Genome-wide identification of transcription start sites, promoters and transcription factor binding sites in E. coli
Mendoza-Vargas, Alfredo, Olvera, Leticia, Olvera, Maricela, Grande, Ricardo, Vega-Alvarado, Leticia, Taboada, Blanca, Jimenez-Jacinto, Verónica, Salgado, Heladia, Juárez, Katy, Contreras-Moreira, Bruno, Huerta, Araceli M, Collado-Vides, Julio, Morett, Enrique
Published in PloS one (19.10.2009)
Published in PloS one (19.10.2009)
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EcoCyc: fusing model organism databases with systems biology
Keseler, Ingrid M, Mackie, Amanda, Peralta-Gil, Martin, Santos-Zavaleta, Alberto, Gama-Castro, Socorro, Bonavides-Martínez, César, Fulcher, Carol, Huerta, Araceli M, Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Muñiz-Rascado, Luis, Ong, Quang, Paley, Suzanne, Schröder, Imke, Shearer, Alexander G, Subhraveti, Pallavi, Travers, Mike, Weerasinghe, Deepika, Weiss, Verena, Collado-Vides, Julio, Gunsalus, Robert P, Paulsen, Ian, Karp, Peter D
Published in Nucleic acids research (01.01.2013)
Published in Nucleic acids research (01.01.2013)
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Regulatory network of Escherichia coli: consistency between literature knowledge and microarray profiles
Gutiérrez-Ríos, Rosa María, Rosenblueth, David A, Loza, José Antonio, Huerta, Araceli M, Glasner, Jeremy D, Blattner, Fred R, Collado-Vides, Julio
Published in Genome research (01.11.2003)
Published in Genome research (01.11.2003)
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RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more
Salgado, Heladia, Peralta-Gil, Martin, Gama-Castro, Socorro, Santos-Zavaleta, Alberto, Muñiz-Rascado, Luis, García-Sotelo, Jair S, Weiss, Verena, Solano-Lira, Hilda, Martínez-Flores, Irma, Medina-Rivera, Alejandra, Salgado-Osorio, Gerardo, Alquicira-Hernández, Shirley, Alquicira-Hernández, Kevin, López-Fuentes, Alejandra, Porrón-Sotelo, Liliana, Huerta, Araceli M, Bonavides-Martínez, César, Balderas-Martínez, Yalbi I, Pannier, Lucia, Olvera, Maricela, Labastida, Aurora, Jiménez-Jacinto, Verónica, Vega-Alvarado, Leticia, Del Moral-Chávez, Victor, Hernández-Alvarez, Alfredo, Morett, Enrique, Collado-Vides, Julio
Published in Nucleic acids research (01.01.2013)
Published in Nucleic acids research (01.01.2013)
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RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation
Gama-Castro, Socorro, Jiménez-Jacinto, Verónica, Peralta-Gil, Martín, Santos-Zavaleta, Alberto, Peñaloza-Spinola, Mónica I, Contreras-Moreira, Bruno, Segura-Salazar, Juan, Muñiz-Rascado, Luis, Martínez-Flores, Irma, Salgado, Heladia, Bonavides-Martínez, César, Abreu-Goodger, Cei, Rodríguez-Penagos, Carlos, Miranda-Ríos, Juan, Morett, Enrique, Merino, Enrique, Huerta, Araceli M, Treviño-Quintanilla, Luis, Collado-Vides, Julio
Published in Nucleic acids research (01.01.2008)
Published in Nucleic acids research (01.01.2008)
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Journal Article
The EcoCyc Database
Karp, Peter D, Weaver, Daniel, Paley, Suzanne, Fulcher, Carol, Kubo, Aya, Kothari, Anamika, Krummenacker, Markus, Subhraveti, Pallavi, Weerasinghe, Deepika, Gama-Castro, Socorro, Huerta, Araceli M, Muñiz-Rascado, Luis, Bonavides-Martinez, César, Weiss, Verena, Peralta-Gil, Martin, Santos-Zavaleta, Alberto, Schröder, Imke, Mackie, Amanda, Gunsalus, Robert, Collado-Vides, Julio, Keseler, Ingrid M, Paulsen, Ian
Published in Ecosal plus (01.05.2014)
Published in Ecosal plus (01.05.2014)
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Evidence classification of high-throughput protocols and confidence integration in RegulonDB
Weiss, Verena, Medina-Rivera, Alejandra, Huerta, Araceli M, Santos-Zavaleta, Alberto, Salgado, Heladia, Morett, Enrique, Collado-Vides, Julio
Published in Database : the journal of biological databases and curation (2013)
Published in Database : the journal of biological databases and curation (2013)
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Journal Article
distinctive signatures of promoter regions and operon junctions across prokaryotes
Janga, Sarath Chandra, Lamboy, Warren F, Huerta, Araceli M, Moreno-Hagelsieb, Gabriel
Published in Nucleic acids research (01.01.2006)
Published in Nucleic acids research (01.01.2006)
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Journal Article
RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)
Gama-Castro, Socorro, Salgado, Heladia, Peralta-Gil, Martin, Santos-Zavaleta, Alberto, Muñiz-Rascado, Luis, Solano-Lira, Hilda, Jimenez-Jacinto, Verónica, Weiss, Verena, García-Sotelo, Jair S, López-Fuentes, Alejandra, Porrón-Sotelo, Liliana, Alquicira-Hernández, Shirley, Medina-Rivera, Alejandra, Martínez-Flores, Irma, Alquicira-Hernández, Kevin, Martínez-Adame, Ruth, Bonavides-Martínez, César, Miranda-Ríos, Juan, Huerta, Araceli M, Mendoza-Vargas, Alfredo, Collado-Torres, Leonardo, Taboada, Blanca, Vega-Alvarado, Leticia, Olvera, Maricela, Olvera, Leticia, Grande, Ricardo, Morett, Enrique, Collado-Vides, Julio
Published in Nucleic acids research (01.01.2011)
Published in Nucleic acids research (01.01.2011)
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Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Positional conservation of clusters of overlapping promoter-like sequences in enterobacterial genomes
Huerta, Araceli M, Collado-Vides, Julio, Francino, M Pilar
Published in Molecular biology and evolution (01.05.2006)
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Published in Molecular biology and evolution (01.05.2006)
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