Performance comparison of one-color and two-color platforms within the Microarray Quality Control (MAQC) project
Patterson, Tucker A, Lobenhofer, Edward K, Fulmer-Smentek, Stephanie B, Collins, Patrick J, Chu, Tzu-Ming, Bao, Wenjun, Fang, Hong, Kawasaki, Ernest S, Hager, Janet, Tikhonova, Irina R, Walker, Stephen J, Zhang, Liang, Hurban, Patrick, de Longueville, Francoise, Fuscoe, James C, Tong, Weida, Shi, Leming, Wolfinger, Russell D
Published in Nature biotechnology (01.09.2006)
Published in Nature biotechnology (01.09.2006)
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Journal Article
MicroRNA expression detected by oligonucleotide microarrays: system establishment and expression profiling in human tissues
Barad, Omer, Meiri, Eti, Avniel, Amir, Aharonov, Ranit, Barzilai, Adi, Bentwich, Isaac, Einav, Uri, Gilad, Shlomit, Hurban, Patrick, Karov, Yael, Lobenhofer, Edward K, Sharon, Eilon, Shiboleth, Yoel M, Shtutman, Marat, Bentwich, Zvi, Einat, Paz
Published in Genome research (01.12.2004)
Published in Genome research (01.12.2004)
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Journal Article
Efficient and accurate whole genome assembly and methylome profiling of E. coli
Powers, Jason G, Weigman, Victor J, Shu, Jenny, Pufky, John M, Cox, Donald, Hurban, Patrick
Published in BMC genomics (03.10.2013)
Published in BMC genomics (03.10.2013)
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High-throughput toxicogenomic screening of chemicals in the environment using metabolically competent hepatic cell cultures
Franzosa, Jill A, Bonzo, Jessica A, Jack, John, Baker, Nancy C, Kothiya, Parth, Witek, Rafal P, Hurban, Patrick, Siferd, Stephen, Hester, Susan, Shah, Imran, Ferguson, Stephen S, Houck, Keith A, Wambaugh, John F
Published in NPJ systems biology and applications (27.01.2021)
Published in NPJ systems biology and applications (27.01.2021)
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Journal Article
A newly-developed community microarray resource for transcriptome profiling in Brassica species enables the confirmation of Brassica-specific expressed sequences
Trick, Martin, Cheung, Foo, Drou, Nizar, Fraser, Fiona, Lobenhofer, Edward K, Hurban, Patrick, Magusin, Andreas, Town, Christopher D, Bancroft, Ian
Published in BMC plant biology (08.05.2009)
Published in BMC plant biology (08.05.2009)
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Journal Article
Identification of Primary Transcriptional Regulation of Cell Cycle-Regulated Genes upon DNA Damage
Zhou, Tong, Chou, Jeff, Mullen, Thomas E., Elkon, Rani, Zhou, Yingchun, Simpson, Dennis A., Bushel, Pierre R., Paules, Richard S., Lobenhofer, Edward K., Hurban, Patrick, Kaufmann, William K.
Published in Cell cycle (Georgetown, Tex.) (15.04.2007)
Published in Cell cycle (Georgetown, Tex.) (15.04.2007)
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Journal Article
Abstract 1626: Sensitive detection of MET exon 14 skipping by RT-qPCR and next generation sequencing
Patel, Mukund, Polur, Honey, Hurban, Patrick
Published in Cancer research (Chicago, Ill.) (01.07.2018)
Published in Cancer research (Chicago, Ill.) (01.07.2018)
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Abstract 3114: Analytical validation of Illumina's TruSight Oncology 500 ctDNA assay
Verhein, Kirsten C., Hariani, Gunjan, Hastings, Stephanie B., Hurban, Patrick
Published in Cancer research (Chicago, Ill.) (15.08.2020)
Published in Cancer research (Chicago, Ill.) (15.08.2020)
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Abstract 429: Optimization of an RNA sequencing method for low-quantity degraded samples
Su, Dan, Powers, Jason G., Halsey, Thomas A., Hurban, Patrick
Published in Cancer research (Chicago, Ill.) (01.07.2018)
Published in Cancer research (Chicago, Ill.) (01.07.2018)
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Abstract 1346: Panel-based tumor mutational burden (TMB) analysis of matched tumor and plasma specimens using Illumina’s TruSight Oncology 500 next-generation sequencing assay
Hastings, Stephanie B., Hariani, Gunjan, Weigman, Victor J., Jiang, Tingting, Zhao, Chen, Raja, Rajiv, Pawlowski, Traci, Brohawn, Philip, Hurban, Patrick
Published in Cancer research (Chicago, Ill.) (01.07.2019)
Published in Cancer research (Chicago, Ill.) (01.07.2019)
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Journal Article
Rat toxicogenomic study reveals analytical consistency across microarray platforms
Guo, Lei, Shi, Leming, Lobenhofer, Edward K, Wang, Charles, Shippy, Richard, Harris, Stephen C, Zhang, Lu, Mei, Nan, Chen, Tao, Herman, Damir, Goodsaid, Federico M, Hurban, Patrick, Phillips, Kenneth L, Xu, Jun, Deng, Xutao, Sun, Yongming Andrew, Tong, Weida, Dragan, Yvonne P
Published in Nature biotechnology (01.09.2006)
Published in Nature biotechnology (01.09.2006)
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Journal Article
The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
Shi, Leming, Reid, Laura H, Jones, Wendell D, Warrington, Janet A, Baker, Shawn C, Collins, Patrick J, de Longueville, Francoise, Lee, Kathleen Y, Luo, Yuling, Sun, Yongming Andrew, Willey, James C, Setterquist, Robert A, Fischer, Gavin M, Tong, Weida, Dragan, Yvonne P, Frueh, Felix W, Goodsaid, Frederico M, Herman, Damir, Jensen, Roderick V, Johnson, Charles D, Puri, Raj K, Schrf, Uwe, Wolber, Paul K, Zhang, Lu, Amur, Shashi, Bao, Wenjun, Barbacioru, Catalin C, Lucas, Anne Bergstrom, Bertholet, Vincent, Bromley, Bud, Brunner, Alan, Canales, Roger, Cao, Xiaoxi Megan, Cebula, Thomas A, Chen, James J, Cheng, Jing, Chu, Tzu-Ming, Chudin, Eugene, Corson, John, Corton, J Christopher, Davies, Christopher, Davison, Timothy S, Delenstarr, Glenda, Deng, Xutao, Dorris, David, Eklund, Aron C, Fan, Xiao-hui, Fulmer-Smentek, Stephanie, Fuscoe, James C, Gallagher, Kathryn, Ge, Weigong, Hager, Janet, Han, Jing, Han, Tao, Harbottle, Heather C, Harris, Stephen C, Hatchwell, Eli, Hauser, Craig A, Hester, Susan, Hong, Huixiao, Jackson, Scott A, Ji, Hanlee, Knight, Charles R, Kuo, Winston P, Levy, Shawn, Li, Quan-Zhen, Liu, Ying, Ma, Yunqing, Magnuson, Scott R, McDaniel, Tim, Mei, Nan, Ning, Baitang, Novoradovskaya, Natalia, Orr, Michael S, Osborn, Terry W, Patterson, Tucker A, Perkins, Roger G, Peters, Elizabeth H, Peterson, Ron, Philips, Kenneth L, Pine, P Scott, Ren, Hongzu, Rosen, Mitch, Schena, Mark, Smith, Dave D, Staedtler, Frank, Sun, Hongmei, Szallasi, Zoltan, Tezak, Zivana, Thierry-Mieg, Danielle, Thompson, Karol L, Tikhonova, Irina, Turpaz, Yaron, Vallanat, Beena, Van, Christophe, Walker, Stephen J, Wang, Yonghong, Wolfinger, Russ, Wu, Jie, Yang, Wen
Published in Nature biotechnology (01.09.2006)
Published in Nature biotechnology (01.09.2006)
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Abstract 5410: Optimization and evaluation of SMART-Seq v4 kit for low input RNA sequencing
Su, Dan, Halsey, Thomas, Buchkovich, Martin, Powers, Jason G., Abbott, Steven, Shu, Jenny, Pufky, John, Chang, Michell, Weigman, Victor, Hurban, Patrick
Published in Cancer research (Chicago, Ill.) (01.07.2017)
Published in Cancer research (Chicago, Ill.) (01.07.2017)
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Journal Article
Design, Optimization, and Multisite Evaluation of a Targeted Next-Generation Sequencing Assay System for Chimeric RNAs from Gene Fusions and Exon-Skipping Events in Non–Small Cell Lung Cancer
Blidner, Richard A., Haynes, Brian C., Hyter, Stephen, Schmitt, Sarah, Pessetto, Ziyan Y., Godwin, Andrew K., Su, Dan, Hurban, Patrick, van Kempen, Léon C., Aguirre, Maria L., Gokul, Shobha, Cardwell, Robyn D., Latham, Gary J.
Published in The Journal of molecular diagnostics : JMD (01.03.2019)
Published in The Journal of molecular diagnostics : JMD (01.03.2019)
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Abstract 1764: Accurate and reproducible detection of fusions and exon skipping events in NSCLC-derived samples using a comprehensive, targeted RNA-Seq system across multiple laboratories
Latham, Gary J., Blidner, Richard, Haynes, Brian C., Gokul, Shobha, Aguirre, Maria L., Hyter, Stephen, Pessetto, Ziyan Y., Curtis, Maria, Su, Dan, Halsey, Tom, Weigman, Victor, Hurban, Patrick, Godwin, Andrew K., Kempen, Leon C. van
Published in Cancer research (Chicago, Ill.) (01.07.2017)
Published in Cancer research (Chicago, Ill.) (01.07.2017)
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Abstract 4496: Genomic profiling of late stage tumors powering precision medicine in Japan
Kanai, Masashi, Schu, Matthew, Sakuma, Tomohiro, Abbott, Steven, Kou, Tadayuki, Gagnon, Ross, Halsey, Thomas, Matsumoto, Shigemi, Kamada, Mayumi, Nakatsui, Masahiko, Okuno, Yasushi, Hiroshima, Akinori, Mochizuki, Hiroaki, Hurban, Patrick, Muto, Manabu, Weigman, Victor J.
Published in Cancer research (Chicago, Ill.) (15.07.2016)
Published in Cancer research (Chicago, Ill.) (15.07.2016)
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