The Length Distribution and Multiple Specificity of Naturally Presented HLA-I Ligands
Gfeller, David, Guillaume, Philippe, Michaux, Justine, Pak, Hui-Song, Daniel, Roy T, Racle, Julien, Coukos, George, Bassani-Sternberg, Michal
Published in The Journal of immunology (1950) (15.12.2018)
Published in The Journal of immunology (1950) (15.12.2018)
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Journal Article
Estimating the Contribution of Proteasomal Spliced Peptides to the HLA-I Ligandome
Mylonas, Roman, Beer, Ilan, Iseli, Christian, Chong, Chloe, Pak, Hui-Song, Gfeller, David, Coukos, George, Xenarios, Ioannis, Müller, Markus, Bassani-Sternberg, Michal
Published in Molecular & cellular proteomics (01.12.2018)
Published in Molecular & cellular proteomics (01.12.2018)
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Journal Article
Biogenesis of HLA Ligand Presentation in Immune Cells Upon Activation Reveals Changes in Peptide Length Preference
Marino, Fabio, Semilietof, Aikaterini, Michaux, Justine, Pak, Hui-Song, Coukos, George, Müller, Markus, Bassani-Sternberg, Michal
Published in Frontiers in immunology (28.08.2020)
Published in Frontiers in immunology (28.08.2020)
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Journal Article
Quantitative Shotgun Proteomics Unveils Candidate Novel Esophageal Adenocarcinoma (EAC)-specific Proteins
O'Neill, J. Robert, Pak, Hui-Song, Pairo-Castineira, Erola, Save, Vicki, Paterson-Brown, Simon, Nenutil, Rudolf, Vojtěšek, Bořivoj, Overton, Ian, Scherl, Alex, Hupp, Ted R.
Published in Molecular & cellular proteomics (01.06.2017)
Published in Molecular & cellular proteomics (01.06.2017)
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Journal Article
Bci528I, a new isoschizomer of EcoRI isolated from Bacillus circulans 528
Ra, Sung-Ryong, Kim, Myong-Suk, Paek, Chon-IL, Pak, Yong-Chol, Pak, Song-Hui, Pak, Hyong-Bom, Ri, Kum-Chol
Published in Folia microbiologica (01.11.2019)
Published in Folia microbiologica (01.11.2019)
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Journal Article
Mass Spectrometry Based Immunopeptidomics Leads to Robust Predictions of Phosphorylated HLA Class I Ligands
Solleder, Marthe, Guillaume, Philippe, Racle, Julien, Michaux, Justine, Pak, Hui-Song, Müller, Markus, Coukos, George, Bassani-Sternberg, Michal, Gfeller, David
Published in Molecular & cellular proteomics (01.02.2020)
Published in Molecular & cellular proteomics (01.02.2020)
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Journal Article
Immunopeptidomics of colorectal cancer organoids reveals a sparse HLA class I neoantigen landscape and no increase in neoantigens with interferon or MEK-inhibitor treatment
Newey, Alice, Griffiths, Beatrice, Michaux, Justine, Pak, Hui Song, Stevenson, Brian J., Woolston, Andrew, Semiannikova, Maria, Spain, Georgia, Barber, Louise J., Matthews, Nik, Rao, Sheela, Watkins, David, Chau, Ian, Coukos, George, Racle, Julien, Gfeller, David, Starling, Naureen, Cunningham, David, Bassani-Sternberg, Michal, Gerlinger, Marco
Published in Journal for immunotherapy of cancer (18.11.2019)
Published in Journal for immunotherapy of cancer (18.11.2019)
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Journal Article
Sensitive Immunopeptidomics by Leveraging Available Large-Scale Multi-HLA Spectral Libraries, Data-Independent Acquisition, and MS/MS Prediction
Pak, HuiSong, Michaux, Justine, Huber, Florian, Chong, Chloe, Stevenson, Brian J., Müller, Markus, Coukos, George, Bassani-Sternberg, Michal
Published in Molecular & cellular proteomics (01.01.2021)
Published in Molecular & cellular proteomics (01.01.2021)
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Journal Article
Deciphering HLA-I motifs across HLA peptidomes improves neo-antigen predictions and identifies allostery regulating HLA specificity
Bassani-Sternberg, Michal, Chong, Chloé, Guillaume, Philippe, Solleder, Marthe, Pak, HuiSong, Gannon, Philippe O, Kandalaft, Lana E, Coukos, George, Gfeller, David
Published in PLoS computational biology (01.08.2017)
Published in PLoS computational biology (01.08.2017)
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Journal Article
Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes
Chong, Chloe, Müller, Markus, Pak, HuiSong, Harnett, Dermot, Huber, Florian, Grun, Delphine, Leleu, Marion, Auger, Aymeric, Arnaud, Marion, Stevenson, Brian J, Michaux, Justine, Bilic, Ilija, Hirsekorn, Antje, Calviello, Lorenzo, Simó-Riudalbas, Laia, Planet, Evarist, Lubiński, Jan, Bryśkiewicz, Marta, Wiznerowicz, Maciej, Xenarios, Ioannis, Zhang, Lin, Trono, Didier, Harari, Alexandre, Ohler, Uwe, Coukos, George, Bassani-Sternberg, Michal
Published in Nature communications (10.03.2020)
Published in Nature communications (10.03.2020)
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Journal Article
Tryptophan depletion results in tryptophan-to-phenylalanine substitutants
Pataskar, Abhijeet, Champagne, Julien, Nagel, Remco, Kenski, Juliana, Laos, Maarja, Michaux, Justine, Pak, Hui Song, Bleijerveld, Onno B, Mordente, Kelly, Navarro, Jasmine Montenegro, Blommaert, Naomi, Nielsen, Morten M, Lovecchio, Domenica, Stone, Everett, Georgiou, George, de Gooijer, Mark C, van Tellingen, Olaf, Altelaar, Maarten, Joosten, Robbie P, Perrakis, Anastassis, Olweus, Johanna, Bassani-Sternberg, Michal, Peeper, Daniel S, Agami, Reuven
Published in Nature (London) (24.03.2022)
Published in Nature (London) (24.03.2022)
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Journal Article
A Cluster of Evolutionarily Recent KRAB Zinc Finger Proteins Protects Cancer Cells from Replicative Stress-Induced Inflammation
Martins, Filipe, Rosspopoff, Olga, Carlevaro-Fita, Joana, Forey, Romain, Offner, Sandra, Planet, Evarist, Pulver, Cyril, Pak, HuiSong, Huber, Florian, Michaux, Justine, Bassani-Sternberg, Michal, Turelli, Priscilla, Trono, Didier
Published in Cancer research (Chicago, Ill.) (15.03.2024)
Published in Cancer research (Chicago, Ill.) (15.03.2024)
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Journal Article
CIITA-Transduced Glioblastoma Cells Uncover a Rich Repertoire of Clinically Relevant Tumor-Associated HLA-II Antigens
Forlani, Greta, Michaux, Justine, Pak, HuiSong, Huber, Florian, Marie Joseph, Elodie Lauret, Ramia, Elise, Stevenson, Brian J., Linnebacher, Michael, Accolla, Roberto S., Bassani-Sternberg, Michal
Published in Molecular & cellular proteomics (01.01.2021)
Published in Molecular & cellular proteomics (01.01.2021)
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Journal Article
A microfluidics-enabled automated workflow of sample preparation for MS-based immunopeptidomics
Li, Xiaokang, Pak, Hui Song, Huber, Florian, Michaux, Justine, Taillandier-Coindard, Marie, Altimiras, Emma Ricart, Bassani-Sternberg, Michal
Published in Cell reports methods (26.06.2023)
Published in Cell reports methods (26.06.2023)
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Journal Article
Author Correction: Tryptophan depletion results in tryptophanto- phenylalanine substitutants
Pataskar, Abhijeet, Champagne, Julien, Nagel, Remco, Kenski, Juliana, Laos, Maarja, Michaux, Justine, Pak, Hui Song, Bleijerveld, Onno B, Mordente, Kelly, Navarro, Jasmine Montenegro, Blommaert, Naomi, Nielsen, Morten M, Lovecchio, Domenica, Stone, Everett, Georgiou, George, de Gooijer, Mark C, van Tellingen, Olaf, Altelaar, Maarten, Joosten, Robbie P, Perrakis, Anastassis, Olweus, Johanna, Bassani-Sternberg, Michal, Peeper, Daniel S, Agami, Reuven
Published in Nature (London) (11.08.2022)
Published in Nature (London) (11.08.2022)
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Journal Article
Immunopeptidomics-based identification of naturally presented non-canonical circRNA-derived peptides
Ferreira, Humberto J, Stevenson, Brian J, Pak, HuiSong, Yu, Fengchao, Almeida Oliveira, Jessica, Huber, Florian, Taillandier-Coindard, Marie, Michaux, Justine, Ricart-Altimiras, Emma, Kraemer, Anne I, Kandalaft, Lana E, Speiser, Daniel E, Nesvizhskii, Alexey I, Müller, Markus, Bassani-Sternberg, Michal
Published in Nature communications (15.03.2024)
Published in Nature communications (15.03.2024)
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Journal Article
Author Correction: Tryptophan depletion results in tryptophan-to-phenylalanine substitutants
Pataskar, Abhijeet, Champagne, Julien, Nagel, Remco, Kenski, Juliana, Laos, Maarja, Michaux, Justine, Pak, Hui Song, Bleijerveld, Onno B., Mordente, Kelly, Navarro, Jasmine Montenegro, Blommaert, Naomi, Nielsen, Morten M., Lovecchio, Domenica, Stone, Everett, Georgiou, George, de Gooijer, Mark C., van Tellingen, Olaf, Altelaar, Maarten, Joosten, Robbie P., Perrakis, Anastassis, Olweus, Johanna, Bassani-Sternberg, Michal, Peeper, Daniel S., Agami, Reuven
Published in Nature (London) (11.08.2022)
Published in Nature (London) (11.08.2022)
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Journal Article
Reversion analysis reveals the in vivo immunogenicity of a poorly MHC I-binding cancer neoepitope
Ebrahimi-Nik, Hakimeh, Moussa, Marmar, Englander, Ryan P, Singhaviranon, Summit, Michaux, Justine, Pak, HuiSong, Miyadera, Hiroko, Corwin, William L, Keller, Grant L J, Hagymasi, Adam T, Shcheglova, Tatiana V, Coukos, George, Baker, Brian M, Mandoiu, Ion I, Bassani-Sternberg, Michal, Srivastava, Pramod K
Published in Nature communications (05.11.2021)
Published in Nature communications (05.11.2021)
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Journal Article
The immunopeptidome landscape associated with T cell infiltration, inflammation and immune editing in lung cancer
Kraemer, Anne I, Chong, Chloe, Huber, Florian, Pak, HuiSong, Stevenson, Brian J, Müller, Markus, Michaux, Justine, Altimiras, Emma Ricart, Rusakiewicz, Sylvie, Simó-Riudalbas, Laia, Planet, Evarist, Wiznerowicz, Maciej, Dagher, Julien, Trono, Didier, Coukos, George, Tissot, Stephanie, Bassani-Sternberg, Michal
Published in Nature cancer (01.05.2023)
Published in Nature cancer (01.05.2023)
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Journal Article
Mass spectrometry driven exploration reveals nuances of neoepitope-driven tumor rejection
Ebrahimi-Nik, Hakimeh, Michaux, Justine, Corwin, William L, Keller, Grant Lj, Shcheglova, Tatiana, Pak, HuiSong, Coukos, George, Baker, Brian M, Mandoiu, Ion I, Bassani-Sternberg, Michal, Srivastava, Pramod K
Published in JCI insight (25.07.2019)
Published in JCI insight (25.07.2019)
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