences
Narayan, Nicole R, Weinmaier, Thomas, Laserna-Mendieta, Emilio J, Claesson, Marcus J, Shanahan, Fergus, Dabbagh, Karim, Iwai, Shoko, DeSantis, Todd Z
Published in BMC genomics (17.01.2020)
Published in BMC genomics (17.01.2020)
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Multi-angle meta-analysis of the gut microbiome in Autism Spectrum Disorder: a step toward understanding patient subgroups
West, Kiana A., Yin, Xiaochen, Rutherford, Erica M., Wee, Brendan, Choi, Jinlyung, Chrisman, Brianna S., Dunlap, Kaiti L., Hannibal, Roberta L., Hartono, Wiputra, Lin, Michelle, Raack, Edward, Sabino, Kayleen, Wu, Yonggan, Wall, Dennis P., David, Maude M., Dabbagh, Karim, DeSantis, Todd Z., Iwai, Shoko
Published in Scientific reports (11.10.2022)
Published in Scientific reports (11.10.2022)
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Topic modeling for multi-omic integration in the human gut microbiome and implications for Autism
Tataru, Christine, Peras, Marie, Rutherford, Erica, Dunlap, Kaiti, Yin, Xiaochen, Chrisman, Brianna S., DeSantis, Todd Z., Wall, Dennis P., Iwai, Shoko, David, Maude M.
Published in Scientific reports (13.07.2023)
Published in Scientific reports (13.07.2023)
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Oral and Airway Microbiota in HIV-Infected Pneumonia Patients
IWAI, Shoko, FEL, Matthew, HUANG, Delphine, FONG, Serena, SUBRAMANIAN, Anuradha, GRIECO, Katherine, LYNCH, Susan V, HUANG, Laurence
Published in Journal of Clinical Microbiology (01.09.2012)
Published in Journal of Clinical Microbiology (01.09.2012)
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Improved detection of disease-associated gut microbes using 16S sequence-based biomarkers
Chrisman, Brianna S, Paskov, Kelley M, Stockham, Nate, Jung, Jae-Yoon, Varma, Maya, Washington, Peter Y, Tataru, Christine, Iwai, Shoko, DeSantis, Todd Z, David, Maude, Wall, Dennis P
Published in BMC bioinformatics (19.10.2021)
Published in BMC bioinformatics (19.10.2021)
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A Comparative Evaluation of Tools to Predict Metabolite Profiles From Microbiome Sequencing Data
Yin, Xiaochen, Altman, Tomer, Rutherford, Erica, West, Kiana A, Wu, Yonggan, Choi, Jinlyung, Beck, Paul L, Kaplan, Gilaad G, Dabbagh, Karim, DeSantis, Todd Z, Iwai, Shoko
Published in Frontiers in microbiology (04.12.2020)
Published in Frontiers in microbiology (04.12.2020)
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Gene-targeted-metagenomics reveals extensive diversity of aromatic dioxygenase genes in the environment
Iwai, Shoko, Chai, Benli, Sul, Woo Jun, Cole, James R, Hashsham, Syed A, Tiedje, James M
Published in The ISME Journal (01.02.2010)
Published in The ISME Journal (01.02.2010)
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The lung microbiome of Ugandan HIV-infected pneumonia patients is compositionally and functionally distinct from that of San Franciscan patients
Iwai, Shoko, Huang, Delphine, Fong, Serena, Jarlsberg, Leah G, Worodria, William, Yoo, Samuel, Cattamanchi, Adithya, Davis, J Lucian, Kaswabuli, Sylvia, Segal, Mark, Huang, Laurence, Lynch, Susan V
Published in PloS one (01.04.2014)
Published in PloS one (01.04.2014)
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Strain level and comprehensive microbiome analysis in inflammatory bowel disease via multi-technology meta-analysis identifies key bacterial influencers of disease
Ravichandar, Jayamary Divya, Rutherford, Erica, Chow, Cheryl-Emiliane T., Han, Andrew, Yamamoto, Mitsuko Lynn, Narayan, Nicole, Kaplan, Gilaad G., Beck, Paul L., Claesson, Marcus J., Dabbagh, Karim, Iwai, Shoko, DeSantis, Todd Z.
Published in Frontiers in microbiology (14.10.2022)
Published in Frontiers in microbiology (14.10.2022)
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Correction to: Piphillin predicts metagenomic composition and dynamics from DADA2- corrected 16S rDNA sequences
Narayan, Nicole R, Weinmaier, Thomas, Laserna-Mendieta, Emilio J, Claesson, Marcus J, Shanahan, Fergus, Dabbagh, Karim, Iwai, Shoko, DeSantis, Todd Z
Published in BMC genomics (31.01.2020)
Published in BMC genomics (31.01.2020)
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Sphingomonas wittichii Strain RW1 Genome-Wide Gene Expression Shifts in Response to Dioxins and Clay
Chai, Benli, Tsoi, Tamara V, Iwai, Shoko, Liu, Cun, Fish, Jordan A, Gu, Cheng, Johnson, Timothy A, Zylstra, Gerben, Teppen, Brian J, Li, Hui, Hashsham, Syed A, Boyd, Stephen A, Cole, James R, Tiedje, James M
Published in PloS one (16.06.2016)
Published in PloS one (16.06.2016)
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StrainSelect: A novel microbiome reference database that disambiguates all bacterial strains, genome assemblies and extant cultures worldwide
DeSantis, Todd Z., Cardona, Cesar, Narayan, Nicole R., Viswanatham, Satish, Ravichandar, Divya, Wee, Brendan, Chow, Cheryl-Emiliane, Iwai, Shoko
Published in Heliyon (01.02.2023)
Published in Heliyon (01.02.2023)
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Novel Biphenyl-Oxidizing Bacteria and Dioxygenase Genes from a Korean Tidal Mudflat
TAE KWON LEE, LEE, Jaejin, WOO JUN SUL, IWAI, Shoko, CHAI, Benli, TIEDJE, James M, PARK, Joonhong
Published in Applied and Environmental Microbiology (01.06.2011)
Published in Applied and Environmental Microbiology (01.06.2011)
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Prevalence of depressive symptoms in Japanese male patients with chronic obstructive pulmonary disease
Hayashi, Yoshika, Senjyu, Hideaki, Iguchi, Asuka, Iwai, Shoko, Kanada, Rumi, Honda, Sumihisa, Ozawa, Hiroki
Published in Psychiatry and clinical neurosciences (01.02.2011)
Published in Psychiatry and clinical neurosciences (01.02.2011)
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Factors that Impact Anxiety and Depression in Patients with Chronic Obstructive Pulmonary Disease
Kaneda, Rumi, Senjyu, Hideaki, Iguchi, Asuka, Hayashi, Yoshika, Iwai, Shoko, Tsuda, Toru, Ozawa, Hiroki, Honda, Sumihisa
Published in Journal of Physical Therapy Science (2011)
Published in Journal of Physical Therapy Science (2011)
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Personality Traits of Patients with Chronic Obstructive Pulmonary Disease Who Exhibit Depression
Iwai, Shoko, Senjyu, Hideaki, Kaneda, Rumi, Iguchi, Asuka, Hayashi, Yoshika, Ozawa, Hiroki, Honda, Sumihisa, Higashijima, Misako
Published in Journal of Physical Therapy Science (2010)
Published in Journal of Physical Therapy Science (2010)
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Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism
Vujkovic-Cvijin, Ivan, Dunham, Richard M, Iwai, Shoko, Maher, Michael C, Albright, Rebecca G, Broadhurst, Mara J, Hernandez, Ryan D, Lederman, Michael M, Huang, Yong, Somsouk, Ma, Deeks, Steven G, Hunt, Peter W, Lynch, Susan V, McCune, Joseph M
Published in Science translational medicine (10.07.2013)
Published in Science translational medicine (10.07.2013)
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