Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species
Donati, Claudio, Hiller, N Luisa, Tettelin, Hervé, Muzzi, Alessandro, Croucher, Nicholas J, Angiuoli, Samuel V, Oggioni, Marco, Dunning Hotopp, Julie C, Hu, Fen Z, Riley, David R, Covacci, Antonello, Mitchell, Tim J, Bentley, Stephen D, Kilian, Morgens, Ehrlich, Garth D, Rappuoli, Rino, Moxon, E Richard, Masignani, Vega
Published in Genome biology (29.10.2010)
Published in Genome biology (29.10.2010)
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Generation of genic diversity among Streptococcus pneumoniae strains via horizontal gene transfer during a chronic polyclonal pediatric infection
Hiller, N Luisa, Ahmed, Azad, Powell, Evan, Martin, Darren P, Eutsey, Rory, Earl, Josh, Janto, Benjamin, Boissy, Robert J, Hogg, Justin, Barbadora, Karen, Sampath, Rangarajan, Lonergan, Shaun, Post, J Christopher, Hu, Fen Z, Ehrlich, Garth D
Published in PLoS pathogens (01.09.2010)
Published in PLoS pathogens (01.09.2010)
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Comparative Genomic Analyses of 17 Clinical Isolates of Gardnerella vaginalis Provide Evidence of Multiple Genetically Isolated Clades Consistent with Subspeciation into Genovars
Ahmed, Azad, Earl, Josh, Retchless, Adam, Hillier, Sharon L, Rabe, Lorna K, Cherpes, Thomas L, Powell, Evan, Janto, Benjamin, Eutsey, Rory, Hiller, N. Luisa, Boissy, Robert, Dahlgren, Margaret E, Hall, Barry G, Costerton, J. William, Post, J. Christopher, Hu, Fen Z, Ehrlich, Garth D
Published in Journal of Bacteriology (01.08.2012)
Published in Journal of Bacteriology (01.08.2012)
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Characterization and modeling of the Haemophilus influenzae core and supragenomes based on the complete genomic sequences of Rd and 12 clinical nontypeable strains
Hogg, Justin S, Hu, Fen Z, Janto, Benjamin, Boissy, Robert, Hayes, Jay, Keefe, Randy, Post, J Christopher, Ehrlich, Garth D
Published in Genome biology (05.06.2007)
Published in Genome biology (05.06.2007)
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Comparative Genomic Analyses of Seventeen Streptococcus pneumoniae Strains: Insights into the Pneumococcal Supragenome
Hiller, N Luisa, Janto, Benjamin, Hogg, Justin S, Boissy, Robert, Yu, Susan, Powell, Evan, Keefe, Randy, Ehrlich, Nathan E, Shen, Kai, Hayes, Jay, Barbadora, Karen, Klimke, William, Dernovoy, Dmitry, Tatusova, Tatiana, Parkhill, Julian, Bentley, Stephen D, Post, J Christopher, Ehrlich, Garth D, Hu, Fen Z
Published in Journal of Bacteriology (01.11.2007)
Published in Journal of Bacteriology (01.11.2007)
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Deletion of genes involved in the ketogluconate metabolism, Entner-Doudoroff pathway, and glucose dehydrogenase increase local and invasive virulence phenotypes in Streptococcus pneumoniae
Hu, Fen Z, Król, Jarosław E, Tsai, Chen Hsuan Sherry, Eutsey, Rory A, Hiller, Luisa N, Sen, Bhaswati, Ahmed, Azad, Hillman, Todd, Buchinsky, Farrel J, Nistico, Laura, Dice, Bethany, Longwell, Mark, Horsey, Edward, Ehrlich, Garth D
Published in PloS one (08.01.2019)
Published in PloS one (08.01.2019)
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Identification and Characterization of msf, a Novel Virulence Factor in Haemophilus influenzae
Kress-Bennett, Jennifer M, Hiller, N Luisa, Eutsey, Rory A, Powell, Evan, Longwell, Mark J, Hillman, Todd, Blackwell, Tenisha, Byers, Barbara, Mell, Joshua C, Post, J Christopher, Hu, Fen Z, Ehrlich, Garth D, Janto, Benjamin A
Published in PloS one (15.03.2016)
Published in PloS one (15.03.2016)
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Insights into the genome of large sulfur bacteria revealed by analysis of single filaments
Mussmann, Marc, Hu, Fen Z, Richter, Michael, de Beer, Dirk, Preisler, André, Jørgensen, Bo B, Huntemann, Marcel, Glöckner, Frank Oliver, Amann, Rudolf, Koopman, Werner J H, Lasken, Roger S, Janto, Benjamin, Hogg, Justin, Stoodley, Paul, Boissy, Robert, Ehrlich, Garth D
Published in PLoS biology (01.09.2007)
Published in PLoS biology (01.09.2007)
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In vivo capsular switch in Streptococcus pneumoniae--analysis by whole genome sequencing
Hu, Fen Z, Eutsey, Rory, Ahmed, Azad, Frazao, Nelson, Powell, Evan, Hiller, N Luisa, Hillman, Todd, Buchinsky, Farrel J, Boissy, Robert, Janto, Benjamin, Kress-Bennett, Jennifer, Longwell, Mark, Ezzo, Suzanne, Post, J Christopher, Nesin, Mirjana, Tomasz, Alexander, Ehrlich, Garth D
Published in PloS one (08.11.2012)
Published in PloS one (08.11.2012)
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Comparative Genomic Analysis of Ten Streptococcus pneumoniae Temperate Bacteriophages
ROMERO, Patricia, CROUCHER, Nicholas J, LUISA HILLER, N, HU, Fen Z, EHRLICH, Garth D, BENTLEY, Stephen D, GARCIA, Ernesto, MITCHELL, Tim J
Published in Journal of Bacteriology (01.08.2009)
Published in Journal of Bacteriology (01.08.2009)
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Comparative supragenomic analyses among the pathogens Staphylococcus aureus, Streptococcus pneumoniae, and Haemophilus influenzae using a modification of the finite supragenome model
Boissy, Robert, Ahmed, Azad, Janto, Benjamin, Earl, Josh, Hall, Barry G, Hogg, Justin S, Pusch, Gordon D, Hiller, Luisa N, Powell, Evan, Hayes, Jay, Yu, Susan, Kathju, Sandeep, Stoodley, Paul, Post, J Christopher, Ehrlich, Garth D, Hu, Fen Z
Published in BMC genomics (13.04.2011)
Published in BMC genomics (13.04.2011)
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Comparative analysis and supragenome modeling of twelve Moraxella catarrhalis clinical isolates
Davie, Jeremiah J, Earl, Josh, de Vries, Stefan P W, Ahmed, Azad, Hu, Fen Z, Bootsma, Hester J, Stol, Kim, Hermans, Peter W M, Wadowsky, Robert M, Ehrlich, Garth D, Hays, John P, Campagnari, Anthony A
Published in BMC genomics (26.01.2011)
Published in BMC genomics (26.01.2011)
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Complete Genome Sequence of Streptococcus pneumoniae Strain ST556, a Multidrug-Resistant Isolate from an Otitis Media Patient
Li, Guiling, Hu, Fen Z, Yang, Xianwei, Cui, Yujun, Yang, Jun, Qu, Fen, Gao, George F, Zhang, Jing-Ren
Published in Journal of Bacteriology (01.06.2012)
Published in Journal of Bacteriology (01.06.2012)
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Characterization of Bacterial Communities in Venous Insufficiency Wounds by Use of Conventional Culture and Molecular Diagnostic Methods
TURTLE, Marie S, MOSTOW, Eliot, MUKHERJEE, Pranab, HU, Fen Z, MELTON-KREFT, Rachael, EHRLICH, Garth D, DOWD, Scot E, GHANNOUM, Mahmoud A
Published in Journal of Clinical Microbiology (01.11.2011)
Published in Journal of Clinical Microbiology (01.11.2011)
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Age of child, more than HPV type, is associated with clinical course in recurrent respiratory papillomatosis
Buchinsky, Farrel J, Donfack, Joseph, Derkay, Craig S, Choi, Sukgi S, Conley, Stephen F, Myer, 3rd, Charles M, McClay, John E, Campisi, Paolo, Wiatrak, Brian J, Sobol, Steven E, Schweinfurth, John M, Tsuji, Domingos H, Hu, Fen Z, Rockette, Howard E, Ehrlich, Garth D, Post, J Christopher
Published in PloS one (28.05.2008)
Published in PloS one (28.05.2008)
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Nanoscale Structural and Mechanical Properties of Nontypeable Haemophilus influenzae Biofilms
TERAN ARCE, Fernando, CARLSON, Ross, MONDS, James, VEEH, Richard, HU, Fen Z, STEWART, Philip S, LAL, Ratnesh, EHRLICH, Garth D, AVCI, Recep
Published in Journal of Bacteriology (01.04.2009)
Published in Journal of Bacteriology (01.04.2009)
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Development and validation of an Haemophilus influenzae supragenome hybridization (SGH) array for transcriptomic analyses
Janto, Benjamin A, Hiller, N Luisa, Eutsey, Rory A, Dahlgren, Margaret E, Earl, Joshua P, Powell, Evan, Ahmed, Azad, Hu, Fen Z, Ehrlich, Garth D
Published in PloS one (07.10.2014)
Published in PloS one (07.10.2014)
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Extensive Genomic Plasticity in Pseudomonas aeruginosa Revealed by Identification and Distribution Studies of Novel Genes among Clinical Isolates
Shen, Kai, Sayeed, Sameera, Antalis, Patricia, Gladitz, John, Ahmed, Azad, Dice, Bethany, Janto, Benjamin, Dopico, Richard, Keefe, Randy, Hayes, Jay, Johnson, Sandra, Yu, Sujun, Ehrlich, Nathan, Jocz, Jennifer, Kropp, Laura, Wong, Ray, Wadowsky, Robert M, Slifkin, Malcolm, Preston, Robert A, Erdos, Geza, Post, J. Christopher, Ehrlich, Garth D, Hu, Fen Z
Published in Infection and Immunity (01.09.2006)
Published in Infection and Immunity (01.09.2006)
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The microbiome of chronic rhinosinusitis: culture, molecular diagnostics and biofilm detection
Boase, Sam, Foreman, Andrew, Cleland, Edward, Tan, Lorwai, Melton-Kreft, Rachel, Pant, Harshita, Hu, Fen Z, Ehrlich, Garth D, Wormald, Peter-John
Published in BMC infectious diseases (08.05.2013)
Published in BMC infectious diseases (08.05.2013)
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Identification, Distribution, and Expression of Novel Genes in 10 Clinical Isolates of Nontypeable Haemophilus influenzae
Shen, Kai, Antalis, Patricia, Gladitz, John, Sayeed, Sameera, Ahmed, Azad, Yu, Shujun, Hayes, Jay, Johnson, Sandra, Dice, Bethany, Dopico, Richard, Keefe, Randy, Janto, Benjamin, Chong, William, Goodwin, Joseph, Wadowsky, Robert M, Erdos, Geza, Post, J. Christopher, Ehrlich, Garth D, Hu, Fen Z
Published in Infection and Immunity (01.06.2005)
Published in Infection and Immunity (01.06.2005)
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