Rapid feedback on hospital onset SARS-CoV-2 infections combining epidemiological and sequencing data
Stirrup, Oliver, Hughes, Joseph, Parker, Matthew, Partridge, David G, Shepherd, James G, Blackstone, James, Coll, Francesc, Keeley, Alexander, Lindsey, Benjamin B, Marek, Aleksandra, Peters, Christine, Singer, Joshua B, Tamuri, Asif, de Silva, Thushan I, Thomson, Emma C, Breuer, Judith
Published in eLife (29.06.2021)
Published in eLife (29.06.2021)
Get full text
Journal Article
Genomic Characterization of Skin and Soft Tissue Streptococcus pyogenes Isolates from a Low-Income and a High-Income Setting
Bah, Saikou Y, Keeley, Alexander J, Armitage, Edwin P, Khalid, Henna, Chaudhuri, Roy R, Senghore, Elina, Manneh, Jarra, Tilley, Lisa, Marks, Michael, Darboe, Saffiatou, Sesay, Abdul K, de Silva, Thushan I, Turner, Claire E
Published in mSphere (21.02.2023)
Published in mSphere (21.02.2023)
Get full text
Journal Article
Outcome of COVID-19 in hospitalised immunocompromised patients: An analysis of the WHO ISARIC CCP-UK prospective cohort study
Turtle, Lance, Thorpe, Mathew, Drake, Thomas M, Swets, Maaike, Palmieri, Carlo, Russell, Clark D, Ho, Antonia, Aston, Stephen, Wootton, Daniel G, Richter, Alex, de Silva, Thushan I, Hardwick, Hayley E, Leeming, Gary, Law, Andy, Openshaw, Peter J M, Harrison, Ewen M, Baillie, J Kenneth, Semple, Malcolm G, Docherty, Annemarie B
Published in PLoS medicine (31.01.2023)
Published in PLoS medicine (31.01.2023)
Get full text
Journal Article
Immune Reconstitution Following Autologous Hematopoietic Stem Cell Transplantation for Multiple Sclerosis: A Review on Behalf of the EBMT Autoimmune Diseases Working Party
Cencioni, Maria Teresa, Genchi, Angela, Brittain, Gavin, de Silva, Thushan I, Sharrack, Basil, Snowden, John Andrew, Alexander, Tobias, Greco, Raffaella, Muraro, Paolo A
Published in Frontiers in immunology (01.02.2022)
Published in Frontiers in immunology (01.02.2022)
Get full text
Journal Article
High SARS-CoV-2 incidence and asymptomatic fraction during Delta and Omicron BA.1 waves in The Gambia
Jarju, Sheikh, Wenlock, Rhys D., Danso, Madikoi, Jobe, Dawda, Jagne, Ya Jankey, Darboe, Alansana, Kumado, Michelle, Jallow, Yusupha, Touray, Mamlie, Ceesay, Ebrima A., Gaye, Hoja, Gaye, Biran, Tunkara, Abdoulie, Kandeh, Sheriff, Gomes, Marie, Sylva, Ellen Lena, Toure, Fatoumata, Hornsby, Hailey, Lindsey, Benjamin B., Nicklin, Martin J., Sayers, Jon R., Sesay, Abdul K., Kucharski, Adam, Hodgson, David, Kampmann, Beate, de Silva, Thushan I.
Published in Nature communications (07.05.2024)
Published in Nature communications (07.05.2024)
Get full text
Journal Article
Prevalence of Panton-Valentine Leukocidin (PVL) and Antimicrobial Resistance in Community-Acquired Clinical Staphylococcus aureus in an Urban Gambian Hospital: A 11-Year Period Retrospective Pilot Study
Darboe, Saffiatou, Dobreniecki, Sarah, Jarju, Sheikh, Jallow, Mamadou, Mohammed, Nuredin Ibrahim, Wathuo, Miriam, Ceesay, Buntung, Tweed, Sam, Basu Roy, Robindra, Okomo, Uduak, Kwambana-Adams, Brenda, Antonio, Martin, Bradbury, Richard S, de Silva, Thushan I, Forrest, Karen, Roca, Anna, Lawal, Bolarinde Joseph, Nwakanma, Davis, Secka, Ousman
Published in Frontiers in cellular and infection microbiology (2019)
Published in Frontiers in cellular and infection microbiology (2019)
Get full text
Journal Article
High burden and seasonal variation of paediatric scabies and pyoderma prevalence in The Gambia: A cross-sectional study
Armitage, Edwin P, Senghore, Elina, Darboe, Saffiatou, Barry, Momodou, Camara, Janko, Bah, Sulayman, Marks, Michael, Cerami, Carla, Roca, Anna, Antonio, Martin, Turner, Claire E, de Silva, Thushan I
Published in PLoS neglected tropical diseases (01.10.2019)
Published in PLoS neglected tropical diseases (01.10.2019)
Get full text
Journal Article
mRNA vaccination drives differential mucosal neutralizing antibody profiles in naïve and SARS-CoV-2 previously-infected individuals
Longet, Stephanie, Hargreaves, Alexander, Healy, Saoirse, Brown, Rebecca, Hornsby, Hailey R, Meardon, Naomi, Tipton, Tom, Barnes, Eleanor, Dunachie, Susanna, Duncan, Christopher J A, Klenerman, Paul, Richter, Alex, Turtle, Lance, de Silva, Thushan I, Carroll, Miles W
Published in Frontiers in immunology (08.09.2022)
Published in Frontiers in immunology (08.09.2022)
Get full text
Journal Article
Early virological and immunological events in asymptomatic Epstein-Barr virus infection in African children
Jayasooriya, Shamanthi, de Silva, Thushan I, Njie-jobe, Jainaba, Sanyang, Chilel, Leese, Alison M, Bell, Andrew I, McAulay, Karen A, Yanchun, Peng, Long, Heather M, Dong, Tao, Whittle, Hilton C, Rickinson, Alan B, Rowland-Jones, Sarah L, Hislop, Andrew D, Flanagan, Katie L
Published in PLoS pathogens (01.03.2015)
Published in PLoS pathogens (01.03.2015)
Get full text
Journal Article
Low-Bias RNA Sequencing of the HIV-2 Genome from Blood Plasma
James, Katherine L, de Silva, Thushan I, Brown, Katherine, Whittle, Hilton, Taylor, Stephen, McVean, Gilean, Esbjörnsson, Joakim, Rowland-Jones, Sarah L
Published in Journal of virology (01.01.2019)
Published in Journal of virology (01.01.2019)
Get full text
Journal Article
CD4+ and CD8+ T cells and antibodies are associated with protection against Delta vaccine breakthrough infection: a nested case-control study within the PITCH study
Neale, Isabel, Ali, Mohammad, Kronsteiner, Barbara, Longet, Stephanie, Abraham, Priyanka, Deeks, Alexandra S, Brown, Anthony, Moore, Shona C, Stafford, Lizzie, Dobson, Susan L, Plowright, Megan, Newman, Thomas A H, Wu, Mary Y, Carr, Edward J, Beale, Rupert, Otter, Ashley D, Hopkins, Susan, Hall, Victoria, Tomic, Adriana, Payne, Rebecca P, Barnes, Eleanor, Richter, Alex, Duncan, Christopher J A, Turtle, Lance, de Silva, Thushan I, Carroll, Miles, Lambe, Teresa, Klenerman, Paul, Dunachie, Susanna
Published in mBio (31.10.2023)
Published in mBio (31.10.2023)
Get full text
Journal Article
Comparison of mucosal lining fluid sampling methods and influenza-specific IgA detection assays for use in human studies of influenza immunity
de Silva, Thushan I., Gould, Victoria, Mohammed, Nuredin I., Cope, Alethea, Meijer, Adam, Zutt, Ilse, Reimerink, Johan, Kampmann, Beate, Hoschler, Katja, Zambon, Maria, Tregoning, John S.
Published in Journal of immunological methods (01.10.2017)
Published in Journal of immunological methods (01.10.2017)
Get full text
Journal Article
Genomic and Epidemiological Analysis of SARS-CoV-2 Viruses in Sri Lanka
Jeewandara, Chandima, Jayathilaka, Deshni, Ranasinghe, Diyanath, Hsu, Nienyun Sharon, Ariyaratne, Dinuka, Jayadas, Tibutius Thanesh, Panambara Arachchige, Deshan Madhusanka, Lindsey, Benjamin B, Gomes, Laksiri, Parker, Matthew D, Wijewickrama, Ananda, Karunaratne, Malika, Ogg, Graham S, de Silva, Thushan I, Malavige, Gathsaurie Neelika
Published in Frontiers in microbiology (16.09.2021)
Published in Frontiers in microbiology (16.09.2021)
Get full text
Journal Article
Impact of intra-partum azithromycin on carriage of group A streptococcus in the Gambia: a posthoc analysis of a double-blind randomized placebo-controlled trial
Jagne, Isatou, Keeley, Alexander J, Bojang, Abdoulie, Camara, Bully, Jallow, Edrissa, Senghore, Elina, Oluwalana, Claire, Bah, Saikou Y, Turner, Claire E, Sesay, Abdul Karim, D'Alessandro, Umberto, Bottomley, Christian, de Silva, Thushan I, Roca, Anna
Published in BMC infectious diseases (29.01.2022)
Published in BMC infectious diseases (29.01.2022)
Get full text
Journal Article
COVID-19 vaccines are effective at preventing symptomatic and severe infection among healthcare workers: A clinical review
Galgut, Oliver, Ashford, Fiona, Deeks, Alexandra, Ghataure, Andeep, Islam, Mimia, Sambhi, Tanvir, Ker, Yiu Wayn, Duncan, Christopher J.A., de Silva, Thushan I., Hopkins, Susan, Hall, Victoria, Klenerman, Paul, Dunachie, Susanna, Richter, Alex
Published in Vaccine: X (01.10.2024)
Published in Vaccine: X (01.10.2024)
Get full text
Journal Article
Effect of intrapartum azithromycin on gut microbiota development in early childhood: A post hoc analysis of a double-blind randomized trial
Sanyang, Bakary, de Silva, Thushan I., Camara, Bully, Beloum, Nathalie, Kanteh, Abdoulie, Manneh, Jarra, de Steenhuijsen Piters, Wouter A.A., Bogaert, Debby, Sesay, Abdul Karim, Roca, Anna
Published in iScience (20.09.2024)
Published in iScience (20.09.2024)
Get full text
Journal Article
Health-seeking behaviour and beliefs around sore throat in The Gambia: A qualitative study
Suau Sans, Maria, Manneh, Muhammed, Ceesay, Isatou, Bittaye, Amat, de Crombrugghe, Gabrielle, Keeley, Alexander J, de Silva, Thushan I, Palmer, Jennifer, Armitage, Edwin P, Marks, Michael
Published in PLOS global public health (2024)
Published in PLOS global public health (2024)
Get full text
Journal Article
Development and Characterisation of a Four-Plex Assay to Measure Streptococcus pyogenes Antigen-Specific IgG in Human Sera
Keeley, Alexander J, Carducci, Martina, Massai, Luisa, Pizza, Mariagrazia, de Silva, Thushan I, G Moriel, Danilo, Rossi, Omar
Published in Methods and protocols (27.06.2022)
Published in Methods and protocols (27.06.2022)
Get full text
Journal Article
Effect of intra-partum azithromycin on the development of the infant nasopharyngeal microbiota: A post hoc analysis of a double-blind randomized trial
Sanyang, Bakary, de Silva, Thushan I., Kanteh, Abdoulie, Bojang, Abdoulie, Manneh, Jarra, Piters, Wouter A.A. de Steenhuijsen, Peno, Chikondi, Bogaert, Debby, Sesay, Abdul Karim, Roca, Anna
Published in EBioMedicine (01.09.2022)
Published in EBioMedicine (01.09.2022)
Get full text
Journal Article