A comprehensive LFQ benchmark dataset on modern day acquisition strategies in proteomics
Van Puyvelde, Bart, Daled, Simon, Willems, Sander, Gabriels, Ralf, Gonzalez de Peredo, Anne, Chaoui, Karima, Mouton-Barbosa, Emmanuelle, Bouyssié, David, Boonen, Kurt, Hughes, Christopher J, Gethings, Lee A, Perez-Riverol, Yasset, Bloomfield, Nic, Tate, Stephen, Schiltz, Odile, Martens, Lennart, Deforce, Dieter, Dhaenens, Maarten
Published in Scientific data (30.03.2022)
Published in Scientific data (30.03.2022)
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Journal Article
Access to the Phospho-proteome via the Mitigation of Peptide-Metal Interactions
Hughes, Christopher J., Gethings, Lee A., Wilson, Ian D., Plumb, Robert S.
Published in Journal of Chromatography A (21.06.2022)
Published in Journal of Chromatography A (21.06.2022)
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Journal Article
SAVE: Sparsity-Aware Vector Engine for Accelerating DNN Training and Inference on CPUs
Gong, Zhangxiaowen, Ji, Houxiang, Fletcher, Christopher W., Hughes, Christopher J., Baghsorkhi, Sara, Torrellas, Josep
Published in 2020 53rd Annual IEEE/ACM International Symposium on Microarchitecture (MICRO) (01.10.2020)
Published in 2020 53rd Annual IEEE/ACM International Symposium on Microarchitecture (MICRO) (01.10.2020)
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Conference Proceeding
Ion Mobility Tandem Mass Spectrometry Enhances Performance of Bottom-up Proteomics
Helm, Dominic, Vissers, Johannes P.C., Hughes, Christopher J., Hahne, Hannes, Ruprecht, Benjamin, Pachl, Fiona, Grzyb, Arkadiusz, Richardson, Keith, Wildgoose, Jason, Maier, Stefan K., Marx, Harald, Wilhelm, Mathias, Becher, Isabelle, Lemeer, Simone, Bantscheff, Marcus, Langridge, James I., Kuster, Bernhard
Published in Molecular & cellular proteomics (01.12.2014)
Published in Molecular & cellular proteomics (01.12.2014)
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Journal Article
High-Throughput Microbore Ultrahigh-Performance Liquid Chromatography-Ion Mobility-Enabled-Mass Spectrometry-Based Proteomics Methodology for the Exploratory Analysis of Serum Samples from Large Cohort Studies
Lennon, Sarah, Hughes, Christopher J, Muazzam, Ammara, Townsend, Paul A, Gethings, Lee A, Wilson, Ian D, Plumb, Robert S
Published in Journal of proteome research (05.03.2021)
Published in Journal of proteome research (05.03.2021)
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Journal Article
Scanning Quadrupole Data-Independent Acquisition, Part A: Qualitative and Quantitative Characterization
Moseley, M. Arthur, Hughes, Christopher J, Juvvadi, Praveen R, Soderblom, Erik J, Lennon, Sarah, Perkins, Simon R, Thompson, J. Will, Steinbach, William J, Geromanos, Scott J, Wildgoose, Jason, Langridge, James I, Richardson, Keith, Vissers, Johannes P. C
Published in Journal of proteome research (02.02.2018)
Published in Journal of proteome research (02.02.2018)
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Journal Article
RASA: Efficient Register-Aware Systolic Array Matrix Engine for CPU
Jeong, Geonhwa, Qin, Eric, Samajdar, Ananda, Hughes, Christopher J., Subramoney, Sreenivas, Kim, Hyesoon, Krishna, Tushar
Published in 2021 58th ACM/IEEE Design Automation Conference (DAC) (05.12.2021)
Published in 2021 58th ACM/IEEE Design Automation Conference (DAC) (05.12.2021)
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Conference Proceeding
Quantitative Proteome Analysis of Mouse Liver Lysosomes Provides Evidence for Mannose 6-phosphate-independent Targeting Mechanisms of Acid Hydrolases in Mucolipidosis II
Markmann, Sandra, Krambeck, Svenja, Hughes, Christopher J., Mirzaian, Mina, Aerts, Johannes M.F.G., Saftig, Paul, Schweizer, Michaela, Vissers, Johannes P.C., Braulke, Thomas, Damme, Markus
Published in Molecular & cellular proteomics (01.03.2017)
Published in Molecular & cellular proteomics (01.03.2017)
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Journal Article
VEGETA: Vertically-Integrated Extensions for Sparse/Dense GEMM Tile Acceleration on CPUs
Jeong, Geonhwa, Damani, Sana, Bambhaniya, Abhimanyu Rajeshkumar, Qin, Eric, Hughes, Christopher J., Subramoney, Sreenivas, Kim, Hyesoon, Krishna, Tushar
Published in 2023 IEEE International Symposium on High-Performance Computer Architecture (HPCA) (01.02.2023)
Published in 2023 IEEE International Symposium on High-Performance Computer Architecture (HPCA) (01.02.2023)
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Conference Proceeding
Scanning Quadrupole Data-Independent Acquisition, Part B: Application to the Analysis of the Calcineurin-Interacting Proteins during Treatment of Aspergillus fumigatus with Azole and Echinocandin Antifungal Drugs
Juvvadi, Praveen R, Moseley, M. Arthur, Hughes, Christopher J, Soderblom, Erik J, Lennon, Sarah, Perkins, Simon R, Thompson, J. Will, Geromanos, Scott J, Wildgoose, Jason, Richardson, Keith, Langridge, James I, Vissers, Johannes P. C, Steinbach, William J
Published in Journal of proteome research (02.02.2018)
Published in Journal of proteome research (02.02.2018)
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Journal Article
PleaseTM: Enabling transaction conflict management in requester-wins hardware transactional memory
Sunjae Park, Prvulovic, Milos, Hughes, Christopher J.
Published in 2016 IEEE International Symposium on High Performance Computer Architecture (HPCA) (01.03.2016)
Published in 2016 IEEE International Symposium on High Performance Computer Architecture (HPCA) (01.03.2016)
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Conference Proceeding
Journal Article
Rsim: simulating shared-memory multiprocessors with ILP processors
Hughes, C.J., Pai, V.S., Ranganathan, P., Adve, S.V.
Published in Computer (Long Beach, Calif.) (01.02.2002)
Published in Computer (Long Beach, Calif.) (01.02.2002)
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Journal Article
Performance evaluation of Intel® transactional synchronization extensions for high-performance computing
Yoo, Richard M., Hughes, Christopher J., Lai, Konrad, Rajwar, Ravi
Published in 2013 SC - International Conference for High Performance Computing, Networking, Storage and Analysis (SC) (17.11.2013)
Published in 2013 SC - International Conference for High Performance Computing, Networking, Storage and Analysis (SC) (17.11.2013)
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Conference Proceeding
SYSTEMS AND METHODS FOR IMPLEMENTING CHAINED TILE OPERATIONS
TOLL BRET, CORBAL JESUS, OULD AHMED VALL ELMOUSTAPHA, VALENTINE ROBERT, HUGHES CHRISTOPHER J, HEINECKE ALEXANDER F
Year of Publication 05.01.2023
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Year of Publication 05.01.2023
Patent
Saving energy with architectural and frequency adaptations for multimedia applications
Hughes, C.J., Srinivasan, J., Adve, S.V.
Published in Proceedings of the annual International Symposium on Microarchitecture (2001)
Published in Proceedings of the annual International Symposium on Microarchitecture (2001)
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Conference Proceeding
Journal Article
Impact of lymph node metastasis in differentiated carcinoma of the thyroid: A matched-pair analysis
Hughes, Christopher J., Shaha, Ashok R., Shah, Jatin P., Loree, Thom R.
Published in Head & neck (01.03.1996)
Published in Head & neck (01.03.1996)
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Journal Article
Memory-side prefetching for linked data structures for processor-in-memory systems
Hughes, Christopher J., Adve, Sarita V.
Published in Journal of parallel and distributed computing (01.04.2005)
Published in Journal of parallel and distributed computing (01.04.2005)
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Journal Article
Eye-tracked Evaluation of Subtitles in Immersive VR 360^ Video
Brescia-Zapata, Marta, Krejtz, Krzysztof, Duchowski, Andrew T., Hughes, Christopher J., Orero, Pilar
Published in 2023 IEEE Conference on Virtual Reality and 3D User Interfaces Abstracts and Workshops (VRW) (01.03.2023)
Published in 2023 IEEE Conference on Virtual Reality and 3D User Interfaces Abstracts and Workshops (VRW) (01.03.2023)
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Conference Proceeding