TMExplorer: A tumour microenvironment single-cell RNAseq database and search tool
Christensen, Erik, Naidas, Alaine, Chen, David, Husic, Mia, Shooshtari, Parisa
Published in PloS one (09.09.2022)
Published in PloS one (09.09.2022)
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Journal Article
Skeletal muscle metabolism and contraction performance regulation by teneurin C-terminal-associated peptide-1
Hogg, David W, Reid, Andrea L, Dodsworth, Thomas L, Chen, Yani, Reid, Ross M, Xu, Mei, Husic, Mia, Biga, Peggy R, Slee, Andrew, Buck, Leslie T, Barsyte-Lovejoy, Dalia, Locke, Marius, Lovejoy, David A
Published in Frontiers in physiology (29.11.2022)
Published in Frontiers in physiology (29.11.2022)
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Journal Article
CanDIG: Federated network across Canada for multi-omic and health data discovery and analysis
Dursi, L. Jonathan, Bozoky, Zoltan, de Borja, Richard, Li, Haoyuan, Bujold, David, Lipski, Adam, Rashid, Shaikh Farhan, Sethi, Amanjeev, Memon, Neelam, Naidoo, Dashaylan, Coral-Sasso, Felipe, Wong, Matthew, Quirion, P-O, Lu, Zhibin, Agarwal, Samarth, Pavlov, Yuriy, Ponomarev, Andrew, Husic, Mia, Pace, Krista, Palmer, Samantha, Grover, Stephanie A., Hakgor, Sevan, Siu, Lillian L., Malkin, David, Virtanen, Carl, Pugh, Trevor J., Jacques, Pierre-Étienne, Joly, Yann, Jones, Steven J.M., Bourque, Guillaume, Brudno, Michael
Published in Cell genomics (10.11.2021)
Published in Cell genomics (10.11.2021)
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Journal Article
MetaFusion: a high-confidence metacaller for filtering and prioritizing RNA-seq gene fusion candidates
Apostolides, Michael, Jiang, Yue, Husić, Mia, Siddaway, Robert, Hawkins, Cynthia, Turinsky, Andrei L, Brudno, Michael, Ramani, Arun K
Published in Bioinformatics (Oxford, England) (11.10.2021)
Published in Bioinformatics (Oxford, England) (11.10.2021)
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Journal Article
Evaluation of single-cell RNAseq labelling algorithms using cancer datasets
Christensen, Erik, Luo, Ping, Turinsky, Andrei, Husić, Mia, Mahalanabis, Alaina, Naidas, Alaine, Diaz-Mejia, Juan Javier, Brudno, Michael, Pugh, Trevor, Ramani, Arun, Shooshtari, Parisa
Published in Briefings in bioinformatics (19.01.2023)
Published in Briefings in bioinformatics (19.01.2023)
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Journal Article
Clinical Implementation of MetaFusion for Accurate Cancer-Driving Fusion Detection from RNA Sequencing
Apostolides, Michael, Li, Michael, Arnoldo, Anthony, Ku, Michelle, Husić, Mia, Ramani, Arun K., Brudno, Michael, Turinsky, Andrei, Hawkins, Cynthia, Siddaway, Robert
Published in The Journal of molecular diagnostics : JMD (01.12.2023)
Published in The Journal of molecular diagnostics : JMD (01.12.2023)
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Journal Article
PhenoPad: Building AI enabled note-taking interfaces for patient encounters
Wang, Jixuan, Yang, Jingbo, Zhang, Haochi, Lu, Helen, Skreta, Marta, Husić, Mia, Arbabi, Aryan, Sultanum, Nicole, Brudno, Michael
Published in NPJ digital medicine (27.01.2022)
Published in NPJ digital medicine (27.01.2022)
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Journal Article
CReSCENT: CanceR Single Cell ExpressioN Toolkit
Mohanraj, Suluxan, Díaz-Mejía, J Javier, Pham, Martin D, Elrick, Hillary, Husić, Mia, Rashid, Shaikh, Luo, Ping, Bal, Prabnur, Lu, Kevin, Patel, Samarth, Mahalanabis, Alaina, Naidas, Alaine, Christensen, Erik, Croucher, Danielle, Richards, Laura M, Shooshtari, Parisa, Brudno, Michael, Ramani, Arun K, Pugh, Trevor J
Published in Nucleic acids research (02.07.2020)
Published in Nucleic acids research (02.07.2020)
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Journal Article
Phenotate: crowdsourcing phenotype annotations as exercises in undergraduate classes
Chang, Willie H., Mashouri, Pouria, Lozano, Alexander X., Johnstone, Brittney, Husić, Mia, Olry, Annie, Maiella, Sylvie, Balci, Tugce B., Sawyer, Sarah L., Robinson, Peter N., Rath, Ana, Brudno, Michael
Published in Genetics in medicine (01.08.2020)
Published in Genetics in medicine (01.08.2020)
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Journal Article
Activity of the Carboxy-Terminal Peptide Region of the Teneurins and Its Role in Neuronal Function and Behavior in Mammals
Hogg, David W, Husić, Mia, Wosnick, David, Dodsworth, Thomas, D'Aquila, Andrea L, Lovejoy, David A
Published in Frontiers in neuroscience (31.07.2019)
Published in Frontiers in neuroscience (31.07.2019)
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Journal Article
Evaluation of single-cell RNA-seq clustering algorithms on cancer tumor datasets
Mahalanabis, Alaina, Turinsky, Andrei L., Husić, Mia, Christensen, Erik, Luo, Ping, Naidas, Alaine, Brudno, Michael, Pugh, Trevor, Ramani, Arun K., Shooshtari, Parisa
Published in Computational and structural biotechnology journal (01.01.2022)
Published in Computational and structural biotechnology journal (01.01.2022)
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Journal Article
Correction: Phenotate: crowdsourcing phenotype annotations as exercises in undergraduate classes
Chang, Willie H., Mashouri, Pouria, Lozano, Alexander X., Johnstone, Brittney, Husić, Mia, Olry, Annie, Maiella, Sylvie, Balci, Tugce B., Sawyer, Sarah L., Robinson, Peter N., Rath, Ana, Brudno, Michael
Published in Genetics in medicine (01.08.2020)
Published in Genetics in medicine (01.08.2020)
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Journal Article
Ancient interaction between the teneurin C-terminal associated peptides (TCAP) and latrophilin ligand-receptor coupling: a role in behavior
Woelfle, Rebecca, D'Aquila, Andrea L, Pavlović, Téa, Husić, Mia, Lovejoy, David A
Published in Frontiers in neuroscience (24.04.2015)
Published in Frontiers in neuroscience (24.04.2015)
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Journal Article
TMExplorer: A tumour microenvironment single-cell RNAseq database and search tool
Erik Christensen, Alaine Naidas, David Chen, Mia Husic, Parisa Shooshtari
Published in PloS one (01.01.2022)
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Published in PloS one (01.01.2022)
Journal Article
Phenotate: crowdsourcing phenotype annotations as exercises inundergraduate classes
Chang, Willie H, Mashouri Pouria, Lozano, Alexander X, Johnstone Brittney, Husić Mia, Olry Annie, Maiella Sylvie, Balci, Tugce B, Sawyer, Sarah L, Robinson, Peter N, Rath, Ana, Brudno, Michael
Published in Genetics in medicine (01.08.2020)
Published in Genetics in medicine (01.08.2020)
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Journal Article
CReSCENT: CanceR Single Cell ExpressioN Toolkit
Mohanraj, Suluxan, Diaz-Mejia, J Javier, Pham, Martin, Elrick, Hillary, Husic, Mia, Shaikh Rashid, Luo, Ping, Bal, Prabnur, Lu, Kevin, Patel, Samarth, Mahalanabis, Alaina, Naidas, Alaine, Christensen, Erik, Croucher, Danielle, Richards, Laura, Shooshtari, Parisa, Brudno, Michael, Ramani, Arun, Pugh, Trevor J
Published in bioRxiv (29.04.2020)
Published in bioRxiv (29.04.2020)
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Paper
CanDIG: Secure Federated Genomic Queries and Analyses Across Jurisdictions
Lewis, Jonathan Dursi, Bozoky, Zoltan, De Borja, Richard, Li, Jimmy, Bujold, David, Lipski, Adam, Shaikh Farhan Rashid, Sethi, Amanjeev, Memon, Neelam, Naidoo, Dashaylan, Coral-Sasso, Felipe, Wong, Matthew, P-O Quirion, Lu, Zhibin, Agarwal, Samarth, Pavlov, Kat, Ponomarev, Andrew, Husic, Mia, Pace, Krista, Palmer, Samantha L, Grover, Stephanie A, Hakgor, Sevan, Siu, Lillian L, Malkin, David, Virtanen, Carl, Pugh, Trevor J, Pierre-Étienne, Jacques, Joly, Yann, Jones, Steven J M, Bourque, Guillaume, Brudno, Michael
Published in bioRxiv (31.03.2021)
Published in bioRxiv (31.03.2021)
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