Curated variation benchmarks for challenging medically relevant autosomal genes
Wagner, Justin, Olson, Nathan D, Harris, Lindsay, McDaniel, Jennifer, Cheng, Haoyu, Fungtammasan, Arkarachai, Hwang, Yih-Chii, Gupta, Richa, Wenger, Aaron M, Rowell, William J, Khan, Ziad M, Farek, Jesse, Zhu, Yiming, Pisupati, Aishwarya, Mahmoud, Medhat, Xiao, Chunlin, Yoo, Byunggil, Sahraeian, Sayed Mohammad Ebrahim, Miller, Danny E, Jáspez, David, Lorenzo-Salazar, José M, Muñoz-Barrera, Adrián, Rubio-Rodríguez, Luis A, Flores, Carlos, Narzisi, Giuseppe, Evani, Uday Shanker, Clarke, Wayne E, Lee, Joyce, Mason, Christopher E, Lincoln, Stephen E, Miga, Karen H, Ebbert, Mark T W, Shumate, Alaina, Li, Heng, Chin, Chen-Shan, Zook, Justin M, Sedlazeck, Fritz J
Published in Nature biotechnology (01.05.2022)
Published in Nature biotechnology (01.05.2022)
Get full text
Journal Article
HIPPIE: a high-throughput identification pipeline for promoter interacting enhancer elements
Hwang, Yih-Chii, Lin, Chiao-Feng, Valladares, Otto, Malamon, John, Kuksa, Pavel P, Zheng, Qi, Gregory, Brian D, Wang, Li-San
Published in Bioinformatics (15.04.2015)
Published in Bioinformatics (15.04.2015)
Get full text
Journal Article
McEnhancer: predicting gene expression via semi-supervised assignment of enhancers to target genes
Hafez, Dina, Karabacak, Aslihan, Krueger, Sabrina, Hwang, Yih-Chii, Wang, Li-San, Zinzen, Robert P, Ohler, Uwe
Published in Genome Biology (26.10.2017)
Published in Genome Biology (26.10.2017)
Get full text
Journal Article
A functional genomics screen for microRNA regulators of NF-kappaB signaling
Olarerin-George, Anthony O, Anton, Lauren, Hwang, Yih-Chii, Elovitz, Michal A, Hogenesch, John B
Published in BMC biology (28.02.2013)
Published in BMC biology (28.02.2013)
Get full text
Journal Article
High-throughput identification of long-range regulatory elements and their target promoters in the human genome
Hwang, Yih-Chii, Zheng, Qi, Gregory, Brian D, Wang, Li-San
Published in Nucleic acids research (01.05.2013)
Published in Nucleic acids research (01.05.2013)
Get full text
Journal Article
Predicting essential genes based on network and sequence analysis
Hwang, Yih-Chii, Lin, Chen-Ching, Chang, Jen-Yun, Mori, Hirotada, Juan, Hsueh-Fen, Huang, Hsuan-Cheng
Published in Molecular bioSystems (01.01.2009)
Published in Molecular bioSystems (01.01.2009)
Get full text
Journal Article
Essential Core of Protein−Protein Interaction Network in Escherichia coli
Lin, Chen-Ching, Juan, Hsueh-Fen, Hsiang, Jen-Tsung, Hwang, Yih-Chii, Mori, Hirotada, Huang, Hsuan-Cheng
Published in Journal of proteome research (03.04.2009)
Published in Journal of proteome research (03.04.2009)
Get full text
Journal Article
DRAW+SneakPeek: analysis workflow and quality metric management for DNA-seq experiments
Lin, Chiao-Feng, Valladares, Otto, Childress, D Micah, Klevak, Egor, Geller, Evan T, Hwang, Yih-Chii, Tsai, Ellen A, Schellenberg, Gerard D, Wang, Li-San
Published in Bioinformatics (01.10.2013)
Published in Bioinformatics (01.10.2013)
Get full text
Journal Article
Prediction of late-onset Alzheimer’s disease-associated enhancer elements
Tang, Mitchell, Kramer, Christian, Xu, George, Hawk, Michele, Hwang, Yih-Chii, Lin, Chiao-Feng, Kuksa, Pavel, Wang, Weixin, Dombroski, Beth A, Naj, Adam C, Wang, Li-San, Schellenberg, Gerald D
Published in Alzheimer's & dementia (01.07.2015)
Published in Alzheimer's & dementia (01.07.2015)
Get full text
Journal Article
P1‐001: Prediction of late‐onset Alzheimer's disease‐associated enhancer elements
Tang, Mitchell, Kramer, Christian, Xu, George, Hawk, Michele, Hwang, Yih-Chii, Lin, Chiao-Feng, Kuksa, Pavel, Wang, Weixin, Dombroski, Beth A., Naj, Adam C., Wang, Li-San, Schellenberg, Gerald D.
Published in Alzheimer's & dementia (01.07.2015)
Published in Alzheimer's & dementia (01.07.2015)
Get full text
Journal Article
Towards a Comprehensive Variation Benchmark for Challenging Medically-Relevant Autosomal Genes
Wagner, Justin, Olson, Nathan D, Harris, Lindsay, Mcdaniel, Jennifer, Cheng, Haoyu, Fungtammasan, Arkarachai, Hwang, Yih-Chii, Gupta, Richa, Wenger, Aaron M, Rowell, William J, Khan, Ziad M, Farek, Jesse, Zhu, Yiming, Pisupati, Aishwarya, Mahmoud, Medhat, Xiao, Chunlin, Yoo, Byunggil, Sayed Mohammad Ebrahim Sahraeian, Miller, Danny E, Jaspez, David, Lorenzo-Salazar, Jose M, Munoz-Barrera, Adrian, Rubio-Rodriguez, Luis A, Flores, Carlos, Narzisi, Giuseppe, Uday Shanker Evani, Clarke, Wayne E, Lee, Joyce, Mason, Christopher E, Lincoln, Stephen E, Miga, Karen H, Ebbert, Mark Tw, Shumate, Alaina, Li, Heng, Chen-Shan, Chin, Zook, Justin M, Sedlazeck, Fritz J
Published in bioRxiv (01.10.2021)
Published in bioRxiv (01.10.2021)
Get full text
Paper