Platanus-allee is a de novo haplotype assembler enabling a comprehensive access to divergent heterozygous regions
Kajitani, Rei, Yoshimura, Dai, Okuno, Miki, Minakuchi, Yohei, Kagoshima, Hiroshi, Fujiyama, Asao, Kubokawa, Kaoru, Kohara, Yuji, Toyoda, Atsushi, Itoh, Takehiko
Published in Nature communications (12.04.2019)
Published in Nature communications (12.04.2019)
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Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads
Kajitani, Rei, Toshimoto, Kouta, Noguchi, Hideki, Toyoda, Atsushi, Ogura, Yoshitoshi, Okuno, Miki, Yabana, Mitsuru, Harada, Masayuki, Nagayasu, Eiji, Maruyama, Haruhiko, Kohara, Yuji, Fujiyama, Asao, Hayashi, Tetsuya, Itoh, Takehiko
Published in Genome research (01.08.2014)
Published in Genome research (01.08.2014)
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Targeted base editing in the plastid genome of Arabidopsis thaliana
Nakazato, Issei, Okuno, Miki, Yamamoto, Hiroshi, Tamura, Yoshiko, Itoh, Takehiko, Shikanai, Toshiharu, Takanashi, Hideki, Tsutsumi, Nobuhiro, Arimura, Shin-ichi
Published in Nature plants (01.07.2021)
Published in Nature plants (01.07.2021)
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Evolutionary History of Sexual Differentiation Mechanism in Insects
Chikami, Yasuhiko, Okuno, Miki, Toyoda, Atsushi, Itoh, Takehiko, Niimi, Teruyuki
Published in Molecular biology and evolution (02.07.2022)
Published in Molecular biology and evolution (02.07.2022)
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Targeted gene disruption of ATP synthases 6‐1 and 6‐2 in the mitochondrial genome of Arabidopsis thaliana by mitoTALENs
Arimura, Shin‐ichi, Ayabe, Hiroki, Sugaya, Hajime, Okuno, Miki, Tamura, Yoshiko, Tsuruta, Yu, Watari, Yuta, Yanase, Shungo, Yamauchi, Takaki, Itoh, Takehiko, Toyoda, Atsushi, Takanashi, Hideki, Tsutsumi, Nobuhiro
Published in The Plant journal : for cell and molecular biology (01.12.2020)
Published in The Plant journal : for cell and molecular biology (01.12.2020)
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Bioinformatic and fine-scale chromosomal mapping reveal the nature and evolution of eliminated chromosomes in the Japanese hagfish, Eptatretus burgeri, through analysis of repetitive DNA families
Nagao, Kohei, Tanaka, Yoshiki, Kajitani, Rei, Toyoda, Atsushi, Itoh, Takehiko, Kubota, Souichirou, Goto, Yuji
Published in PloS one (28.08.2023)
Published in PloS one (28.08.2023)
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Genomics and transcriptomics of the green mussel explain the durability of its byssus
Inoue, Koji, Yoshioka, Yuki, Tanaka, Hiroyuki, Kinjo, Azusa, Sassa, Mieko, Ueda, Ikuo, Shinzato, Chuya, Toyoda, Atsushi, Itoh, Takehiko
Published in Scientific reports (16.03.2021)
Published in Scientific reports (16.03.2021)
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Comparison of the sequencing bias of currently available library preparation kits for Illumina sequencing of bacterial genomes and metagenomes
Sato, Mitsuhiko P, Ogura, Yoshitoshi, Nakamura, Keiji, Nishida, Ruriko, Gotoh, Yasuhiro, Hayashi, Masahiro, Hisatsune, Junzo, Sugai, Motoyuki, Takehiko, Itoh, Hayashi, Tetsuya
Published in DNA research (01.10.2019)
Published in DNA research (01.10.2019)
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Expression profiling of sexually dimorphic genes in the Japanese quail, Coturnix japonica
Okuno, Miki, Miyamoto, Shuntaro, Itoh, Takehiko, Seki, Masahide, Suzuki, Yutaka, Mizushima, Shusei, Kuroiwa, Asato
Published in Scientific reports (30.11.2020)
Published in Scientific reports (30.11.2020)
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The genomic basis of parasitism in the Strongyloides clade of nematodes
Hunt, Vicky L, Tsai, Isheng J, Coghlan, Avril, Reid, Adam J, Holroyd, Nancy, Foth, Bernardo J, Tracey, Alan, Cotton, James A, Stanley, Eleanor J, Beasley, Helen, Bennett, Hayley M, Brooks, Karen, Harsha, Bhavana, Kajitani, Rei, Kulkarni, Arpita, Harbecke, Dorothee, Nagayasu, Eiji, Nichol, Sarah, Ogura, Yoshitoshi, Quail, Michael A, Randle, Nadine, Xia, Dong, Brattig, Norbert W, Soblik, Hanns, Ribeiro, Diogo M, Sanchez-Flores, Alejandro, Hayashi, Tetsuya, Itoh, Takehiko, Denver, Dee R, Grant, Warwick, Stoltzfus, Jonathan D, Lok, James B, Murayama, Haruhiko, Wastling, Jonathan, Streit, Adrian, Kikuchi, Taisei, Viney, Mark, Berriman, Matthew
Published in Nature genetics (01.03.2016)
Published in Nature genetics (01.03.2016)
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A genetic mechanism for female-limited Batesian mimicry in Papilio butterfly
Nishikawa, Hideki, Iijima, Takuro, Kajitani, Rei, Yamaguchi, Junichi, Ando, Toshiya, Suzuki, Yutaka, Sugano, Sumio, Fujiyama, Asao, Kosugi, Shunichi, Hirakawa, Hideki, Tabata, Satoshi, Ozaki, Katsuhisa, Morimoto, Hiroya, Ihara, Kunio, Obara, Madoka, Hori, Hiroshi, Itoh, Takehiko, Fujiwara, Haruhiko
Published in Nature genetics (01.04.2015)
Published in Nature genetics (01.04.2015)
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Cohesin mediates transcriptional insulation by CCCTC-binding factor
Shirahige, Katsuhiko, Peters, Jan-Michael, Wendt, Kerstin S, Yoshida, Keisuke, Itoh, Takehiko, Bando, Masashige, Koch, Birgit, Schirghuber, Erika, Tsutsumi, Shuichi, Nagae, Genta, Ishihara, Ko, Mishiro, Tsuyoshi, Yahata, Kazuhide, Imamoto, Fumio, Aburatani, Hiroyuki, Nakao, Mitsuyoshi, Imamoto, Naoko, Maeshima, Kazuhiro
Published in Nature (14.02.2008)
Published in Nature (14.02.2008)
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Curing cytoplasmic male sterility via TALEN-mediated mitochondrial genome editing
Kazama, Tomohiko, Okuno, Miki, Watari, Yuta, Yanase, Shungo, Koizuka, Chie, Tsuruta, Yu, Sugaya, Hajime, Toyoda, Atsushi, Itoh, Takehiko, Tsutsumi, Nobuhiro, Toriyama, Kinya, Koizuka, Nobuya, Arimura, Shin-ichi
Published in Nature plants (01.07.2019)
Published in Nature plants (01.07.2019)
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Repeated inversions within a pannier intron drive diversification of intraspecific colour patterns of ladybird beetles
Ando, Toshiya, Matsuda, Takeshi, Goto, Kumiko, Hara, Kimiko, Ito, Akinori, Hirata, Junya, Yatomi, Joichiro, Kajitani, Rei, Okuno, Miki, Yamaguchi, Katsushi, Kobayashi, Masaaki, Takano, Tomoyuki, Minakuchi, Yohei, Seki, Masahide, Suzuki, Yutaka, Yano, Kentaro, Itoh, Takehiko, Shigenobu, Shuji, Toyoda, Atsushi, Niimi, Teruyuki
Published in Nature communications (21.09.2018)
Published in Nature communications (21.09.2018)
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Genome sequence and analysis of the Japanese morning glory Ipomoea nil
Hoshino, Atsushi, Jayakumar, Vasanthan, Nitasaka, Eiji, Toyoda, Atsushi, Noguchi, Hideki, Itoh, Takehiko, Shin-I, Tadasu, Minakuchi, Yohei, Koda, Yuki, Nagano, Atsushi J., Yasugi, Masaki, Honjo, Mie N., Kudoh, Hiroshi, Seki, Motoaki, Kamiya, Asako, Shiraki, Toshiyuki, Carninci, Piero, Asamizu, Erika, Nishide, Hiroyo, Tanaka, Sachiko, Park, Kyeung-Il, Morita, Yasumasa, Yokoyama, Kohei, Uchiyama, Ikuo, Tanaka, Yoshikazu, Tabata, Satoshi, Shinozaki, Kazuo, Hayashizaki, Yoshihide, Kohara, Yuji, Suzuki, Yutaka, Sugano, Sumio, Fujiyama, Asao, Iida, Shigeru, Sakakibara, Yasubumi
Published in Nature communications (08.11.2016)
Published in Nature communications (08.11.2016)
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Parallel reductive genome evolution in Desulfovibrio ectosymbionts independently acquired by Trichonympha protists in the termite gut
Takeuchi, Mariko, Kuwahara, Hirokazu, Murakami, Takumi, Takahashi, Kazuki, Kajitani, Rei, Toyoda, Atsushi, Itoh, Takehiko, Ohkuma, Moriya, Hongoh, Yuichi
Published in The ISME Journal (01.09.2020)
Published in The ISME Journal (01.09.2020)
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