Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations
Karcher, Nicolai, Pasolli, Edoardo, Asnicar, Francesco, Huang, Kun D, Tett, Adrian, Manara, Serena, Armanini, Federica, Bain, Debbie, Duncan, Sylvia H, Louis, Petra, Zolfo, Moreno, Manghi, Paolo, Valles-Colomer, Mireia, Raffaetà, Roberta, Rota-Stabelli, Omar, Collado, Maria Carmen, Zeller, Georg, Falush, Daniel, Maixner, Frank, Walker, Alan W, Huttenhower, Curtis, Segata, Nicola
Published in Genome Biology (08.06.2020)
Published in Genome Biology (08.06.2020)
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Journal Article
Metagenomic analysis of ancient dental calculus reveals unexplored diversity of oral archaeal Methanobrevibacter
Granehäll, Lena, Huang, Kun D, Tett, Adrian, Manghi, Paolo, Paladin, Alice, O'Sullivan, Niall, Rota-Stabelli, Omar, Segata, Nicola, Zink, Albert, Maixner, Frank
Published in Microbiome (30.09.2021)
Published in Microbiome (30.09.2021)
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Journal Article
MetaPhlAn 4 profiling of unknown species-level genome bins improves the characterization of diet-associated microbiome changes in mice
Manghi, Paolo, Blanco-Míguez, Aitor, Manara, Serena, NabiNejad, Amir, Cumbo, Fabio, Beghini, Francesco, Armanini, Federica, Golzato, Davide, Huang, Kun D., Thomas, Andrew M., Piccinno, Gianmarco, Punčochář, Michal, Zolfo, Moreno, Lesker, Till R., Bredon, Marius, Planchais, Julien, Glodt, Jeremy, Valles-Colomer, Mireia, Koren, Omry, Pasolli, Edoardo, Asnicar, Francesco, Strowig, Till, Sokol, Harry, Segata, Nicola
Published in Cell reports (Cambridge) (30.05.2023)
Published in Cell reports (Cambridge) (30.05.2023)
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Journal Article
Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4
Blanco-Míguez, Aitor, Beghini, Francesco, Cumbo, Fabio, McIver, Lauren J, Thompson, Kelsey N, Zolfo, Moreno, Manghi, Paolo, Dubois, Leonard, Huang, Kun D, Thomas, Andrew Maltez, Nickols, William A, Piccinno, Gianmarco, Piperni, Elisa, Punčochář, Michal, Valles-Colomer, Mireia, Tett, Adrian, Giordano, Francesca, Davies, Richard, Wolf, Jonathan, Berry, Sarah E, Spector, Tim D, Franzosa, Eric A, Pasolli, Edoardo, Asnicar, Francesco, Huttenhower, Curtis, Segata, Nicola
Published in Nature biotechnology (01.11.2023)
Published in Nature biotechnology (01.11.2023)
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Journal Article
The person-to-person transmission landscape of the gut and oral microbiomes
Valles-Colomer, Mireia, Blanco-Míguez, Aitor, Manghi, Paolo, Asnicar, Francesco, Dubois, Leonard, Golzato, Davide, Armanini, Federica, Cumbo, Fabio, Huang, Kun D, Manara, Serena, Masetti, Giulia, Pinto, Federica, Piperni, Elisa, Punčochář, Michal, Ricci, Liviana, Zolfo, Moreno, Farrant, Olivia, Goncalves, Adriana, Selma-Royo, Marta, Binetti, Ana G, Becerra, Jimmy E, Han, Bei, Lusingu, John, Amuasi, John, Amoroso, Loredana, Visconti, Alessia, Steves, Claire M, Falchi, Mario, Filosi, Michele, Tett, Adrian, Last, Anna, Xu, Qian, Qin, Nan, Qin, Huanlong, May, Jürgen, Eibach, Daniel, Corrias, Maria Valeria, Ponzoni, Mirco, Pasolli, Edoardo, Spector, Tim D, Domenici, Enrico, Collado, Maria Carmen, Segata, Nicola
Published in Nature (London) (02.02.2023)
Published in Nature (London) (02.02.2023)
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Journal Article
The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations
Tett, Adrian, Huang, Kun D., Asnicar, Francesco, Fehlner-Peach, Hannah, Pasolli, Edoardo, Karcher, Nicolai, Armanini, Federica, Manghi, Paolo, Bonham, Kevin, Zolfo, Moreno, De Filippis, Francesca, Magnabosco, Cara, Bonneau, Richard, Lusingu, John, Amuasi, John, Reinhard, Karl, Rattei, Thomas, Boulund, Fredrik, Engstrand, Lars, Zink, Albert, Collado, Maria Carmen, Littman, Dan R., Eibach, Daniel, Ercolini, Danilo, Rota-Stabelli, Omar, Huttenhower, Curtis, Maixner, Frank, Segata, Nicola
Published in Cell host & microbe (13.11.2019)
Published in Cell host & microbe (13.11.2019)
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Journal Article
Maternal and food microbial sources shape the infant microbiome of a rural Ethiopian population
Manara, Serena, Selma-Royo, Marta, Huang, Kun D., Asnicar, Francesco, Armanini, Federica, Blanco-Miguez, Aitor, Cumbo, Fabio, Golzato, Davide, Manghi, Paolo, Pinto, Federica, Valles-Colomer, Mireia, Amoroso, Loredana, Corrias, Maria Valeria, Ponzoni, Mirco, Raffaetà, Roberta, Cabrera-Rubio, Raul, Olcina, Mari, Pasolli, Edoardo, Collado, Maria Carmen, Segata, Nicola
Published in Current biology (22.05.2023)
Published in Current biology (22.05.2023)
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Hallstatt miners consumed blue cheese and beer during the Iron Age and retained a non-Westernized gut microbiome until the Baroque period
Maixner, Frank, Sarhan, Mohamed S., Huang, Kun D., Tett, Adrian, Schoenafinger, Alexander, Zingale, Stefania, Blanco-Míguez, Aitor, Manghi, Paolo, Cemper-Kiesslich, Jan, Rosendahl, Wilfried, Kusebauch, Ulrike, Morrone, Seamus R., Hoopmann, Michael R., Rota-Stabelli, Omar, Rattei, Thomas, Moritz, Robert L., Oeggl, Klaus, Segata, Nicola, Zink, Albert, Reschreiter, Hans, Kowarik, Kerstin
Published in Current biology (06.12.2021)
Published in Current biology (06.12.2021)
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Extension of the Segatella copri complex to 13 species with distinct large extrachromosomal elements and associations with host conditions
Blanco-Míguez, Aitor, Gálvez, Eric J.C., Pasolli, Edoardo, De Filippis, Francesca, Amend, Lena, Huang, Kun D., Manghi, Paolo, Lesker, Till-Robin, Riedel, Thomas, Cova, Linda, Punčochář, Michal, Thomas, Andrew Maltez, Valles-Colomer, Mireia, Schober, Isabel, Hitch, Thomas C.A., Clavel, Thomas, Berry, Sarah E., Davies, Richard, Wolf, Jonathan, Spector, Tim D., Overmann, Jörg, Tett, Adrian, Ercolini, Danilo, Segata, Nicola, Strowig, Till
Published in Cell host & microbe (08.11.2023)
Published in Cell host & microbe (08.11.2023)
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Journal Article
Establishment of a non-Westernized gut microbiota in men who have sex with men is associated with sexual practices
Huang, Kun D., Amend, Lena, Gálvez, Eric J.C., Lesker, Till-Robin, de Oliveira, Romulo, Bielecka, Agata, Blanco-Míguez, Aitor, Valles-Colomer, Mireia, Ruf, Isabel, Pasolli, Edoardo, Buer, Jan, Segata, Nicola, Esser, Stefan, Strowig, Till, Kehrmann, Jan
Published in Cell reports. Medicine (19.03.2024)
Published in Cell reports. Medicine (19.03.2024)
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Journal Article
Reconstruction of ancient microbial genomes from the human gut
Wibowo, Marsha C, Yang, Zhen, Borry, Maxime, Hübner, Alexander, Huang, Kun D, Tierney, Braden T, Zimmerman, Samuel, Barajas-Olmos, Francisco, Contreras-Cubas, Cecilia, García-Ortiz, Humberto, Martínez-Hernández, Angélica, Luber, Jacob M, Kirstahler, Philipp, Blohm, Tre, Smiley, Francis E, Arnold, Richard, Ballal, Sonia A, Pamp, Sünje Johanna, Russ, Julia, Maixner, Frank, Rota-Stabelli, Omar, Segata, Nicola, Reinhard, Karl, Orozco, Lorena, Warinner, Christina, Snow, Meradeth, LeBlanc, Steven, Kostic, Aleksandar D
Published in Nature (London) (10.06.2021)
Published in Nature (London) (10.06.2021)
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Application of Ultrasonography in the Diagnosis and Management of Papillary Thyroid Microcarcinoma
Kun, Huang, MD, Ji-Bin, Liu, MD
Published in Advanced ultrasound in diagnosis and therapy (30.12.2020)
Published in Advanced ultrasound in diagnosis and therapy (30.12.2020)
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Journal Article
The Prevotella copri complex comprises four distinct clades that are underrepresented in Westernised populations
Tett, Adrian, Huang, Kun D, Asnicar, Francesco, Fehlner-Peach, Hannah, Pasolli, Edoardo, Karcher, Nicolai, Armanini, Federica, Manghi, Paolo, Bonham, Kevin, Moreno Zolfo, De Filippis, Francesca, Magnabosco, Cara, Bonneau, Richard, Lusingu, John, Amuasi, John, Reinhard, Karl, Rattei, Thomas, Boulund, Fredrik, Engstrand, Lars, Zink, Albert, Collado, Maria Carmen, Littman, Dan R, Eibach, Daniel, Ercolini, Danilo, Rota-Stabelli, Omar, Huttenhower, Curtis, Maixner, Frank, Segata, Nicola
Published in bioRxiv (09.04.2019)
Published in bioRxiv (09.04.2019)
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Paper
Extending and improving metagenomic taxonomic profiling with uncharacterized species with MetaPhlAn 4
Blanco-Miguez, Aitor, Beghini, Francesco, Cumbo, Fabio, Mciver, Lauren J, Thompson, Kelsey N, Moreno Zolfo, Manghi, Paolo, Dubois, Leonard, Huang, Kun D, Thomas, Andrew Maltez, Piccinno, Gianmarco, Piperni, Elisa, Punčochář, Michal, Valles-Colomer, Mireia, Tett, Adrian, Giordano, Francesca, Davies, Richard, Wolf, Jonathan, Berry, Sarah E, Spector, Tim D, Franzosa, Eric A, Pasolli, Edoardo, Asnicar, Francesco, Huttenhower, Curtis, Segata, Nicola
Published in bioRxiv (22.08.2022)
Published in bioRxiv (22.08.2022)
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Paper
Functional Outcome in Acute Stroke Patients with Oropharyngeal Dysphagia after Swallowing Therapy
Huang, Kun-Ling, MD, Liu, Ting-Yuan, MD, Huang, Yu-Chi, MD, Leong, Chau-Peng, MD, Lin, Wei-Che, MD, PhD, Pong, Ya-Ping, MD
Published in Journal of stroke and cerebrovascular diseases (01.11.2014)
Published in Journal of stroke and cerebrovascular diseases (01.11.2014)
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Inhibition of Na-K-Cl cotransporter isoform 1 reduces Ischemia-Reperfusion Induced Lung Injury
Lan, Chou-Chin, MD, PhD, Peng, Chung-Kan, MD, PhD, Tang, Shih-En, MD, PhD, Lin, Hsueh-Ju, Yang, Sung-Sen, MD, PhD, Wu, Chin-Pyng, MD, PhD, Huang, Kun-Lun, MD, PhD
Published in The Journal of thoracic and cardiovascular surgery (2016)
Published in The Journal of thoracic and cardiovascular surgery (2016)
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Cancer Incidence Trend in Chinese Longevity Town Cenxi City from 2016 to 2020
WU Fanying, LYU Wu, DU Kun, ZHOU Jingfan, HUANG Guolin, FENG Jie
Published in Zhongguo quanke yixue (01.11.2022)
Published in Zhongguo quanke yixue (01.11.2022)
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