SNPs for a universal individual identification panel
Pakstis, Andrew J, Speed, William C, Fang, Rixun, Hyland, Fiona C. L, Furtado, Manohar R, Kidd, Judith R, Kidd, Kenneth K
Published in Human genetics (01.03.2010)
Published in Human genetics (01.03.2010)
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Journal Article
A second-generation combined linkage physical map of the human genome
Matise, Tara C, Chen, Fang, Chen, Wenwei, De La Vega, Francisco M, Hansen, Mark, He, Chunsheng, Hyland, Fiona C L, Kennedy, Giulia C, Kong, Xiangyang, Murray, Sarah S, Ziegle, Janet S, Stewart, William C L, Buyske, Steven
Published in Genome Research (01.12.2007)
Published in Genome Research (01.12.2007)
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RNA-Seq mapping and detection of gene fusions with a suffix array algorithm
Sakarya, Onur, Breu, Heinz, Radovich, Milan, Chen, Yongzhi, Wang, Yulei N, Barbacioru, Catalin, Utiramerur, Sowmi, Whitley, Penn P, Brockman, Joel P, Vatta, Paolo, Zhang, Zheng, Popescu, Liviu, Muller, Matthew W, Kudlingar, Vidya, Garg, Nriti, Li, Chieh-Yuan, Kong, Benjamin S, Bodeau, John P, Nutter, Robert C, Gu, Jian, Bramlett, Kelli S, Ichikawa, Jeffrey K, Hyland, Fiona C, Siddiqui, Asim S
Published in PLoS computational biology (01.04.2012)
Published in PLoS computational biology (01.04.2012)
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Journal Article
Good laboratory practice for clinical next-generation sequencing informatics pipelines
Gargis, Amy S, Kalman, Lisa, Bick, David P, da Silva, Cristina, Dimmock, David P, Funke, Birgit H, Gowrisankar, Sivakumar, Hegde, Madhuri R, Kulkarni, Shashikant, Mason, Christopher E, Nagarajan, Rakesh, Voelkerding, Karl V, Worthey, Elizabeth A, Aziz, Nazneen, Barnes, John, Bennett, Sarah F, Bisht, Himani, Church, Deanna M, Dimitrova, Zoya, Gargis, Shaw R, Hafez, Nabil, Hambuch, Tina, Hyland, Fiona C L, Luna, Ruth Ann, MacCannell, Duncan, Mann, Tobias, McCluskey, Megan R, McDaniel, Timothy K, Ganova-Raeva, Lilia M, Rehm, Heidi L, Reid, Jeffrey, Campo, David S, Resnick, Richard B, Ridge, Perry G, Salit, Marc L, Skums, Pavel, Wong, Lee-Jun C, Zehnbauer, Barbara A, Zook, Justin M, Lubin, Ira M
Published in Nature biotechnology (01.07.2015)
Published in Nature biotechnology (01.07.2015)
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Journal Article
Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding
McKernan, Kevin Judd, Peckham, Heather E, Costa, Gina L, McLaughlin, Stephen F, Fu, Yutao, Tsung, Eric F, Clouser, Christopher R, Duncan, Cisyla, Ichikawa, Jeffrey K, Lee, Clarence C, Zhang, Zheng, Ranade, Swati S, Dimalanta, Eileen T, Hyland, Fiona C, Sokolsky, Tanya D, Zhang, Lei, Sheridan, Andrew, Fu, Haoning, Hendrickson, Cynthia L, Li, Bin, Kotler, Lev, Stuart, Jeremy R, Malek, Joel A, Manning, Jonathan M, Antipova, Alena A, Perez, Damon S, Moore, Michael P, Hayashibara, Kathleen C, Lyons, Michael R, Beaudoin, Robert E, Coleman, Brittany E, Laptewicz, Michael W, Sannicandro, Adam E, Rhodes, Michael D, Gottimukkala, Rajesh K, Yang, Shan, Bafna, Vineet, Bashir, Ali, MacBride, Andrew, Alkan, Can, Kidd, Jeffrey M, Eichler, Evan E, Reese, Martin G, De La Vega, Francisco M, Blanchard, Alan P
Published in Genome Research (01.09.2009)
Published in Genome Research (01.09.2009)
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Journal Article
Analytical Validation of a Next-Generation Sequencing Assay to Monitor Immune Responses in Solid Tumors
Conroy, Jeffrey M., Pabla, Sarabjot, Glenn, Sean T., Burgher, Blake, Nesline, Mary, Papanicolau-Sengos, Antonios, Andreas, Jonathan, Giamo, Vincent, Lenzo, Felicia L., Hyland, Fiona C.L., Omilian, Angela, Bshara, Wiam, Qin, Moachun, He, Ji, Puzanov, Igor, Ernstoff, Marc S., Gardner, Mark, Galluzzi, Lorenzo, Morrison, Carl
Published in The Journal of molecular diagnostics : JMD (01.01.2018)
Published in The Journal of molecular diagnostics : JMD (01.01.2018)
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Journal Article
Patterns of Linkage Disequilibrium between SNPs in a Sardinian Population Isolate and the Selection of Markers for Association Studies
Angius, Andrea, Hyland, Fiona C. L., Persico, Ivana, Pirastu, Nicola, Woodage, Trevor, Pirastu, Mario, De La Vega, Francisco M.
Published in Human heredity (01.01.2008)
Published in Human heredity (01.01.2008)
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Journal Article
Characterizing the heterogeneity of triple-negative breast cancers using microdissected normal ductal epithelium and RNA-sequencing
Radovich, Milan, Clare, Susan E., Atale, Rutuja, Pardo, Ivanesa, Hancock, Bradley A., Solzak, Jeffrey P., Kassem, Nawal, Mathieson, Theresa, Storniolo, Anna Maria V., Rufenbarger, Connie, Lillemoe, Heather A., Blosser, Rachel J., Choi, Mi Ran, Sauder, Candice A., Doxey, Diane, Henry, Jill E., Hilligoss, Eric E., Sakarya, Onur, Hyland, Fiona C., Hickenbotham, Matthew, Zhu, Jin, Glasscock, Jarret, Badve, Sunil, Ivan, Mircea, Liu, Yunlong, Sledge, George W., Schneider, Bryan P.
Published in Breast cancer research and treatment (01.01.2014)
Published in Breast cancer research and treatment (01.01.2014)
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Journal Article
Abstract 1207: Custom next-generation sequencing primer designs for targeted sequencing of multi strain viral targets
Singh, Ratnesh, Li, Na, Luo, Zunping, McGeachy, Anna, Alcantara, Antonio F. Martinez, Ewing, Aren, Hyland, Fiona C.
Published in Cancer research (Chicago, Ill.) (15.08.2020)
Published in Cancer research (Chicago, Ill.) (15.08.2020)
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Abstract 2505: The Oncomine BRCA expanded next-generation sequencing assay: Development and analytical validation of a new panel for detection of SNV, insertions, deletions and copy number variants in a panel of 15 genes involved in homologous recombination repair of double-strand break DNA damage
Scafe, Charles, Zhu, Yun, Yang, Chenchen, Tseng, Yu-Ting, McKnight, Brooke, Farfan, Fernando, Bandla, Santoshi, Sadis, Seth, Roman, Steven, Hyland, Fiona C.
Published in Cancer research (Chicago, Ill.) (15.08.2020)
Published in Cancer research (Chicago, Ill.) (15.08.2020)
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Abstract 3118: Next generation sequencing assay for detection of gene fusions and exon deletion events in tissue and liquid biopsy samples at very low frequency
Gottimukkala, Rajesh K., Hyland, Fiona C., Marcovitz, Amir, Schageman, Jeoffrey, Bagai, Varun, Cao, Ru, Williams, Paul D., Myrand, Scott P., Gu, Jian, Sadis, Seth, Bramlett, Kelli S.
Published in Cancer research (Chicago, Ill.) (15.08.2020)
Published in Cancer research (Chicago, Ill.) (15.08.2020)
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Journal Article
Abstract 177: RNA sequencing based gene fusion detection with oncomine comprehensive assay plus
Marcovitz, Amir, Gottimukkala, Rajesh K., Bee, Gary G., Kilzer, Jennifer M., Mital, Vinay K., Wong-Ho, Elain, Yang, Chenchen, Tseng, Yu-Ting, Myrand, Scott P., Williams, Paul D., Sadis, Seth, Hyland, Fiona C.
Published in Cancer research (Chicago, Ill.) (15.08.2020)
Published in Cancer research (Chicago, Ill.) (15.08.2020)
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Journal Article
Abstract 1515: Shannon entropy of mutational signatures predict sensitivity of signature detection in targeted sequencing
Chellappan, Ajithavalli, Vora, Chintan, Patro, Jagannath, Nair, Shilpa, Kanap, Rushikesh S., Hyland, Fiona C.
Published in Cancer research (Chicago, Ill.) (15.06.2022)
Published in Cancer research (Chicago, Ill.) (15.06.2022)
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Journal Article
Abstract 78: Detection of gene fusions and exon skipping events in lung FFPE samples with Oncomine Precision Assay on Ion Torrent Genexus࣪ System
Marcovitz, Amir, Schageman, Jeoffrey, Gu, Jian, Wunsch, Stephen, Chi, David, williams, Paul D., Myrand, Scott P., Hyland, Fiona C., Sadis, Seth, Bramlett, Kelli S.
Published in Cancer research (Chicago, Ill.) (15.06.2022)
Published in Cancer research (Chicago, Ill.) (15.06.2022)
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Journal Article
Normalization of Data Using Controls
KAO H. PIN, OSTADAN OMEAD, STEVENS JUNKO F, KARGER ACHIM, PRATT MARK R, YOUNG GREG, HARDING IAN A, OLDHAM MARK F, TOMANEY AUSTIN B, HAYASHIBARA KATHLEEN C, LAIRD HYLAND FIONA C
Year of Publication 06.05.2010
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Year of Publication 06.05.2010
Patent
NORMALIZATION OF DATA USING CONTROLS
PRATT, MARK R, TOMANEY, AUSTIN B, OLDHAM, MARK F, YOUNG, GREG, LAIRD HYLAND, FIONA C, KAO, H. PIN, HARDING, IAN A, STEVENS, JUNCO F, OSTADAN, OMEAD, KARGER, ACHIM, HAYASHIBARA, KATHLEEN C
Year of Publication 19.07.2007
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Year of Publication 19.07.2007
Patent