A universal genomic coordinate translator for comparative genomics
Zamani, Neda, Sundström, Görel, Meadows, Jennifer R S, Höppner, Marc P, Dainat, Jacques, Lantz, Henrik, Haas, Brian J, Grabherr, Manfred G
Published in BMC bioinformatics (30.06.2014)
Published in BMC bioinformatics (30.06.2014)
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Journal Article
Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies)
Delhomme, Nicolas, Sundström, Görel, Zamani, Neda, Lantz, Henrik, Lin, Yao-Cheng, Hvidsten, Torgeir R, Höppner, Marc P, Jern, Patric, Van de Peer, Yves, Lundeberg, Joakim, Grabherr, Manfred G, Street, Nathaniel R
Published in PloS one (28.09.2015)
Published in PloS one (28.09.2015)
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Journal Article
Phenotypic and genomic dissection of colour pattern variation in a reef fish radiation
Coulmance, Floriane, Akkaynak, Derya, Le Poul, Yann, Höppner, Marc P., McMillan, W. Owen, Puebla, Oscar
Published in Molecular ecology (01.02.2024)
Published in Molecular ecology (01.02.2024)
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Journal Article
Modular and configurable optimal sequence alignment software: Cola
Zamani, Neda, Sundström, Görel, Höppner, Marc P, Grabherr, Manfred G
Published in Source code for biology and medicine (09.06.2014)
Published in Source code for biology and medicine (09.06.2014)
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Journal Article
Two different epigenetic information channels in wild three-spined sticklebacks are involved in salinity adaptation
Heckwolf, Melanie J, Meyer, Britta S, Häsler, Robert, Höppner, Marc P, Eizaguirre, Christophe, Reusch, Thorsten B H
Published in Science advances (01.03.2020)
Published in Science advances (01.03.2020)
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Journal Article
Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs
Curtis, Bruce A., Tanifuji, Goro, Burki, Fabien, Gruber, Ansgar, Irimia, Manuel, Maruyama, Shinichiro, Arias, Maria C., Ball, Steven G., Gile, Gillian H., Hirakawa, Yoshihisa, Hopkins, Julia F., Kuo, Alan, Rensing, Stefan A., Schmutz, Jeremy, Symeonidi, Aikaterini, Elias, Marek, Eveleigh, Robert J. M., Herman, Emily K., Klute, Mary J., Nakayama, Takuro, Oborník, Miroslav, Reyes-Prieto, Adrian, Armbrust, E. Virginia, Aves, Stephen J., Beiko, Robert G., Coutinho, Pedro, Dacks, Joel B., Durnford, Dion G., Fast, Naomi M., Green, Beverley R., Grisdale, Cameron J., Hempel, Franziska, Henrissat, Bernard, Höppner, Marc P., Ishida, Ken-Ichiro, Kim, Eunsoo, Kořený, Luděk, Kroth, Peter G., Liu, Yuan, Malik, Shehre-Banoo, Maier, Uwe G., McRose, Darcy, Mock, Thomas, Neilson, Jonathan A. D., Onodera, Naoko T., Poole, Anthony M., Pritham, Ellen J., Richards, Thomas A., Rocap, Gabrielle, Roy, Scott W., Sarai, Chihiro, Schaack, Sarah, Shirato, Shu, Slamovits, Claudio H., Spencer, David F., Suzuki, Shigekatsu, Worden, Alexandra Z., Zauner, Stefan, Barry, Kerrie, Bell, Callum, Bharti, Arvind K., Crow, John A., Grimwood, Jane, Kramer, Robin, Lindquist, Erika, Lucas, Susan, Salamov, Asaf, McFadden, Geoffrey I., Lane, Christopher E., Keeling, Patrick J., Gray, Michael W., Grigoriev, Igor V., Archibald, John M.
Published in Nature (London) (06.12.2012)
Published in Nature (London) (06.12.2012)
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Journal Article
Mutational and transcriptional landscape of pediatric B-cell precursor lymphoblastic lymphoma
Kroeze, Emma, Iaccarino, Ingram, Kleisman, Michelle M., Mondal, Mayukh, Beder, Thomas, Khouja, Mouhamad, Höppner, Marc P., Scheijde-Vermeulen, Marijn A., Kester, Lennart A., Brüggemann, Monika, Baldus, Claudia D., Cario, Gunnar, Bladergroen, Reno S., Garnier, Nathalie, Attarbaschi, Andishe, Verdu-Amorós, Jaime, Sutton, Rosemary, Macintyre, Elizabeth, Scholten, Kenneth, Arias Padilla, Laura, Burkhardt, Birgit, Beishuizen, Auke, den Boer, Monique L., Kuiper, Roland P., Loeffen, Jan L. C., Boer, Judith M., Klapper, Wolfram
Published in Blood (04.07.2024)
Published in Blood (04.07.2024)
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Journal Article
The evolution of microendemism in a reef fish (Hypoplectrus maya)
Moran, Benjamin M., Hench, Kosmas, Waples, Robin S., Höppner, Marc P., Baldwin, Carole C., McMillan, William Owen, Puebla, Oscar
Published in Molecular ecology (01.06.2019)
Published in Molecular ecology (01.06.2019)
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Journal Article
Inter-chromosomal coupling between vision and pigmentation genes during genomic divergence
Hench, Kosmas, Vargas, Marta, Höppner, Marc P., McMillan, W. Owen, Puebla, Oscar
Published in Nature ecology & evolution (01.04.2019)
Published in Nature ecology & evolution (01.04.2019)
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Journal Article
Artificially designed promoters: Understanding the role of spatial features and canonical binding sites in transcription
Baumann, Martina, Höppner, Marc P., Meier, Michael, Pontiller, Jens, Ernst, Wolfgang, Grabherr, Reingard, Mauceli, Evan, Grabherr, Manfred G.
Published in Bioengineered (01.03.2012)
Published in Bioengineered (01.03.2012)
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Journal Article
Structural genomic changes underlie alternative reproductive strategies in the ruff (Philomachus pugnax)
Lamichhaney, Sangeet, Fan, Guangyi, Widemo, Fredrik, Gunnarsson, Ulrika, Thalmann, Doreen Schwochow, Hoeppner, Marc P, Kerje, Susanne, Gustafson, Ulla, Shi, Chengcheng, Zhang, He, Chen, Wenbin, Liang, Xinming, Huang, Leihuan, Wang, Jiahao, Liang, Enjing, Wu, Qiong, Lee, Simon Ming-Yuen, Xu, Xun, Höglund, Jacob, Liu, Xin, Andersson, Leif
Published in Nature genetics (01.01.2016)
Published in Nature genetics (01.01.2016)
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Journal Article
Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies): e0139080
Delhomme, Nicolas, Sundstrom, Gorel, Zamani, Neda, Lantz, Henrik, Lin, Yao-Cheng, Hvidsten, Torgeir R, Hoppner, Marc P, Jern, Patric, Peer, Yves Vande, Lundeberg, Joakim
Published in PloS one (01.09.2015)
Published in PloS one (01.09.2015)
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Journal Article
Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs
Curtis, Bruce A., Tanifuji, Goro, Burki, Fabien, Gruber, Ansgar, Irimia, Manuuel, Maruyama, Shinichiro, Arias, Maria C., Ball, Steven G., Gile, Gillian H., Hirakawa, Yoshihisa, Hopkins, Julia F., Kuo, Alan, Rensing, Stefan A., Schmutz, Jeremy, Symeonidi, Aikaterini, Elias, Marek, Eveleigh, Robert J. M., Herman, Emily K., Klute, Mary J., Nakayama, Takuro, Obornik, Miroslav, Reyes-Prieto, Adrian, Armbrust, E. Virginia, Aves, Stephen J., Beiko, Robert G., Coutinho, Pedro, Dacks, Joel B., Durnford, Dion G., Fast, Naomi M., Green, Beverley R., Grisdale, Cameron J., Hempel, Franziska, Henrissat, Bernard, Hoppner, Marc P., Ishida, Ken-Ichiro, Kim, Eunsoo, Koreny, Ludek, Kroth, Peter G., Liu, Yuan, Malik, Shehre-Banoo, Maier, Uwe G., McRose, Darcy, Mock, Thomas, Neilson, Jonathan A. D., Onodera, Naoko T., Poole, Anthony M., Pritham, Ellen J., Richards, Thomas A., Rocap, Gabrielle, Roy, Scott W., Sarai, Chihiro, Schaack, Sarah, Shirato, Shu, Slamovits, Claudio H., Spencer, Davie F., Suzuki, Shigekatsu, Worden, Alexandra Z., Zauner, Stefan, Barry, Kerrie, Bell, Callum, Bharti, Arvind K., Crow, John A., Grimwood, Jane, Kramer, Robin, Lindquist, Erika, Lucas, Susan, Salamov, Asaf, McFadden, Geoffrey I., Lane, Christopher E., Keeling, Patrick J., Gray, Michael W., Grigoriev, Igor V., Archibald, John M.
Published in Nature (London) (10.08.2012)
Published in Nature (London) (10.08.2012)
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Journal Article
Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen
Lin, Yao-Cheng, Wang, Jing, Delhomme, Nicolas, Schiffthaler, Bastian, Sundström, Görel, Zuccolo, Andrea, Nystedt, Björn, Hvidsten, Torgeir R., de la Torre, Amanda, Cossu, Rosa M., Hoeppner, Marc P., Lantz, Henrik, Scofield, Douglas G., Zamani, Neda, Johansson, Anna, Mannapperuma, Chanaka, Robinson, Kathryn M., Mähler, Niklas, Leitch, Ilia J., Pellicer, Jaume, Park, Eung-Jun, Van Montagu, Marc, Van de Peer, Yves, Grabherr, Manfred, Jansson, Stefan, Ingvarsson, Pär K., Street, Nathaniel R.
Published in Proceedings of the National Academy of Sciences - PNAS (13.11.2018)
Published in Proceedings of the National Academy of Sciences - PNAS (13.11.2018)
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Journal Article
An improved canine genome and a comprehensive catalogue of coding genes and non-coding transcripts
Hoeppner, Marc P, Lundquist, Andrew, Pirun, Mono, Meadows, Jennifer R S, Zamani, Neda, Johnson, Jeremy, Sundström, Görel, Cook, April, FitzGerald, Michael G, Swofford, Ross, Mauceli, Evan, Moghadam, Behrooz Torabi, Greka, Anna, Alföldi, Jessica, Abouelleil, Amr, Aftuck, Lynne, Bessette, Daniel, Berlin, Aaron, Brown, Adam, Gearin, Gary, Lui, Annie, Macdonald, J Pendexter, Priest, Margaret, Shea, Terrance, Turner-Maier, Jason, Zimmer, Andrew, Lander, Eric S, di Palma, Federica, Lindblad-Toh, Kerstin, Grabherr, Manfred G
Published in PloS one (13.03.2014)
Published in PloS one (13.03.2014)
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Journal Article
Linked genetic variants on chromosome 10 control ear morphology and body mass among dog breeds
Webster, Matthew T, Kamgari, Nona, Perloski, Michele, Hoeppner, Marc P, Axelsson, Erik, Hedhammar, Åke, Pielberg, Gerli, Lindblad-Toh, Kerstin
Published in BMC genomics (23.06.2015)
Published in BMC genomics (23.06.2015)
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Journal Article
Chromosomal genome assembly of the ethanol production strain CBS 11270 indicates a highly dynamic genome structure in the yeast species Brettanomyces bruxellensis
Tiukova, Ievgeniia A, Pettersson, Mats E, Hoeppner, Marc P, Olsen, Remi-Andre, Käller, Max, Nielsen, Jens, Dainat, Jacques, Lantz, Henrik, Söderberg, Jonas, Passoth, Volkmar
Published in PloS one (01.05.2019)
Published in PloS one (01.05.2019)
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Journal Article
Comparative analysis of RNA families reveals distinct repertoires for each domain of life
Hoeppner, Marc P, Gardner, Paul P, Poole, Anthony M
Published in PLoS computational biology (01.11.2012)
Published in PLoS computational biology (01.11.2012)
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