HTRgene: a computational method to perform the integrated analysis of multiple heterogeneous time-series data: case analysis of cold and heat stress response signaling genes in Arabidopsis
Ahn, Hongryul, Jung, Inuk, Chae, Heejoon, Kang, Dongwon, Jung, Woosuk, Kim, Sun
Published in BMC bioinformatics (02.12.2019)
Published in BMC bioinformatics (02.12.2019)
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Journal Article
Ensemble Learning to Identify Depression Indicators for Korean Farmers
Park, Jinwoo, Ahn, Hongryul, Yoon, Kanwoo, Lee, Minji, Hong, Seunghyeok
Published in IEEE access (01.01.2023)
Published in IEEE access (01.01.2023)
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Journal Article
StressGenePred: a twin prediction model architecture for classifying the stress types of samples and discovering stress-related genes in arabidopsis
Kang, Dongwon, Ahn, Hongryul, Lee, Sangseon, Lee, Chai-Jin, Hur, Jihye, Jung, Woosuk, Kim, Sun
Published in BMC genomics (20.12.2019)
Published in BMC genomics (20.12.2019)
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Journal Article
Functional in vivo and in vitro effects of 20q11.21 genetic aberrations on hPSC differentiation
Jo, Hye-Yeong, Lee, Youngsun, Ahn, Hongryul, Han, Hyeong-Jun, Kwon, Ara, Kim, Bo-Young, Ha, Hye-Yeong, Kim, Sang Cheol, Kim, Jung-Hyun, Kim, Yong-Ou, Kim, Sun, Koo, Soo Kyung, Park, Mi-Hyun
Published in Scientific reports (29.10.2020)
Published in Scientific reports (29.10.2020)
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Journal Article
PropaNet: Time-Varying Condition-Specific Transcriptional Network Construction by Network Propagation
Ahn, Hongryul, Jo, Kyuri, Jeong, Dabin, Pak, Minwoo, Hur, Jihye, Jung, Woosuk, Kim, Sun
Published in Frontiers in plant science (14.06.2019)
Published in Frontiers in plant science (14.06.2019)
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Journal Article
Transcriptional Network Analysis Reveals Drought Resistance Mechanisms of AP2/ERF Transgenic Rice
Ahn, Hongryul, Jung, Inuk, Shin, Seon-Ju, Park, Jinwoo, Rhee, Sungmin, Kim, Ju-Kon, Jung, Woosuk, Kwon, Hawk-Bin, Kim, Sun
Published in Frontiers in plant science (15.06.2017)
Published in Frontiers in plant science (15.06.2017)
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Journal Article
mirTime: identifying condition-specific targets of microRNA in time-series transcript data using Gaussian process model and spherical vector clustering
Kang, Hyejin, Ahn, Hongryul, Jo, Kyuri, Oh, Minsik, Kim, Sun
Published in Bioinformatics (Oxford, England) (12.07.2021)
Published in Bioinformatics (Oxford, England) (12.07.2021)
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Journal Article
Integration of heterogeneous time series gene expression data by clustering on time dimension
Hongryul Ahn, Heejoon Chae, Woosuk Jung, Sun Kim
Published in 2017 IEEE International Conference on Big Data and Smart Computing (BigComp) (01.02.2017)
Published in 2017 IEEE International Conference on Big Data and Smart Computing (BigComp) (01.02.2017)
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Conference Proceeding
Identification of Conserved Gene-Regulatory Networks that Integrate Environmental Sensing and Growth in the Root Cambium
Hoang, Nam V., Choe, Goh, Zheng, Yi, Aliaga Fandino, Ana Cecilia, Sung, Inyoung, Hur, Jaeryung, Kamran, Muhammad, Park, Chulmin, Kim, Hyoujin, Ahn, Hongryul, Kim, Sun, Fei, Zhangjun, Lee, Ji-Young
Published in Current biology (03.08.2020)
Published in Current biology (03.08.2020)
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Journal Article
Integrated analysis of omics data using microRNA-target mRNA network and PPI network reveals regulation of Gnai1 function in the spinal cord of Ews/Ewsr1 KO mice
Lee, Chai-Jin, Ahn, Hongryul, Lee, Sean Bong, Shin, Jong-Yeon, Park, Woong-Yang, Kim, Jong-Il, Lee, Junghee, Ryu, Hoon, Kim, Sun
Published in BMC medical genomics (12.08.2016)
Published in BMC medical genomics (12.08.2016)
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Journal Article
Novel drought-responsive regulatory coding and non-coding transcripts from Oryza Sativa L
Shin, Seon-Ju, Ahn, Hongryul, Jung, Inuk, Rhee, Sungmin, Kim, Sun, Kwon, Hawk-Bin
Published in Genes & genomics (01.10.2016)
Published in Genes & genomics (01.10.2016)
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Journal Article
DeepFunNet: Deep Learning for Gene Functional Similarity Network Construction
Ahn, Hongryul, Son, Seunghyun, Kim, Sun
Published in 2019 IEEE International Conference on Big Data and Smart Computing (BigComp) (01.02.2019)
Published in 2019 IEEE International Conference on Big Data and Smart Computing (BigComp) (01.02.2019)
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Conference Proceeding
IDEA: Integrating Divisive and Ensemble-Agglomerate hierarchical clustering framework for arbitrary shape data
Ahn, Hongryul, Jung, Inuk, Chae, Heejoon, Oh, Minsik, Kim, Inyoung, Kim, Sun
Published in 2021 IEEE International Conference on Big Data (Big Data) (15.12.2021)
Published in 2021 IEEE International Conference on Big Data (Big Data) (15.12.2021)
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Conference Proceeding
HTRgene: Integrating Multiple Heterogeneous Time-series Data to Investigate Cold and Heat Stress Response Signaling Genes in Arabidopsis
Ahn, Hongryul, Jung, Inuk, Chae, Heejoon, Kang, Dongwon, Jung, Woosuk, Kim, Sun
Published in 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) (01.12.2018)
Published in 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) (01.12.2018)
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Conference Proceeding
Identifying stress-related genes and predicting stress types in Arabidopsis using logical correlation layer and CMCL loss through time-series data
Kang, Dongwon, Ahn, Hongryul, Lee, Sangseon, Lee, Chai-Jin, Hur, Jihye, Jung, Woosuk, Kim, Sun
Published in 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) (01.12.2018)
Published in 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) (01.12.2018)
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Conference Proceeding