Unlocking the efficiency of genomics laboratories with robotic liquid-handling
Tegally, Houriiyah, San, James Emmanuel, Giandhari, Jennifer, de Oliveira, Tulio
Published in BMC genomics (20.10.2020)
Published in BMC genomics (20.10.2020)
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Journal Article
Sixteen novel lineages of SARS-CoV-2 in South Africa
Tegally, Houriiyah, Wilkinson, Eduan, Lessells, Richard J., Giandhari, Jennifer, Pillay, Sureshnee, Msomi, Nokukhanya, Mlisana, Koleka, Bhiman, Jinal N., von Gottberg, Anne, Walaza, Sibongile, Fonseca, Vagner, Allam, Mushal, Ismail, Arshad, Glass, Allison J., Engelbrecht, Susan, Van Zyl, Gert, Preiser, Wolfgang, Williamson, Carolyn, Petruccione, Francesco, Sigal, Alex, Gazy, Inbal, Hardie, Diana, Hsiao, Nei-yuan, Martin, Darren, York, Denis, Goedhals, Dominique, San, Emmanuel James, Giovanetti, Marta, Lourenço, José, Alcantara, Luiz Carlos Junior, de Oliveira, Tulio
Published in Nature medicine (01.03.2021)
Published in Nature medicine (01.03.2021)
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Journal Article
Urgent need for a non-discriminatory and non-stigmatizing nomenclature for monkeypox virus
Happi, Christian, Adetifa, Ifedayo, Mbala, Placide, Njouom, Richard, Nakoune, Emmanuel, Happi, Anise, Ndodo, Nnaemeka, Ayansola, Oyeronke, Mboowa, Gerald, Bedford, Trevor, Neher, Richard A, Roemer, Cornelius, Hodcroft, Emma, Tegally, Houriiyah, O'Toole, Áine, Rambaut, Andrew, Pybus, Oliver, Kraemer, Moritz U G, Wilkinson, Eduan, Isidro, Joana, Borges, Vítor, Pinto, Miguel, Gomes, João Paulo, Freitas, Lucas, Resende, Paola C, Lee, Raphael T C, Maurer-Stroh, Sebastian, Baxter, Cheryl, Lessells, Richard, Ogwell, Ahmed E, Kebede, Yenew, Tessema, Sofonias K, de Oliveira, Tulio
Published in PLoS biology (23.08.2022)
Published in PLoS biology (23.08.2022)
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Journal Article
Omicron BA.4/BA.5 escape neutralizing immunity elicited by BA.1 infection
Khan, Khadija, Karim, Farina, Ganga, Yashica, Bernstein, Mallory, Jule, Zesuliwe, Reedoy, Kajal, Cele, Sandile, Lustig, Gila, Amoako, Daniel, Wolter, Nicole, Samsunder, Natasha, Sivro, Aida, San, James Emmanuel, Giandhari, Jennifer, Tegally, Houriiyah, Pillay, Sureshnee, Naidoo, Yeshnee, Mazibuko, Matilda, Miya, Yoliswa, Ngcobo, Nokuthula, Manickchund, Nithendra, Magula, Nombulelo, Karim, Quarraisha Abdool, von Gottberg, Anne, Abdool Karim, Salim S., Hanekom, Willem, Gosnell, Bernadett I., Lessells, Richard J., de Oliveira, Tulio, Moosa, Mahomed-Yunus S., Sigal, Alex
Published in Nature communications (10.08.2022)
Published in Nature communications (10.08.2022)
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Journal Article
SARS-CoV-2 prolonged infection during advanced HIV disease evolves extensive immune escape
Cele, Sandile, Karim, Farina, Lustig, Gila, San, James Emmanuel, Hermanus, Tandile, Tegally, Houriiyah, Snyman, Jumari, Moyo-Gwete, Thandeka, Wilkinson, Eduan, Bernstein, Mallory, Khan, Khadija, Hwa, Shi-Hsia, Tilles, Sasha W., Singh, Lavanya, Giandhari, Jennifer, Mthabela, Ntombifuthi, Mazibuko, Matilda, Ganga, Yashica, Gosnell, Bernadett I., Karim, Salim S. Abdool, Hanekom, Willem, Van Voorhis, Wesley C., Ndung’u, Thumbi, Lessells, Richard J., Moore, Penny L., Moosa, Mahomed-Yunus S., de Oliveira, Tulio, Sigal, Alex
Published in Cell host & microbe (09.02.2022)
Published in Cell host & microbe (09.02.2022)
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Journal Article
The emergence and ongoing convergent evolution of the SARS-CoV-2 N501Y lineages
Martin, Darren P., Weaver, Steven, Tegally, Houriiyah, San, James Emmanuel, Shank, Stephen D., Wilkinson, Eduan, Lucaci, Alexander G., Giandhari, Jennifer, Naidoo, Sureshnee, Pillay, Yeshnee, Singh, Lavanya, Lessells, Richard J., Gupta, Ravindra K., Wertheim, Joel O., Nekturenko, Anton, Murrell, Ben, Harkins, Gordon W., Lemey, Philippe, MacLean, Oscar A., Robertson, David L., de Oliveira, Tulio, Kosakovsky Pond, Sergei L.
Published in Cell (30.09.2021)
Published in Cell (30.09.2021)
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Journal Article
Cross-Reactive Neutralizing Antibody Responses Elicited by SARS-CoV-2 501Y.V2 (B.1.351)
Moyo-Gwete, Thandeka, Madzivhandila, Mashudu, Makhado, Zanele, Ayres, Frances, Mhlanga, Donald, Oosthuysen, Brent, Lambson, Bronwen E, Kgagudi, Prudence, Tegally, Houriiyah, Iranzadeh, Arash, Doolabh, Deelan, Tyers, Lynn, Chinhoyi, Lionel R, Mennen, Mathilda, Skelem, Sango, Marais, Gert, Wibmer, Constantinos K, Bhiman, Jinal N, Ueckermann, Veronica, Rossouw, Theresa, Boswell, Michael, de Oliveira, Tulio, Williamson, Carolyn, Burgers, Wendy A, Ntusi, Ntobeko, Morris, Lynn, Moore, Penny L
Published in New England Journal of Medicine (03.06.2021)
Published in New England Journal of Medicine (03.06.2021)
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Comparison of SARS-CoV-2 sequencing using the ONT GridION and the Illumina MiSeq
Tshiabuila, Derek, Giandhari, Jennifer, Pillay, Sureshnee, Ramphal, Upasana, Ramphal, Yajna, Maharaj, Arisha, Anyaneji, Ugochukwu Jacob, Naidoo, Yeshnee, Tegally, Houriiyah, San, Emmanuel James, Wilkinson, Eduan, Lessells, Richard J, de Oliveira, Tulio
Published in BMC genomics (22.04.2022)
Published in BMC genomics (22.04.2022)
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Journal Article
Implementation of an efficient SARS-CoV-2 specimen pooling strategy for high throughput diagnostic testing
Singh, Lavanya, Anyaneji, Ugochukwu J., Ndifon, Wilfred, Turok, Neil, Mattison, Stacey A., Lessells, Richard, Sinayskiy, Ilya, San, Emmanuel J., Tegally, Houriiyah, Barnett, Shaun, Lorimer, Trevor, Petruccione, Francesco, de Oliveira, Tulio
Published in Scientific reports (07.09.2021)
Published in Scientific reports (07.09.2021)
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Journal Article
Early transmission of SARS-CoV-2 in South Africa: An epidemiological and phylogenetic report
Giandhari, Jennifer, Pillay, Sureshnee, Wilkinson, Eduan, Tegally, Houriiyah, Sinayskiy, Ilya, Schuld, Maria, Lourenço, José, Chimukangara, Benjamin, Lessells, Richard, Moosa, Yunus, Gazy, Inbal, Fish, Maryam, Singh, Lavanya, Sedwell Khanyile, Khulekani, Fonseca, Vagner, Giovanetti, Marta, Carlos Junior Alcantara, Luiz, Petruccione, Francesco, de Oliveira, Tulio
Published in International journal of infectious diseases (01.02.2021)
Published in International journal of infectious diseases (01.02.2021)
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Journal Article
Evaluation of miniaturized Illumina DNA preparation protocols for SARS-CoV-2 whole genome sequencing
Pillay, Sureshnee, San, James Emmanuel, Tshiabuila, Derek, Naidoo, Yeshnee, Pillay, Yusasha, Maharaj, Akhil, Anyaneji, Ugochukwu J, Wilkinson, Eduan, Tegally, Houriiyah, Lessells, Richard J, Baxter, Cheryl, de Oliveira, Tulio, Giandhari, Jennifer
Published in PloS one (26.04.2023)
Published in PloS one (26.04.2023)
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Journal Article
Multiple Early Introductions of SARS-CoV-2 to Cape Town, South Africa
Engelbrecht, Susan, Delaney, Kayla, Kleinhans, Bronwyn, Wilkinson, Eduan, Tegally, Houriiyah, Stander, Tania, van Zyl, Gert, Preiser, Wolfgang, de Oliveira, Tulio
Published in Viruses (22.03.2021)
Published in Viruses (22.03.2021)
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Journal Article
SARS-CoV-2 spike protein diversity at an intra-host level, among SARS-CoV-2 infected individuals in South Africa, 2020 to 2022
Subramoney, Kathleen, Mtileni, Nkhensani, Davis, Ashlyn, Giandhari, Jennifer, Tegally, Houriiyah, Wilkinson, Eduan, Naidoo, Yeshnee, Ramphal, Yajna, Pillay, Sureshnee, Ramphal, Upasana, Simane, Andiswa, Reddy, Bhaveshan, Mashishi, Bonolo, Mbenenge, Nonhlanhla, de Oliveira, Tulio, Fielding, Burtram C, Treurnicht, Florette K
Published in PloS one (30.05.2023)
Published in PloS one (30.05.2023)
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Journal Article
Rapid Replacement of SARS-CoV-2 Variants by Delta and Subsequent Arrival of Omicron, Uganda, 2021
Bbosa, Nicholas, Ssemwanga, Deogratius, Namagembe, Hamidah, Kiiza, Ronald, Kiconco, Jocelyn, Kayiwa, John, Lutalo, Tom, Lutwama, Julius, Ssekagiri, Alfred, Ssewanyana, Isaac, Nabadda, Susan, Kyobe-Bbosa, Henry, Giandhari, Jennifer, Pillay, Sureshnee, Ramphal, Upasana, Ramphal, Yajna, Naidoo, Yeshnee, Tshiabuila, Derek, Tegally, Houriiyah, San, Emmanuel J, Wilkinson, Eduan, de Oliveira, Tulio, Kaleebu, Pontiano
Published in Emerging infectious diseases (01.05.2022)
Published in Emerging infectious diseases (01.05.2022)
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Journal Article
Whole Genome Sequencing of SARS-CoV-2: Adapting Illumina Protocols for Quick and Accurate Outbreak Investigation during a Pandemic
Pillay, Sureshnee, Giandhari, Jennifer, Tegally, Houriiyah, Wilkinson, Eduan, Chimukangara, Benjamin, Lessells, Richard, Moosa, Yunus, Mattison, Stacey, Gazy, Inbal, Fish, Maryam, Singh, Lavanya, Khanyile, Khulekani Sedwell, San, James Emmanuel, Fonseca, Vagner, Giovanetti, Marta, Alcantara, Jr, Luiz Carlos, de Oliveira, Tulio
Published in Genes (17.08.2020)
Published in Genes (17.08.2020)
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Journal Article
Managing and assembling population-scale data streams, tools and workflows to plan for future pandemics within the INFORM-Africa Consortium
Poongavanan, Jenicca, Xavier, Joicymara, Dunaiski, Marcel, Tegally, Houriiyah, Oladejo, Sunday O., Ayorinde, Olawole, Wilkinson, Eduan, De Oliveira, Tulio
Published in South African Journal of Science (01.05.2023)
Published in South African Journal of Science (01.05.2023)
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Journal Article
Author Correction: Omicron BA.4/BA.5 escape neutralizing immunity elicited by BA.1 infection
Khan, Khadija, Karim, Farina, Ganga, Yashica, Bernstein, Mallory, Jule, Zesuliwe, Reedoy, Kajal, Cele, Sandile, Lustig, Gila, Amoako, Daniel, Wolter, Nicole, Samsunder, Natasha, Sivro, Aida, San, James Emmanuel, Giandhari, Jennifer, Tegally, Houriiyah, Pillay, Sureshnee, Naidoo, Yeshnee, Mazibuko, Matilda, Miya, Yoliswa, Ngcobo, Nokuthula, Manickchund, Nithendra, Magula, Nombulelo, Karim, Quarraisha Abdool, von Gottberg, Anne, Abdool Karim, Salim S., Hanekom, Willem, Gosnell, Bernadett I., Lessells, Richard J., de Oliveira, Tulio, Moosa, Mahomed-Yunus S., Sigal, Alex
Published in Nature communications (13.10.2022)
Published in Nature communications (13.10.2022)
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Journal Article
Molecular Epidemiology of SARS-CoV-2 during Five COVID-19 Waves and the Significance of Low-Frequency Lineages
Subramoney, Kathleen, Mtileni, Nkhensani, Giandhari, Jennifer, Naidoo, Yeshnee, Ramphal, Yajna, Pillay, Sureshnee, Ramphal, Upasana, Maharaj, Akhil, Tshiabuila, Derek, Tegally, Houriiyah, Wilkinson, Eduan, de Oliveira, Tulio, Fielding, Burtram C, Treurnicht, Florette K
Published in Viruses (18.05.2023)
Published in Viruses (18.05.2023)
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Journal Article
Omicron extensively but incompletely escapes Pfizer BNT162b2 neutralization
Cele, Sandile, Jackson, Laurelle, Khoury, David S., Khan, Khadija, Moyo-Gwete, Thandeka, Tegally, Houriiyah, San, James Emmanuel, Cromer, Deborah, Scheepers, Cathrine, Amoako, Daniel, Karim, Farina, Bernstein, Mallory, Lustig, Gila, Archary, Derseree, Smith, Muneerah, Ganga, Yashica, Jule, Zesuliwe, Reedoy, Kajal, Hwa, Shi-Hsia, Giandhari, Jennifer, Blackburn, Jonathan M., Gosnell, Bernadett I., Karim, Salim S. Abdool, Hanekom, Willem, Network for Genomic Surveillance in, COMMIT-KZN Team, von Gottberg, Anne, Bhiman, Jinal, Lessells, Richard J., Moosa, Mahomed-Yunus S., Davenport, Miles P., de Oliveira, Tulio, Moore, Penny L., Sigal, Alex
Published in Nature (London) (23.12.2021)
Published in Nature (London) (23.12.2021)
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