Landscape of the complete RNA chemical modifications in the human 80S ribosome
Taoka, Masato, Nobe, Yuko, Yamaki, Yuka, Sato, Ko, Ishikawa, Hideaki, Izumikawa, Keiichi, Yamauchi, Yoshio, Hirota, Kouji, Nakayama, Hiroshi, Takahashi, Nobuhiro, Isobe, Toshiaki
Published in Nucleic acids research (12.10.2018)
Published in Nucleic acids research (12.10.2018)
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Journal Article
Direct Identification of Human Cellular MicroRNAs by Nanoflow Liquid Chromatography–High-Resolution Tandem Mass Spectrometry and Database Searching
Nakayama, Hiroshi, Yamauchi, Yoshio, Taoka, Masato, Isobe, Toshiaki
Published in Analytical chemistry (Washington) (03.03.2015)
Published in Analytical chemistry (Washington) (03.03.2015)
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Journal Article
Dynamic RNA acetylation revealed by quantitative cross-evolutionary mapping
Sas-Chen, Aldema, Thomas, Justin M., Matzov, Donna, Taoka, Masato, Nance, Kellie D., Nir, Ronit, Bryson, Keri M., Shachar, Ran, Liman, Geraldy L. S., Burkhart, Brett W., Gamage, Supuni Thalalla, Nobe, Yuko, Briney, Chloe A., Levy, Michaella J., Fuchs, Ryan T., Robb, G. Brett, Hartmann, Jesse, Sharma, Sunny, Lin, Qishan, Florens, Laurence, Washburn, Michael P., Isobe, Toshiaki, Santangelo, Thomas J., Shalev-Benami, Moran, Meier, Jordan L., Schwartz, Schraga
Published in Nature (London) (23.07.2020)
Published in Nature (London) (23.07.2020)
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S1P-S1PR2 Axis Mediates Homing of Muse Cells into Damaged Heart for Long Lasting Tissue Repair and Functional Recovery After Acute Myocardial Infarction
Yamada, Yoshihisa, Wakao, Shohei, Kushida, Yoshihiro, Minatoguchi, Shingo, Mikami, Atsushi, Higashi, Kenshi, Baba, Shinya, Shigemoto, Taeko, Kuroda, Yasumasa, Kanamori, Hiromitsu, Amin, Mohamad, Kawasaki, Masanori, Nishigaki, Kazuhiko, Taoka, Masato, Isobe, Toshiaki, Muramatsu, Chisako, Dezawa, Mari, Minatoguchi, Shinya
Published in Circulation research (13.04.2018)
Published in Circulation research (13.04.2018)
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Journal Article
Structural Analyses of Toll-like Receptor 7 Reveal Detailed RNA Sequence Specificity and Recognition Mechanism of Agonistic Ligands
Zhang, Zhikuan, Ohto, Umeharu, Shibata, Takuma, Taoka, Masato, Yamauchi, Yoshio, Sato, Ryota, Shukla, Nikunj M., David, Sunil A., Isobe, Toshiaki, Miyake, Kensuke, Shimizu, Toshiyuki
Published in Cell reports (Cambridge) (18.12.2018)
Published in Cell reports (Cambridge) (18.12.2018)
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Journal Article
Atomic resolution snapshot of Leishmania ribosome inhibition by the aminoglycoside paromomycin
Shalev-Benami, Moran, Zhang, Yan, Rozenberg, Haim, Nobe, Yuko, Taoka, Masato, Matzov, Donna, Zimmerman, Ella, Bashan, Anat, Isobe, Toshiaki, Jaffe, Charles L., Yonath, Ada, Skiniotis, Georgios
Published in Nature communications (17.11.2017)
Published in Nature communications (17.11.2017)
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Journal Article
Method for Direct Mass-Spectrometry-Based Identification of Monomethylated RNA Nucleoside Positional Isomers and Its Application to the Analysis of Leishmania rRNA
Nakayama, Hiroshi, Yamauchi, Yoshio, Nobe, Yuko, Sato, Ko, Takahashi, Nobuhiro, Shalev-Benami, Moran, Isobe, Toshiaki, Taoka, Masato
Published in Analytical chemistry (Washington) (17.12.2019)
Published in Analytical chemistry (Washington) (17.12.2019)
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Journal Article
Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
Matzov, Donna, Taoka, Masato, Nobe, Yuko, Yamauchi, Yoshio, Halfon, Yehuda, Asis, Nofar, Zimermann, Ella, Rozenberg, Haim, Bashan, Anat, Bhushan, Shashi, Isobe, Toshiaki, Gray, Michael W, Yonath, Ada, Shalev-Benami, Moran
Published in Nucleic acids research (18.11.2020)
Published in Nucleic acids research (18.11.2020)
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Journal Article
A single pseudouridine on rRNA regulates ribosome structure and function in the mammalian parasite Trypanosoma brucei
Rajan, K. Shanmugha, Madmoni, Hava, Bashan, Anat, Taoka, Masato, Aryal, Saurav, Nobe, Yuko, Doniger, Tirza, Galili Kostin, Beathrice, Blumberg, Amit, Cohen-Chalamish, Smadar, Schwartz, Schraga, Rivalta, Andre, Zimmerman, Ella, Unger, Ron, Isobe, Toshiaki, Yonath, Ada, Michaeli, Shulamit
Published in Nature communications (20.11.2023)
Published in Nature communications (20.11.2023)
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Damage sensing mediated by serine proteases Hayan and Persephone for Toll pathway activation in apoptosis-deficient flies
Nakano, Shotaro, Kashio, Soshiro, Nishimura, Kei, Takeishi, Asuka, Kosakamoto, Hina, Obata, Fumiaki, Kuranaga, Erina, Chihara, Takahiro, Yamauchi, Yoshio, Isobe, Toshiaki, Miura, Masayuki
Published in PLoS genetics (15.06.2023)
Published in PLoS genetics (15.06.2023)
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Journal Article
TDP-43 regulates site-specific 2′-O-methylation of U1 and U2 snRNAs via controlling the Cajal body localization of a subset of C/D scaRNAs
Izumikawa, Keiichi, Nobe, Yuko, Ishikawa, Hideaki, Yamauchi, Yoshio, Taoka, Masato, Sato, Ko, Nakayama, Hiroshi, Simpson, Richard J, Isobe, Toshiaki, Takahashi, Nobuhiro
Published in Nucleic acids research (18.03.2019)
Published in Nucleic acids research (18.03.2019)
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Journal Article
Low-fluence blue light-induced phosphorylation of Zmphot1 mediates the first positive phototropism
Suzuki, Hiromi, Koshiba, Tomokazu, Fujita, Chiharu, Yamauchi, Yoshio, Kimura, Taro, Isobe, Toshiaki, Sakai, Tatsuya, Taoka, Masato, Okamoto, Takashi
Published in Journal of experimental botany (24.10.2019)
Published in Journal of experimental botany (24.10.2019)
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Identification of the neuroblastoma-amplified gene product as a component of the syntaxin 18 complex implicated in Golgi-to-endoplasmic reticulum retrograde transport
Aoki, Takehiro, Ichimura, Sarah, Itoh, Ayano, Kuramoto, Mami, Shinkawa, Takashi, Isobe, Toshiaki, Tagaya, Mitsuo
Published in Molecular biology of the cell (01.06.2009)
Published in Molecular biology of the cell (01.06.2009)
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Journal Article
A mass spectrometry-based method for direct determination of pseudouridine in RNA
Yamauchi, Yoshio, Nobe, Yuko, Izumikawa, Keiichi, Higo, Daisuke, Yamagishi, Yoko, Takahashi, Nobuhiro, Nakayama, Hiroshi, Isobe, Toshiaki, Taoka, Masato
Published in Nucleic acids research (07.04.2016)
Published in Nucleic acids research (07.04.2016)
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Journal Article
TDP-43 stabilises the processing intermediates of mitochondrial transcripts
Izumikawa, Keiichi, Nobe, Yuko, Yoshikawa, Harunori, Ishikawa, Hideaki, Miura, Yutaka, Nakayama, Hiroshi, Nonaka, Takashi, Hasegawa, Masato, Egawa, Naohiro, Inoue, Haruhisa, Nishikawa, Kouki, Yamano, Koji, Simpson, Richard J., Taoka, Masato, Yamauchi, Yoshio, Isobe, Toshiaki, Takahashi, Nobuhiro
Published in Scientific reports (09.08.2017)
Published in Scientific reports (09.08.2017)
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Journal Article
Denaturing reversed phase liquid chromatographic separation of non-coding ribonucleic acids on macro-porous polystyrene-divinylbenzene resins
Yamauchi, Yoshio, Taoka, Masato, Nobe, Yuko, Izumikawa, Keiichi, Takahashi, Nobuhiro, Nakayama, Hiroshi, Isobe, Toshiaki
Published in Journal of Chromatography A (18.10.2013)
Published in Journal of Chromatography A (18.10.2013)
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Journal Article
Poly(A)-specific ribonuclease regulates the processing of small-subunit rRNAs in human cells
Ishikawa, Hideaki, Yoshikawa, Harunori, Izumikawa, Keiichi, Miura, Yutaka, Taoka, Masato, Nobe, Yuko, Yamauchi, Yoshio, Nakayama, Hiroshi, Simpson, Richard J, Isobe, Toshiaki, Takahashi, Nobuhiro
Published in Nucleic acids research (07.04.2017)
Published in Nucleic acids research (07.04.2017)
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Journal Article
Structural and mechanistic insights into the function of Leishmania ribosome lacking a single pseudouridine modification
Rajan, K. Shanmugha, Aryal, Saurav, Hiregange, Disha-Gajanan, Bashan, Anat, Madmoni, Hava, Olami, Mika, Doniger, Tirza, Cohen-Chalamish, Smadar, Pescher, Pascal, Taoka, Masato, Nobe, Yuko, Fedorenko, Aliza, Bose, Tanaya, Zimermann, Ella, Prina, Eric, Aharon-Hefetz, Noa, Pilpel, Yitzhak, Isobe, Toshiaki, Unger, Ron, Späth, Gerald F., Yonath, Ada, Michaeli, Shulamit
Published in Cell reports (Cambridge) (28.05.2024)
Published in Cell reports (Cambridge) (28.05.2024)
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