VALENCIA: a nearest centroid classification method for vaginal microbial communities based on composition
France, Michael T, Ma, Bing, Gajer, Pawel, Brown, Sarah, Humphrys, Michael S, Holm, Johanna B, Waetjen, L Elaine, Brotman, Rebecca M, Ravel, Jacques
Published in Microbiome (23.11.2020)
Published in Microbiome (23.11.2020)
Get full text
Journal Article
A comprehensive non-redundant gene catalog reveals extensive within-community intraspecies diversity in the human vagina
Ma, Bing, France, Michael T, Crabtree, Jonathan, Holm, Johanna B, Humphrys, Michael S, Brotman, Rebecca M, Ravel, Jacques
Published in Nature communications (26.02.2020)
Published in Nature communications (26.02.2020)
Get full text
Journal Article
Insight into the ecology of vaginal bacteria through integrative analyses of metagenomic and metatranscriptomic data
France, Michael T, Fu, Li, Rutt, Lindsay, Yang, Hongqiu, Humphrys, Michael S, Narina, Shilpa, Gajer, Pawel M, Ma, Bing, Forney, Larry J, Ravel, Jacques
Published in Genome Biology (01.03.2022)
Published in Genome Biology (01.03.2022)
Get full text
Journal Article
The Cervicovaginal Microbiota-Host Interaction Modulates Chlamydia trachomatis Infection
Edwards, Vonetta L, Smith, Steven B, McComb, Elias J, Tamarelle, Jeanne, Ma, Bing, Humphrys, Michael S, Gajer, Pawel, Gwilliam, Kathleen, Schaefer, Alison M, Lai, Samuel K, Terplan, Mishka, Mark, Katrina S, Brotman, Rebecca M, Forney, Larry J, Bavoil, Patrik M, Ravel, Jacques
Published in mBio (13.08.2019)
Published in mBio (13.08.2019)
Get full text
Journal Article
Enhanced Trapping of HIV-1 by Human Cervicovaginal Mucus Is Associated with Lactobacillus crispatus-Dominant Microbiota
Nunn, Kenetta L, Wang, Ying-Ying, Harit, Dimple, Humphrys, Michael S, Ma, Bing, Cone, Richard, Ravel, Jacques, Lai, Samuel K
Published in mBio (06.10.2015)
Published in mBio (06.10.2015)
Get full text
Journal Article
The effect of cigarette smoking on the oral and nasal microbiota
Yu, Guoqin, Phillips, Stephen, Gail, Mitchell H, Goedert, James J, Humphrys, Michael S, Ravel, Jacques, Ren, Yanfang, Caporaso, Neil E
Published in Microbiome (17.01.2017)
Published in Microbiome (17.01.2017)
Get full text
Journal Article
Molecular Characterization of the Human Stomach Microbiota in Gastric Cancer Patients
Yu, Guoqin, Torres, Javier, Hu, Nan, Medrano-Guzman, Rafael, Herrera-Goepfert, Roberto, Humphrys, Michael S, Wang, Lemin, Wang, Chaoyu, Ding, Ti, Ravel, Jacques, Taylor, Philip R, Abnet, Christian C, Goldstein, Alisa M
Published in Frontiers in cellular and infection microbiology (06.07.2017)
Published in Frontiers in cellular and infection microbiology (06.07.2017)
Get full text
Journal Article
Nonoptimal Vaginal Microbiota After Azithromycin Treatment for Chlamydia trachomatis Infection
Tamarelle, Jeanne, Ma, Bing, Gajer, Pawel, Humphrys, Mike S, Terplan, Mishka, Mark, Katrina S, Thiébaut, Anne C M, Forney, Larry J, Brotman, Rebecca M, Delarocque-Astagneau, Elisabeth, Bavoil, Patrik M, Ravel, Jacques
Published in The Journal of infectious diseases (03.02.2020)
Published in The Journal of infectious diseases (03.02.2020)
Get full text
Journal Article
Simultaneous transcriptional profiling of bacteria and their host cells
Humphrys, Michael S, Creasy, Todd, Sun, Yezhou, Shetty, Amol C, Chibucos, Marcus C, Drabek, Elliott F, Fraser, Claire M, Farooq, Umar, Sengamalay, Naomi, Ott, Sandy, Shou, Huizhong, Bavoil, Patrik M, Mahurkar, Anup, Myers, Garry S A
Published in PloS one (04.12.2013)
Published in PloS one (04.12.2013)
Get full text
Journal Article
Ultrahigh-Throughput Multiplexing and Sequencing of >500-Base-Pair Amplicon Regions on the Illumina HiSeq 2500 Platform
Holm, Johanna B, Humphrys, Michael S, Robinson, Courtney K, Settles, Matthew L, Ott, Sandra, Fu, Li, Yang, Hongqiu, Gajer, Pawel, He, Xin, McComb, Elias, Gravitt, Patti E, Ghanem, Khalil G, Brotman, Rebecca M, Ravel, Jacques
Published in mSystems (01.01.2019)
Published in mSystems (01.01.2019)
Get full text
Journal Article
Association of HPV infection and clearance with cervicovaginal immunology and the vaginal microbiota
Shannon, B, Yi, T J, Perusini, S, Gajer, P, Ma, B, Humphrys, M S, Thomas-Pavanel, J, Chieza, L, Janakiram, P, Saunders, M, Tharao, W, Huibner, S, Shahabi, K, Ravel, J, Rebbapragada, A, Kaul, R
Published in Mucosal immunology (01.09.2017)
Published in Mucosal immunology (01.09.2017)
Get full text
Journal Article
A Laboratory Methodology for Dual RNA-Sequencing of Bacteria and their Host Cells In Vitro
Marsh, James W, Humphrys, Michael S, Myers, Garry S A
Published in Frontiers in microbiology (21.09.2017)
Published in Frontiers in microbiology (21.09.2017)
Get full text
Journal Article
Chromatin accessibility dynamics of Chlamydia-infected epithelial cells
Hayward, Regan J, Marsh, James W, Humphrys, Michael S, Huston, Wilhelmina M, Myers, Garry S A
Published in Epigenetics & chromatin (27.10.2020)
Published in Epigenetics & chromatin (27.10.2020)
Get full text
Journal Article
Early Transcriptional Landscapes of Chlamydia trachomatis -Infected Epithelial Cells at Single Cell Resolution
Hayward, Regan J, Marsh, James W, Humphrys, Michael S, Huston, Wilhelmina M, Myers, Garry S A
Published in Frontiers in cellular and infection microbiology (19.11.2019)
Published in Frontiers in cellular and infection microbiology (19.11.2019)
Get full text
Journal Article
Impact of the griffithsin anti-HIV microbicide and placebo gels on the rectal mucosal proteome and microbiome in non-human primates
Girard, Lauren, Birse, Kenzie, Holm, Johanna B, Gajer, Pawel, Humphrys, Mike S, Garber, David, Guenthner, Patricia, Noël-Romas, Laura, Abou, Max, McCorrister, Stuart, Westmacott, Garrett, Wang, Lin, Rohan, Lisa C, Matoba, Nobuyuki, McNicholl, Janet, Palmer, Kenneth E, Ravel, Jacques, Burgener, Adam D
Published in Scientific reports (23.05.2018)
Published in Scientific reports (23.05.2018)
Get full text
Journal Article
Distinct Effects of the Cervicovaginal Microbiota and Herpes Simplex Type 2 Infection on Female Genital Tract Immunology
Shannon, B., Gajer, P., Yi, T. J., Ma, B., Humphrys, M. S., Thomas-Pavanel, J., Chieza, L., Janakiram, P., Saunders, M., Tharao, W., Huibner, S., Shahabi, K., Ravel, J., Kaul, R.
Published in The Journal of infectious diseases (01.05.2017)
Published in The Journal of infectious diseases (01.05.2017)
Get full text
Journal Article
Group B Streptococcus and the Vaginal Microbiota
Rosen, Geoffrey H., Randis, Tara M., Desai, Purnahamsi V., Sapra, Katherine J., Ma, Bing, Gajer, Pawel, Humphrys, Michael S., Ravel, Jacques, Gelber, Shari E., Ratner, Adam J.
Published in The Journal of infectious diseases (15.09.2017)
Published in The Journal of infectious diseases (15.09.2017)
Get full text
Journal Article
NsrR targets in the Escherichia coli genome: new insights into DNA sequence requirements for binding and a role for NsrR in the regulation of motility
Partridge, Jonathan D, Bodenmiller, Diane M, Humphrys, Michael S, Spiro, Stephen
Published in Molecular microbiology (01.08.2009)
Published in Molecular microbiology (01.08.2009)
Get full text
Journal Article